Download
This package includes a few programs for rapid functional annotation for metagenomic sequences, including,
1) Gene prediction by FragGeneScan;
2) Similarity search by RAPSearch2;
3) Functional annotation in GO (Gene Ontology) and EC (Enzyme Commission) based on similarity search results;
4) From EC to metabolic pathway reconstruction by MinPath.
Inputs: Just sequencing reads (or assemblies)
Outputs: Protein-coding genes (or gene fragments); similarity search; functional annotations (in GO and EC); metabolic pathways.
Categories
AlgorithmsLicense
GNU General Public License version 3.0 (GPLv3)Follow Fun4Me
Other Useful Business Software
Our Free Plans just got better! | Auth0
You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
Rate This Project
Login To Rate This Project
User Reviews
-
I downloaded the software and ran it with python3. I received a series of syntax errors. I spent 20 minutes troubleshooting but nothing. The provided script doesn't work as it is, I recommend checking it better and uploading a working version. It's a pity since the idea is interesting and I was hoping to use one of the packages.