[Echempp-devel] examples example1.xml, 1.2, 1.3 example2.xml, 1.2, 1.3 example3.xml, 1.2, 1.3 example4.xml, 1.2, 1.3 example6.xml, 1.2, 1.3 example7.xml, 1.2, 1.3 example8.xml, 1.2, 1.3 example9.xml, 1.2, 1.3

[beeblbrox <bee...@us...>]

Update of /cvsroot/echempp/examples
In directory sc8-pr-cvs17.sourceforge.net:/tmp/cvs-serv15599/examples

Modified Files:
	example1.xml example2.xml example3.xml example4.xml 
	example6.xml example7.xml example8.xml example9.xml 
Log Message:
New examples to conform with current ModSim.
example5.xml is missing since it does not work with the patched parser.hpp


Index: example1.xml
===================================================================
RCS file: /cvsroot/echempp/examples/example1.xml,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** example1.xml	19 Dec 2007 13:58:29 -0000	1.2
--- example1.xml	27 Dec 2007 19:23:11 -0000	1.3
***************
*** 2,9 ****
  <!DOCTYPE boost_serialization>
  <boost_serialization signature="serialization::archive" version="3">
! <ep class_id="0" class_name="Induced_Simulated_Dynamic_doubleSecondTimeVariable_doubleVoltElectricPotentialVariable_doubleAmpereElectricCurrentVariable" tracking_level="1" version="0" object_id="_0">
  	<_AtomicBase class_id="1" tracking_level="0" version="0">
  		<Experiment class_id="2" tracking_level="0" version="0">
! 			<title_>Insert Experiment title</title_>
  		</Experiment>
  	</_AtomicBase>
--- 2,9 ----
  <!DOCTYPE boost_serialization>
  <boost_serialization signature="serialization::archive" version="3">
! <ep class_id="0" class_name="experiment::cv::SimInduced" tracking_level="1" version="0" object_id="_0">
  	<_AtomicBase class_id="1" tracking_level="0" version="0">
  		<Experiment class_id="2" tracking_level="0" version="0">
! 			<title_>/home/dome/echempp/examples/example1.xml</title_>
  		</Experiment>
  	</_AtomicBase>
***************
*** 18,22 ****
  		</ptime_date>
  	</induction_end>
! 	<cond_data class_id="6" class_name="ConditionDataModSim" tracking_level="1" version="0" object_id="_1">
  		<ConditionData class_id="5" tracking_level="1" version="0" object_id="_2"></ConditionData>
  		<safety>3</safety>
--- 18,22 ----
  		</ptime_date>
  	</induction_end>
! 	<cond_data class_id="6" class_name="experiment::ConditionDataModSim" tracking_level="1" version="0" object_id="_1">
  		<ConditionData class_id="5" tracking_level="1" version="0" object_id="_2"></ConditionData>
  		<safety>3</safety>
***************
*** 24,28 ****
  		<currentControlled>0</currentControlled>
  		<potentialControlled>1</potentialControlled>
! 		<finiteDistance class_id="7" tracking_level="1" version="0" object_id="_3">
  			<ABQ class_id="8" tracking_level="0" version="0">
  				<namestring>length</namestring>
--- 24,28 ----
  		<currentControlled>0</currentControlled>
  		<potentialControlled>1</potentialControlled>
! 		<finiteDistance class_id="7" tracking_level="0" version="0">
  			<ABQ class_id="8" tracking_level="0" version="0">
  				<namestring>length</namestring>
***************
*** 31,35 ****
  			<_value>5.0000000000000002e-05</_value>
  		</finiteDistance>
! 		<num_electrodes>2</num_electrodes>
  		<dimension>1</dimension>
  		<technique0>CV</technique0>
--- 31,35 ----
  			<_value>5.0000000000000002e-05</_value>
  		</finiteDistance>
! 		<num_electrodes>1</num_electrodes>
  		<dimension>1</dimension>
  		<technique0>CV</technique0>
***************
*** 37,45 ****
  		<boundary0>0</boundary0>
