[Geneontology-gowebsite] [ geneontology-GO website-1116232 ] quality control

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GO website item #1116232, was opened at 2005-02-04 14:55
Message generated for change (Comment added) made by gomidori
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Category: request feature
Group: None
>Status: Closed
>Resolution: Out of Date
Priority: 5
Private: No
Submitted By: Jennifer I Clark (jenclark)
Assigned to: Nobody/Anonymous (nobody)
Summary: quality control

Initial Comment:
This action item is in the Chicago minutes:

Incyte:
Renee described a quality control method that involves
assembling a list of terms that are frequently used
together ("GO pairs"; e.g., 'protein kinase activity'
and 'protein amino acid phosphorylation'), and checking
whether all gene products annotated to one are also
annotated to the other. Judy asked whether  this or any
other quality control method could be shared with the
public efforts. Mike asked whether Incyte's Pfam-to-GO
mappings are different from the public ones; Renee
answered that they may be, since Incyte started with
Interpro and have done hand curation of the mappings.

	Action item: Renee will look into whether Incyte's
quality control methods or Pfam-to-GO mappings may be
shared with the public GO efforts. If permission is
obtained, Jen will put them on the GO website.


*Renee did send this to the list but she was waiting
for a reply from someone else and when i asked her she
said nobody had got back to her. I'm not sure if this
had been resolved. If anybody else wants to look into
it then please do.

Jen


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>Comment By: Midori Harris (gomidori)
Date: 2006-11-17 12:46

Message:
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I think this has gone stale -- Incyte has got out of the GO business in a
sense, and annotation quality control is being considered by reference
genome annotators.

m

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