[Genoviz-cmts] SF.net SVN: genoviz:[10515] trunk/genometryImpl/src/com/affymetrix/ genometryImpl/operator

[<lfr...@us...>]

Revision: 10515
          http://genoviz.svn.sourceforge.net/genoviz/?rev=10515&view=rev
Author:   lfrohman
Date:     2012-02-29 16:57:46 +0000 (Wed, 29 Feb 2012)
Log Message:
-----------
misspelled class

Modified Paths:
--------------
    trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/InverseLogTransform.java
    trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/LogTransform.java

Added Paths:
-----------
    trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/AbstractLogTransform.java

Removed Paths:
-------------
    trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/AbsractLogTransform.java

Deleted: trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/AbsractLogTransform.java
===================================================================
--- trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/AbsractLogTransform.java	2012-02-29 16:55:43 UTC (rev 10514)
+++ trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/AbsractLogTransform.java	2012-02-29 16:57:46 UTC (rev 10515)
@@ -1,74 +0,0 @@
-
-package com.affymetrix.genometryImpl.operator;
-
-import java.text.DecimalFormat;
-import java.util.HashMap;
-import java.util.Map;
-
-/**
- *
- * @author lfrohman
- */
-public abstract class AbsractLogTransform extends AbstractFloatTransformer implements Operator{
-
-	protected static final DecimalFormat DF = new DecimalFormat("#,##0.##");
-	double base;
-	final String paramPrompt;
-	final String name;
-	final boolean parameterized;
-	
-	public AbsractLogTransform(String nm) {
-		super();
-		paramPrompt = "Base";
-		name = nm;
-		parameterized = true;
-	}
-	public AbsractLogTransform(Double base) {
-		super();
-		this.base = base;
-		paramPrompt = null;
-		name = getBaseName();
-		parameterized = false;
-	}
-	
-	protected abstract String getBaseName();
-	
-	@Override
-	public Map<String, Class<?>> getParameters() {
-		if (paramPrompt == null) {
-			return null;
-		}
-		Map<String, Class<?>> parameters = new HashMap<String, Class<?>>();
-		parameters.put(paramPrompt, String.class);
-		return parameters;
-	}
-	
-	@Override
-	public boolean setParameters(Map<String, Object> parms) {
-		if (paramPrompt != null && parms.size() == 1 && parms.get(paramPrompt) instanceof String) {
-			setParameter((String)parms.get(paramPrompt));
-			return true;
-		}
-		return false;
-	}
-	
-	protected boolean setParameter(String s) {
-		if (parameterized) {
-			if ("e".equals(s.trim().toLowerCase())) {
-				base = Math.E;
-			}
-			else {
-				try {
-					base = Double.parseDouble(s);
-					if (base <= 0) {
-						return false;
-					}
-				}
-				catch (Exception x) {
-					return false;
-				}
-			}
-		}
-		return true;
-	}
-}

Added: trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/AbstractLogTransform.java
===================================================================
--- trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/AbstractLogTransform.java	                        (rev 0)
+++ trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/AbstractLogTransform.java	2012-02-29 16:57:46 UTC (rev 10515)
@@ -0,0 +1,74 @@
+
+package com.affymetrix.genometryImpl.operator;
+
+import java.text.DecimalFormat;
+import java.util.HashMap;
+import java.util.Map;
+
+/**
+ *
+ * @author lfrohman
+ */
+public abstract class AbstractLogTransform extends AbstractFloatTransformer implements Operator{
+
+	protected static final DecimalFormat DF = new DecimalFormat("#,##0.##");
+	double base;
+	final String paramPrompt;
+	final String name;
+	final boolean parameterized;
+	
+	public AbstractLogTransform(String nm) {
+		super();
+		paramPrompt = "Base";
+		name = nm;
+		parameterized = true;
+	}
+	public AbstractLogTransform(Double base) {
+		super();
+		this.base = base;
+		paramPrompt = null;
+		name = getBaseName();
+		parameterized = false;
+	}
+	
+	protected abstract String getBaseName();
+	
+	@Override
+	public Map<String, Class<?>> getParameters() {
+		if (paramPrompt == null) {
+			return null;
+		}
+		Map<String, Class<?>> parameters = new HashMap<String, Class<?>>();
+		parameters.put(paramPrompt, String.class);
+		return parameters;
+	}
+	
+	@Override
+	public boolean setParameters(Map<String, Object> parms) {
+		if (paramPrompt != null && parms.size() == 1 && parms.get(paramPrompt) instanceof String) {
+			setParameter((String)parms.get(paramPrompt));
+			return true;
+		}
+		return false;
+	}
+	
+	protected boolean setParameter(String s) {
+		if (parameterized) {
+			if ("e".equals(s.trim().toLowerCase())) {
+				base = Math.E;
+			}
+			else {
+				try {
+					base = Double.parseDouble(s);
+					if (base <= 0) {
+						return false;
+					}
+				}
+				catch (Exception x) {
+					return false;
+				}
+			}
+		}
+		return true;
+	}
+}

Modified: trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/InverseLogTransform.java
===================================================================
--- trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/InverseLogTransform.java	2012-02-29 16:55:43 UTC (rev 10514)
+++ trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/InverseLogTransform.java	2012-02-29 16:57:46 UTC (rev 10515)
@@ -5,7 +5,7 @@
  *
  * @author auser
  */
-public class InverseLogTransform extends AbsractLogTransform implements Operator{
+public class InverseLogTransform extends AbstractLogTransform implements Operator{
 	
 	public InverseLogTransform(){
 		super("Inverse Log");

Modified: trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/LogTransform.java
===================================================================
--- trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/LogTransform.java	2012-02-29 16:55:43 UTC (rev 10514)
+++ trunk/genometryImpl/src/com/affymetrix/genometryImpl/operator/LogTransform.java	2012-02-29 16:57:46 UTC (rev 10515)
@@ -1,7 +1,7 @@
 package com.affymetrix.genometryImpl.operator;
 
 
-public final class LogTransform extends AbsractLogTransform implements Operator{
+public final class LogTransform extends AbstractLogTransform implements Operator{
 	double LN_BASE;
 	float LOG_1;
 

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