Will create a new release. thanks!
Thanks for merging in these changes. Do you think you will create a new release with the fix incorporated? (I need that to update the Bioconda installs.) Let me know if I can help with that.
Fixed clang compile and bad_alloc error; works on MacOSX
Fixed clang compile and bad_alloc error; works on MacOSX
Thank you, Wazim. I have access to a Linux hpc and will try it on that. Best, Alex Root On Tuesday, March 1, 2022, wazimismail wazimismail@users.sourceforge.net wrote: Hi Alex, I believe the program wasn't tested on MacOS. If you have access to a Linux system, it would be best to try running FragGeneScan on it. If not, could you try a different shell - bash or csh? The program wasn't tested on zsh either. I hope this helps. Best, Wazim M. segmentation fault on macos https://sourceforge.net/p/fraggenescan/discussion/general/thread/b870fc9005/?limit=25#6bfb...
Hi Alex, I believe the program wasn't tested on MacOS. If you have access to a Linux system, it would be best to try running FragGeneScan on it. If not, could you try a different shell - bash or csh? The program wasn't tested on zsh either. I hope this helps. Best, Wazim M.
Hello, I am getting a segmentation fault with my data and also the example data $FragGeneScan -s ./example/NC_000913-454.fna -o ./example/NC_000913-454-fgs -w 0 -t 454_10 no. of seqs: 23373 zsh: segmentation fault FragGeneScan -s ./example/NC_000913-454.fna -o ./example/NC_000913-454-fgs -w What would you recommend that I do? thank you
Hello, I read in the paper that it would be possible to train the model on your own data but I can't seem to find any documentation for this feature. I would like to train this model on nanopore data with various levels of error-correction. I'm using the Sanger 2% model right now but I would like to use a model with better accomadation of indels. Thank you for your time, Charles Cole
Hi wazimismail I'm getting this error (segmentation fault) while running FragGeneScan on my Mac os, can you please advise me on this? MY-MacBook-Pro:example s4251484$ /Users/s4251484/Library/FragGeneScan/FragGeneScan -s NC_000913.fna -o NC_000913-fgs -w 1 -t complete -p 1 Using 1 threads. no. of seqs: 1 Segmentation fault: 11
I believe all three of these compiler warnings can be ignored. Please let me know...
I am also having trouble installing this software. I am hoping to use it in combination...
Hi, Thank you for your interest in our software. To install the software, please...
Dear ,I am a student from Northwestern Polytechnical University of China。Now I have...
Dear ,I am a student from Northwestern Polytechnical University of China。Now I have...
Thread support added. Fixed memory leaks
Initial commit