Re: [Ergatis-users] Pipeline stuck at the tRNAscan step

[rox <ro...@la...>]

It does look like the process is still running, and it looks like it's active, it keeps launching processes trnascan-1.4 and eufindtRNA.   

Roxanne Tapia
Software Developer 3
B-6 Genome Sciences


On Oct 28, 2011, at 10:13 AM, Chris Hemmerich wrote:

> 
> In addition to the steps Anup mentioned, have you checked to see if the 
> actual tRNAscan process is still running? I remember that a fasta file 
> without linebreaks will cause one of the programs (unfortunately, I'm not 
> sure it was tRNAscan) in the pipeline to run forever.
> 
> Cheers,
>  Chris
> 
> 
> On Thu, 27 Oct 2011, Gary Xie wrote:
> 
>> Running bacterial genome on Ergatis pipeline locally, but it stuck at the 
>> tRNAscan step for 10 days. Following is error message, any insight?
>> Thanks,
>> Gary
>> 
> 
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