Re: [Esciencecentral-users] An error with building the source code
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Re: [Esciencecentral-users] An error with building the source code
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From: Simon W. <sim...@nc...> - 2015-09-25 08:11:02
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Hi,
that looks like the $JBOSS_HOME/standalone/configuration/standalone.xml has an error in it. Can you check that it's valid xml?
Cheers,
S.
> On 24 Sep 2015, at 17:38, Stanislav Polyakov <s.p...@gm...> wrote:
>
> Thank you for your help!
>
> I moved to comments all mentions of MongoDatasets in both code/pom.xml and code/server/Ear/pom.xml and now Maven builds the code successfully.
> I have another (probably unrelated) problem now: when I try to start
> ~/jboss/bin/standalone.sh I get an error:
>
> =========================================================================
>
> JBoss Bootstrap Environment
>
> JBOSS_HOME: /home/stas/jboss
>
> JAVA: java
>
> JAVA_OPTS: -server -XX:+UseCompressedOops -XX:+TieredCompilation -Xms64m -Xmx1024m -XX:MaxPermSize=512m -Djava.net.preferIPv4Stack=true -Dorg.jboss.resolver.warning=true -Dsun.rmi.dgc.client.gcInterval=3600000 -Dsun.rmi.dgc.server.gcInterval=3600000 -Djboss.modules.system.pkgs=org.jboss.byteman -Djava.awt.headless=true -Djboss.server.default.config=standalone.xml -Xrunjdwp:transport=dt_socket,address=8787,server=y,suspend=n
>
> =========================================================================
>
> Listening for transport dt_socket at address: 8787
> 17:53:54,846 INFO [org.jboss.modules] JBoss Modules version 1.1.1.GA
> 17:53:55,141 INFO [org.jboss.msc] JBoss MSC version 1.0.2.GA
> 17:53:55,199 INFO [org.jboss.as] JBAS015899: JBoss AS 7.1.1.Final "Brontes" starting
> 17:53:55,518 ERROR [org.jboss.as.server] JBAS015956: Caught exception during boot: org.jboss.as.controller.persistence.ConfigurationPersistenceException: JBAS014676: Failed to parse configuration
> at org.jboss.as.controller.persistence.XmlConfigurationPersister.load(XmlConfigurationPersister.java:141) [jboss-as-controller-7.1.1.Final.jar:7.1.1.Final]
> at org.jboss.as.server.ServerService.boot(ServerService.java:266) [jboss-as-server-7.1.1.Final.jar:7.1.1.Final]
> at org.jboss.as.controller.AbstractControllerService$1.run(AbstractControllerService.java:155) [jboss-as-controller-7.1.1.Final.jar:7.1.1.Final]
> at java.lang.Thread.run(Thread.java:745) [rt.jar:1.7.0_80]
> Caused by: javax.xml.stream.XMLStreamException: ParseError at [row,col]:[3,1]
> Message: Unexpected element '{urn:jboss:domain:1.3}server'
> at org.jboss.staxmapper.XMLMapperImpl.processNested(XMLMapperImpl.java:108) [staxmapper-1.1.0.Final.jar:1.1.0.Final]
> at org.jboss.staxmapper.XMLMapperImpl.parseDocument(XMLMapperImpl.java:69) [staxmapper-1.1.0.Final.jar:1.1.0.Final]
> at org.jboss.as.controller.persistence.XmlConfigurationPersister.load(XmlConfigurationPersister.java:133) [jboss-as-controller-7.1.1.Final.jar:7.1.1.Final]
> ... 3 more
>
> 17:53:55,525 FATAL [org.jboss.as.server] JBAS015957: Server boot has failed in an unrecoverable manner; exiting. See previous messages for details.
