Tandem Repeat Occurrence Locator / News: Recent posts

Changed troll's output. Now, instead of motif number on the second column, troll produces the motif name. Other code modifications improved performance!

This is the same binary file in release 0.1.1. The package has been slightly reformulated. A perl script was added that translates the motif line numbers in the output file to motif names.

Just catching up with the main package, linux-ia32.

Happy downloading!
Adalberto

Release Notes:
In this release I change the way troll outputs shifted occurrences. For example:
gactactactactacg
will output 4 occurrences of the motif act (instead of 4 of act, 4 of cta and 4 of tac as it was in release 0.1.).

The reason for the _old_ form of output was that I judged that a user could possibly be searching a very specific motif (and not willing to accept shifts of it). I was later convinced that this does not make much sense...... read more

This package contains the troll binary for solaris/ultrasparc, a troll man page, and a motif ascii file with all motifs with size between 1 to 5 nucleotides.

bioinformatics.org: the open lab is now hosting a simplified mirror of the troll project.

The mirror will have the packages that are released at SF, as well as a link to the official troll homepage.

We thank bioinformatics.org: the open lab for this opportunity to make the troll more visible!

This package contains the troll binary for linux/ia32, a troll man page, and a motif ascii file with all motifs with size between 1 to 5 nucleotides.

I removed the package troll-dev from the server. It didn't make much sense to have it, since a snap shot of the code can be easily retrieved through the CVS server. A new package with binaries for linux/ia32 is replacing the earlier troll-dev package.

The CAPSL Arabidopsis SSR database is up! It has all SSRs of length 20bp or more, and with motifs of length 1 to 5. All the data on the database was obtained with troll 0.1!

The URL is: http://capb.capsl.udel.edu/arabidopsis.

Enjoy!

troll's website is up! finder.sourceforge.net was uploaded to sourceforge's servers this afternoon.

troll 0.1 released! The file package includes the development makefile (with all necessary debugging options). There is no documentation available yet, this is the highest priority in the project at this point.