EXCAVATOR2tool

ATTENTION!!!!!ATTENTION!!!!!ATTENTION!!!!!ATTENTION!!!!!
We recently published on BMC Genomics a novel software package, named XCAVATOR, for the identification of CNVs/CNAs from short and long reads whole-genome sequencing experiments (https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-4137-0).
XCAVATOR is freely available at http://sourceforge.net/projects/xcavator/.

EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data to identify CNVs. EXCAVATOR2 enhances the identification of all genomic CNVs, both overlapping and non-overlapping targeted exons by integrating the analysis of In-targets and Off- targets reads.
EXCAVATOR2 can be effectively employed for the identification of CNVs in small as well as large-scale re-sequencing population and cancer studies.

EXCAVATO2 paper:
http://nar.oxfordjournals.org/content/early/2016/08/09/nar.gkw695.full?keytype=ref&ijkey=O8r64Qj81gfMzLo

Project Samples

CNV calls assessment for a population data set

Copy number correlation with McCarroll calls

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Additional Project Details

Operating Systems

BSD, Linux

Registered

2016-03-16

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