GeneMiner2 is a comprehensive toolkit designed for phylogenomic genomics. Its main functionalities include:
- Mining single-copy nuclear genes, plastid genes/genomes, and other molecular markers from next-generation sequencing data.
- Aligning and trimming multiple molecular markers, constructing concatenated and coalescent-based phylogenetic trees, and calibrating tree time.

Reference for GeneMiner2:

Yu XY, Tang ZZ, Zhang Z, Song YX, He H, Shi Y, Hou JQ, Yu Y. 2026. GeneMiner2: Accurate and automated recovery of genes from genome-skimming data. Molecular Ecology Resources 26: e70111.https://doi.org/10.1111/1755-0998.70111

Features

  • target gene assembly
  • phylogenetic reconstruction
  • fine-grained read selection
  • adaptive k-mer selection

Project Activity

See All Activity >

Follow GeneMiner

GeneMiner Web Site

Other Useful Business Software
Go from Code to Production URL in Seconds Icon
Go from Code to Production URL in Seconds

Cloud Run deploys apps in any language instantly. Scales to zero. Pay only when code runs.

Skip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.
Start Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of GeneMiner!

Additional Project Details

Registered

2023-12-29
Report inappropriate content