  		<boundary1>1</boundary1>
! 		<etExcitation0 class_id="9" tracking_level="1" version="0" object_id="_4">
  			<ExcitationFunction class_id="10" tracking_level="0" version="0"></ExcitationFunction>
  			<_Imax class_id="11" tracking_level="0" version="0">
  				<count>3</count>
! 				<item class_id="12" tracking_level="1" version="0" object_id="_5">
  					<ABQ class_id="13" tracking_level="0" version="0">
  						<namestring>time</namestring>
--- 37,45 ----
  		<boundary0>0</boundary0>
  		<boundary1>1</boundary1>
! 		<etExcitation0 class_id="9" tracking_level="1" version="0" object_id="_3">
  			<ExcitationFunction class_id="10" tracking_level="0" version="0"></ExcitationFunction>
  			<_Imax class_id="11" tracking_level="0" version="0">
  				<count>3</count>
! 				<item class_id="12" tracking_level="0" version="0">
  					<ABQ class_id="13" tracking_level="0" version="0">
  						<namestring>time</namestring>
***************
*** 48,52 ****
  					<_value>0</_value>
  				</item>
! 				<item object_id="_6">
  					<ABQ>
  						<namestring></namestring>
--- 48,52 ----
  					<_value>0</_value>
  				</item>
! 				<item>
  					<ABQ>
  						<namestring></namestring>
***************
*** 55,59 ****
  					<_value>0.5</_value>
  				</item>
! 				<item object_id="_7">
  					<ABQ>
  						<namestring></namestring>
--- 55,59 ----
  					<_value>0.5</_value>
  				</item>
! 				<item>
  					<ABQ>
  						<namestring></namestring>
***************
*** 65,72 ****
  			<_segments class_id="14" tracking_level="0" version="0">
  				<count>2</count>
! 				<item class_id="16" class_name="LinearSegment_doubleVoltElectricPotentialVariable_doubleSecondTimeVariable" tracking_level="1" version="0" object_id="_8">
! 					<Base class_id="15" tracking_level="1" version="0" object_id="_9">
! 						<Segment class_id="17" tracking_level="1" version="0" object_id="_10"></Segment>
! 						<_Imax object_id="_11">
  							<ABQ>
  								<namestring></namestring>
--- 65,72 ----
  			<_segments class_id="14" tracking_level="0" version="0">
  				<count>2</count>
! 				<item class_id="15" class_name="ExcitationFunctions::Segments::LinearEtSegment" tracking_level="1" version="0" object_id="_4">
! 					<Base class_id="16" tracking_level="0" version="0">
! 						<Segment class_id="17" tracking_level="0" version="0"></Segment>
! 						<_Imax>
  							<ABQ>
  								<namestring></namestring>
***************
*** 76,80 ****
  						</_Imax>
  					</Base>
! 					<_startingValue class_id="18" tracking_level="1" version="0" object_id="_12">
  						<ABQ class_id="19" tracking_level="0" version="0">
  							<namestring>electric potential</namestring>
--- 76,80 ----
  						</_Imax>
  					</Base>
! 					<_startingValue class_id="18" tracking_level="0" version="0">
  						<ABQ class_id="19" tracking_level="0" version="0">
  							<namestring>electric potential</namestring>
***************
*** 83,87 ****
  						<_value>0</_value>
  					</_startingValue>
! 					<_endValue object_id="_13">
  						<ABQ>
  							<namestring>electric potential</namestring>
--- 83,87 ----
  						<_value>0</_value>
  					</_startingValue>
! 					<_endValue>
  						<ABQ>
  							<namestring>electric potential</namestring>
***************
*** 90,94 ****
  						<_value>0.5</_value>
  					</_endValue>
! 					<_derivative class_id="20" tracking_level="1" version="0" object_id="_14">
