[Evidencemodeler-users] Add PASA transcript assemblies to EVM

[de M. T. <tom...@em...>]

Hi,

I'm wondering how to include my PASA assemblies into EVM. I'm asking because I don't see a parameter in the partition_EVM_inputs.pl script or write_EVM_commands.pl but it can be included in the weights file. Or is the terminalExons parameter the one I'm looking for? not sure about that. For now I removed the PASA_transcript_assemblies line from the weights file and used the protein, transcript alignment files and the de novo gene prediction GFF only. My data comes from a MAKER run.

Thanks for your help,
Tom de Man

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