#23 Emboss-explorer not recognizing uploaded sequence files

[Francisco Prat Baella]

Using emboss-explorer 2.2.0-8 in Debian jessie. Whem running an emboss program after uploading sequences files gives an ERROR:

Error application terminated

Error: Failed to open filename 'sequence1.fa'
Error: Unable to read sequence 'sequence2.fa'
Died: est2genome terminated: Bad value for '-estsequence' with -auto defined

When pasting the sequences everything works properly. It seems like emboss-explore can't recognize the path to file or the sequencesfiles are not uploaded.
Never found this problem in previous Debian versions

Any clue about what is the problem? Thanks in advance

Francisco

[harmn]

Just ran into the same problem on Ubuntu Wily, and it appears to be a problem in /usr/share/perl5/EMBOSS/GUI.pm.

It can be fixed by changing line 538 from:
} elsif (ref $value eq 'Fh') {
to:
} elsif (ref $value eq 'CGI::File::Temp') {

Apparently with the current CGI.pm the type for the uploaded file handle is "CGI::File::Temp" instead of Fh.

[Francisco Prat Baella]

Thanks a lot. Your solution worked changing line 538 in GUI.pm. Problem
fixed.

[Francisco Prat Baella]

Thanks a lot. Your solution worked changing line 538 in GUI.pm. Problem fixed.