> 17:53:55,535 INFO [org.jboss.as] JBAS015950: JBoss AS 7.1.1.Final "Brontes" stopped in 5ms
>
>
> boot.log:
>
> 17:53:54,846 INFO [org.jboss.modules] JBoss Modules version 1.1.1.GA
> 17:53:55,141 INFO [org.jboss.msc] JBoss MSC version 1.0.2.GA
> 17:53:55,199 INFO [org.jboss.as] JBAS015899: JBoss AS 7.1.1.Final "Brontes" starting
> 17:53:55,201 DEBUG [org.jboss.as.config] Configured system properties:
> [Standalone] =
> awt.toolkit = sun.awt.X11.XToolkit
> file.encoding = UTF-8
> file.encoding.pkg = sun.io
> file.separator = /
> java.awt.graphicsenv = sun.awt.X11GraphicsEnvironment
> java.awt.headless = true
> java.awt.printerjob = sun.print.PSPrinterJob
> java.class.path = /home/stas/jboss/jboss-modules.jar
> java.class.version = 51.0
> java.endorsed.dirs = /usr/lib/jvm/java-7-oracle/jre/lib/endorsed
> java.ext.dirs = /usr/lib/jvm/java-7-oracle/jre/lib/ext:/usr/java/packages/lib/ext
> java.home = /usr/lib/jvm/java-7-oracle/jre
> java.io.tmpdir = /tmp
> java.library.path = /usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib
> java.net.preferIPv4Stack = true
> java.runtime.name = Java(TM) SE Runtime Environment
> java.runtime.version = 1.7.0_80-b15
> java.specification.name = Java Platform API Specification
> java.specification.vendor = Oracle Corporation
> java.specification.version = 1.7
> java.util.logging.manager = org.jboss.logmanager.LogManager
> java.vendor = Oracle Corporation
> java.vendor.url = http://java.oracle.com/
> java.vendor.url.bug = http://bugreport.sun.com/bugreport/
> java.version = 1.7.0_80
> java.vm.info = mixed mode
> java.vm.name = Java HotSpot(TM) 64-Bit Server VM
> java.vm.specification.name = Java Virtual Machine Specification
> java.vm.specification.vendor = Oracle Corporation
> java.vm.specification.version = 1.7
> java.vm.vendor = Oracle Corporation
> java.vm.version = 24.80-b11
> javax.management.builder.initial = org.jboss.as.jmx.PluggableMBeanServerBuilder
> javax.xml.datatype.DatatypeFactory = __redirected.__DatatypeFactory
> javax.xml.parsers.DocumentBuilderFactory = __redirected.__DocumentBuilderFactory
> javax.xml.parsers.SAXParserFactory = __redirected.__SAXParserFactory
> javax.xml.stream.XMLEventFactory = __redirected.__XMLEventFactory
> javax.xml.stream.XMLInputFactory = __redirected.__XMLInputFactory
> javax.xml.stream.XMLOutputFactory = __redirected.__XMLOutputFactory
> javax.xml.transform.TransformerFactory = __redirected.__TransformerFactory
> javax.xml.validation.SchemaFactory:http://www.w3.org/2001/XMLSchema = __redirected.__SchemaFactory
> javax.xml.xpath.XPathFactory:http://java.sun.com/jaxp/xpath/dom = __redirected.__XPathFactory
> jboss.home.dir = /home/stas/jboss
> jboss.host.name = stas-vostro-5470
> jboss.modules.dir = /home/stas/jboss/modules
> jboss.modules.system.pkgs = org.jboss.byteman
> jboss.node.name = stas-vostro-5470
> jboss.qualified.host.name = stas-vostro-5470
> jboss.server.base.dir = /home/stas/jboss/standalone
> jboss.server.config.dir = /home/stas/jboss/standalone/configuration
> jboss.server.data.dir = /home/stas/jboss/standalone/data
> jboss.server.default.config = standalone.xml
> jboss.server.deploy.dir = /home/stas/jboss/standalone/data/content
> jboss.server.log.dir = /home/stas/jboss/standalone/log
> jboss.server.name = stas-vostro-5470
> jboss.server.temp.dir = /home/stas/jboss/standalone/tmp
> line.separator =
>
> logging.configuration = file:/home/stas/jboss/standalone/configuration/logging.properties
