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I am not sure that this behavior is a bug.

I get the same message com.vladium.emma.EMMARuntimeException: [CLASS_STAMP_MISMATCH] when indeed I am processing ec (emma coverage) files which have been collected against a different build than the corresponding em (emma metadata) file.

What should be changed is that when this runs in an ant build, a BuildException should be thrown so that the build stops, perhaps conditionally to a new attribute failonerror="true".

I am capturing the messages printed by emma and I check whether a coverage report has been generated to fail conditionally. But I think this ought to be in the guts of the ant task.