From: SourceForge.net <no...@so...> - 2010-01-27 10:41:32
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Annotation issues item #2940879, was opened at 2010-01-27 10:29 Message generated for change (Comment added) made by edimmer You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=605890&aid=2940879&group_id=36855 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Emily Dimmer (edimmer) Assigned to: Jennifer Deegan (jenclark) Summary: problem with taxon rule for GO:0052085 Initial Comment: GO:0052085 "negative regulation by symbiont of host T-cell mediated immune response" only_in NCBITaxon:131567 "cellular organisms" >From checking with Jane it appears that a symbiont can also be a virus, so this taxon rule should be removed Cheers, Emily ---------------------------------------------------------------------- >Comment By: Emily Dimmer (edimmer) Date: 2010-01-27 10:41 Message: GO:0019065 receptor mediated endocytosis of virus by host It seems also that this term could also be correctly annotated to both host and virus. ---------------------------------------------------------------------- Comment By: Emily Dimmer (edimmer) Date: 2010-01-27 10:35 Message: actually, this might be related to quite a few viral terms that have taxon rules requiring them only to be applied to cellular organisms. All of the following terms seem to be appropriate for viral protein annotation, yet have a taxon rule requiring them only to be annotated to cellular organisms. GO:0019064 viral envelope fusion with host membrane GO:0019068 virion assembly GO:0019083 viral transcription GO:0030683 evasion by virus of host immune response GO:0046732 active induction of host immune response by virus GO:0046776 suppression by virus of host MHC class I cell surface presentation GO:0046796 viral genome transport in host cell GO:0052085 negative regulation by symbiont of host T-cell mediated immune response ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=605890&aid=2940879&group_id=36855 |