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[Geneontology-annotation] [ geneontology-Annotation issues-3413254 ] IPR000402 GO mapping: ATPase
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From: SourceForge.net <no...@so...> - 2011-09-26 12:15:10
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Annotation issues item #3413254, was opened at 2011-09-23 11:16 Message generated for change (Comment added) made by syong You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=605890&aid=3413254&group_id=36855 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: InterPro mapping Group: InterPro Status: Open Resolution: None Priority: 5 Private: No Submitted By: RFoulger (rfoulger) Assigned to: Siew-Yit Yong (syong) Summary: IPR000402 GO mapping: ATPase Initial Comment: This stems from a GO query from Doug at ZFIN: https://sourceforge.net/tracker/?func=detail&aid=3413006&group_id=36855&atid=440764 It looks suspicious to have IPR000402 (a P-ATPase) mapped to 'ATP biosynthetic process ; GO:0006754' for the following reasons: 1. GO uses 'ATP hydrolase' as an exact synonym for ATPase activity ; GO:0016887 (EC:3.6.1.3). 2. The blurb in the InterPro entry says 'P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy'. 3. Chris Mungall's Function/Process inferences suggest 'ATP catabolic process ; GO:0006200' based on annotation to GO:0005391 "sodium:potassium-exchanging ATPase activity. We can go over it in person on the 4th, at the InterPro2GO session, if you like. Thanks Becky ---------------------------------------------------------------------- >Comment By: Siew-Yit Yong (syong) Date: 2011-09-26 13:15 Message: Okay, we will discuss this on the 4th. Thanks. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=605890&aid=3413254&group_id=36855 |