FindPlasmids

Find plasmids in microbial genome assembly files

Brought to you by: barryghall

Downloads: 0 This Week

Last Update: 2024-03-08

Get an email when there's a new version of FindPlasmids

FindPlasmids identifies known plasmids in genome assembly files by using the assembly file to query a local Blast+ database of plasmid sequences.

The FindPlasmids package includes executables for Mac OS X, Linux and Windows.

Detailed instructions for making the local plasmid database, searching it, and identifying the plasmids are included in the FindPlasmids package.

Project Activity

See All Activity >

Follow FindPlasmids

FindPlasmids Web Site

Other Useful Business Software

Full-stack observability with actually useful AI | Grafana Cloud Icon

Full-stack observability with actually useful AI | Grafana Cloud

Our generous forever free tier includes the full platform, including the AI Assistant, for 3 users with 10k metrics, 50GB logs, and 50GB traces.

Built on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.

Create free account

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of FindPlasmids!

Additional Project Details

Registered

2018-03-19

Report inappropriate content

Full-stack observability with actually useful AI | Grafana Cloud

Our generous forever free tier includes the full platform, including the AI Assistant, for 3 users with 10k metrics, 50GB logs, and 50GB traces.

Built on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.

Create free account

Recommended Projects

AMOS
AMOS is a collection of tools for genome assembly
ARES
Antibiotic Resistance Evolution Simulator
Painless Pic Assembler
Collection of macros and libraries in assembly
SeqHunter2
a stand-alone bioinformatics software for querying genome sequences
GenoCAD
GenoCAD is a CAD software for synthetic biology. This application provides a web-based tool to design plasmids, artificial gene networks, and other synthetic genetic systems composed of standard genetic parts. It includes a parts management system, a rule-based design tool, and a simulation engine. This project has morphed into a SaaS model. The open source code is no longer maintained.