> module.path = /home/stas/jboss/modules
> org.jboss.boot.log.file = /home/stas/jboss/standalone/log/boot.log
> org.jboss.resolver.warning = true
> org.xml.sax.driver = __redirected.__XMLReaderFactory
> os.arch = amd64
> os.name = Linux
> os.version = 3.5.0-61-generic
> path.separator = :
> sun.arch.data.model = 64
> sun.boot.class.path = /usr/lib/jvm/java-7-oracle/jre/lib/resources.jar:/usr/lib/jvm/java-7-oracle/jre/lib/rt.jar:/usr/lib/jvm/java-7-oracle/jre/lib/sunrsasign.jar:/usr/lib/jvm/java-7-oracle/jre/lib/jsse.jar:/usr/lib/jvm/java-7-oracle/jre/lib/jce.jar:/usr/lib/jvm/java-7-oracle/jre/lib/charsets.jar:/usr/lib/jvm/java-7-oracle/jre/lib/jfr.jar:/usr/lib/jvm/java-7-oracle/jre/classes
> sun.boot.library.path = /usr/lib/jvm/java-7-oracle/jre/lib/amd64
> sun.cpu.endian = little
> sun.cpu.isalist =
> sun.desktop = gnome
> sun.io.unicode.encoding = UnicodeLittle
> sun.java.command = /home/stas/jboss/jboss-modules.jar -mp /home/stas/jboss/modules -jaxpmodule javax.xml.jaxp-provider org.jboss.as.standalone -Djboss.home.dir=/home/stas/jboss
> sun.java.launcher = SUN_STANDARD
> sun.jnu.encoding = UTF-8
> sun.management.compiler = HotSpot 64-Bit Tiered Compilers
> sun.os.patch.level = unknown
> sun.rmi.dgc.client.gcInterval = 3600000
> sun.rmi.dgc.server.gcInterval = 3600000
> user.country = US
> user.dir = /home/stas/jboss/bin
> user.home = /home/stas
> user.language = en
> user.name = stas
> user.timezone = Europe/Moscow
> 17:53:55,210 DEBUG [org.jboss.as.config] VM Arguments: -D[Standalone] -XX:+UseCompressedOops -XX:+TieredCompilation -Xms64m -Xmx1024m -XX:MaxPermSize=512m -Djava.net.preferIPv4Stack=true -Dorg.jboss.resolver.warning=true -Dsun.rmi.dgc.client.gcInterval=3600000 -Dsun.rmi.dgc.server.gcInterval=3600000 -Djboss.modules.system.pkgs=org.jboss.byteman -Djava.awt.headless=true -Djboss.server.default.config=standalone.xml -Xrunjdwp:transport=dt_socket,address=8787,server=y,suspend=n -Dorg.jboss.boot.log.file=/home/stas/jboss/standalone/log/boot.log -Dlogging.configuration=file:/home/stas/jboss/standalone/configuration/logging.properties
> 17:53:55,518 ERROR [org.jboss.as.server] JBAS015956: Caught exception during boot: org.jboss.as.controller.persistence.ConfigurationPersistenceException: JBAS014676: Failed to parse configuration
> at org.jboss.as.controller.persistence.XmlConfigurationPersister.load(XmlConfigurationPersister.java:141) [jboss-as-controller-7.1.1.Final.jar:7.1.1.Final]
> at org.jboss.as.server.ServerService.boot(ServerService.java:266) [jboss-as-server-7.1.1.Final.jar:7.1.1.Final]
> at org.jboss.as.controller.AbstractControllerService$1.run(AbstractControllerService.java:155) [jboss-as-controller-7.1.1.Final.jar:7.1.1.Final]
> at java.lang.Thread.run(Thread.java:745) [rt.jar:1.7.0_80]
> Caused by: javax.xml.stream.XMLStreamException: ParseError at [row,col]:[3,1]
> Message: Unexpected element '{urn:jboss:domain:1.3}server'
> at org.jboss.staxmapper.XMLMapperImpl.processNested(XMLMapperImpl.java:108) [staxmapper-1.1.0.Final.jar:1.1.0.Final]
> at org.jboss.staxmapper.XMLMapperImpl.parseDocument(XMLMapperImpl.java:69) [staxmapper-1.1.0.Final.jar:1.1.0.Final]
> at org.jboss.as.controller.persistence.XmlConfigurationPersister.load(XmlConfigurationPersister.java:133) [jboss-as-controller-7.1.1.Final.jar:7.1.1.Final]
> ... 3 more
>
> 17:53:55,525 FATAL [org.jboss.as.server] JBAS015957: Server boot has failed in an unrecoverable manner; exiting. See previous messages for details.
> 17:53:55,535 INFO [org.jboss.as] JBAS015950: JBoss AS 7.1.1.Final "Brontes" stopped in 5ms
>
> With best regards,
> Stanislav
>
>
> 2015-09-24 11:14 GMT+03:00 Simon Woodman <sim...@nc...>:
> Hi,
>
> I'm sending this directly as I'm not sure if the mailing list is broken or slow... :-(
>
> Cheers,
>
> S>
>
> > Begin forwarded message:
> >
> > From: Simon Woodman <sim...@nc...>
> > Subject: Re: [Esciencecentral-users] An error with building the source code
> > Date: 24 September 2015 09:09:27 BST
> > To: "esc...@li..." <esc...@li...>
> >
> > Hi Stanislav,
> >
> > If you update to HEAD I think that this issue is fixed. If it isn't, the best thing to do is to edit the code/server/Ear/pom.xml. You need to remove two references to MongoDatasets, one is a dependency and one an ejbModule.
> >
> > Cheers,
> >
> > S.
> >
> >> On 24 Sep 2015, at 07:31, Stanislav Polyakov <s.p...@gm...> wrote:
> >>
> >> Hello!
> >>
> >> Could you help me please?
> >> I cannot not install e-Science Central on my computer (I'm using Ubuntu) because of the error that occurs when I try to build the source code:
> >>
> >> ~/esc/esciencecentral-code/code$ mvn -e clean install
> >> [INFO] Error stacktraces are turned on.
> >> [INFO] Scanning for projects...
> >> [ERROR] The build could not read 1 project -> [Help 1]
> >> org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
> >> [ERROR] Child module /home/stas/esc/esciencecentral-code/code/server/MongoDatasets of /home/stas/esc/esciencecentral-code/code/pom.xml does not exist @
> >>
> >> at org.apache.maven.project.DefaultProjectBuilder.build(DefaultProjectBuilder.java:363)
> >> at org.apache.maven.DefaultMaven.collectProjects(DefaultMaven.java:636)
> >> at org.apache.maven.DefaultMaven.getProjectsForMavenReactor(DefaultMaven.java:585)
> >> at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:234)
> >> at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
> >> at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537)
> >> at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196)
> >> at org.apache.maven.cli.MavenCli.main(MavenCli.java:141)
> >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> >> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> >> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> >> at java.lang.reflect.Method.invoke(Method.java:622)
> >> at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:290)
> >> at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:230)
> >> at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:409)
> >> at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:352)
> >> [ERROR]
> >> [ERROR] The project com.connexience:meta-project:3.1-SNAPSHOT (/home/stas/esc/esciencecentral-code/code/pom.xml) has 1 error
> >> [ERROR] Child module /home/stas/esc/esciencecentral-code/code/server/MongoDatasets of /home/stas/esc/esciencecentral-code/code/pom.xml does not exist
> >> [ERROR]
> >> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
> >> [ERROR]
> >> [ERROR] For more information about the errors and possible solutions, please read the following articles:
> >> [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/ProjectBuildingException
> >>
> >>
> >>
> >> Best regards,
> >> Stanislav Polyakov
> >> ------------------------------------------------------------------------------
> >> Monitor Your Dynamic Infrastructure at Any Scale With Datadog!
> >> Get real-time metrics from all of your servers, apps and tools
> >> in one place.
> >> SourceForge users - Click here to start your Free Trial of Datadog now!
> >> http://pubads.g.doubleclick.net/gampad/clk?id=241902991&iu=/4140_______________________________________________
> >> Esciencecentral-users mailing list
> >> Esc...@li...
> >> https://lists.sourceforge.net/lists/listinfo/esciencecentral-users
> >
> >
> > --
> > Simon Woodman
> > Research Associate
> > Newcastle University
> > sim...@nc...
> > sim...@gm...
> >
>
>
> --
> Simon Woodman
> Research Associate
> Newcastle University
> sim...@nc...
> sim...@gm...
>
>
--
Simon Woodman
Research Associate
Newcastle University
sim...@nc...
sim...@gm...
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