  						<ABQ class_id="21" tracking_level="0" version="0">
  							<namestring></namestring>
--- 90,94 ----
  						<_value>0.5</_value>
  					</_endValue>
! 					<_derivative class_id="20" tracking_level="0" version="0">
  						<ABQ class_id="21" tracking_level="0" version="0">
  							<namestring></namestring>
***************
*** 98,105 ****
  					</_derivative>
  				</item>
! 				<item class_id_reference="16" object_id="_15">
! 					<Base object_id="_16">
! 						<Segment object_id="_17"></Segment>
! 						<_Imax object_id="_18">
  							<ABQ>
  								<namestring></namestring>
--- 98,105 ----
  					</_derivative>
  				</item>
! 				<item class_id_reference="15" object_id="_5">
! 					<Base>
! 						<Segment></Segment>
! 						<_Imax>
  							<ABQ>
  								<namestring></namestring>
***************
*** 109,113 ****
  						</_Imax>
  					</Base>
! 					<_startingValue object_id="_19">
  						<ABQ>
  							<namestring>electric potential</namestring>
--- 109,113 ----
  						</_Imax>
  					</Base>
! 					<_startingValue>
  						<ABQ>
  							<namestring>electric potential</namestring>
***************
*** 116,120 ****
  						<_value>0.5</_value>
  					</_startingValue>
! 					<_endValue object_id="_20">
  						<ABQ>
  							<namestring>electric potential</namestring>
--- 116,120 ----
  						<_value>0.5</_value>
  					</_startingValue>
! 					<_endValue>
  						<ABQ>
  							<namestring>electric potential</namestring>
***************
*** 123,127 ****
  						<_value>0</_value>
  					</_endValue>
! 					<_derivative object_id="_21">
  						<ABQ>
  							<namestring></namestring>
--- 123,127 ----
  						<_value>0</_value>
  					</_endValue>
! 					<_derivative>
  						<ABQ>
  							<namestring></namestring>
***************
*** 133,141 ****
  			</_segments>
  		</etExcitation0>
! 		<etExcitation1 object_id="_22">
  			<ExcitationFunction></ExcitationFunction>
  			<_Imax>
  				<count>1</count>
! 				<item object_id="_23">
  					<ABQ>
  						<namestring>time</namestring>
--- 133,141 ----
  			</_segments>
  		</etExcitation0>
! 		<etExcitation1 object_id="_6">
  			<ExcitationFunction></ExcitationFunction>
  			<_Imax>
  				<count>1</count>
! 				<item>
  					<ABQ>
  						<namestring>time</namestring>
***************
*** 149,157 ****
  			</_segments>
  		</etExcitation1>
! 		<itExcitation0 class_id="22" tracking_level="1" version="0" object_id="_24">
  			<ExcitationFunction></ExcitationFunction>
  			<_Imax>
  				<count>1</count>
! 				<item object_id="_25">
  					<ABQ>
  						<namestring>time</namestring>
--- 149,157 ----
  			</_segments>
  		</etExcitation1>
! 		<itExcitation0 class_id="22" tracking_level="1" version="0" object_id="_7">
  			<ExcitationFunction></ExcitationFunction>
  			<_Imax>
  				<count>1</count>
! 				<item>
  					<ABQ>
  						<namestring>time</namestring>
***************
*** 165,173 ****
  			</_segments>
  		</itExcitation0>
! 		<itExcitation1 object_id="_26">
  			<ExcitationFunction></ExcitationFunction>
  			<_Imax>
  				<count>1</count>
! 				<item object_id="_27">
  					<ABQ>
  						<namestring>time</namestring>
--- 165,173 ----
  			</_segments>
  		</itExcitation0>
! 		<itExcitation1 object_id="_8">
  			<ExcitationFunction></ExcitationFunction>
  			<_Imax>
  				<count>1</count>
! 				<item>
  					<ABQ>
  						<namestring>time</namestring>
***************
*** 181,374 ****
  			</_segments>
  		</itExcitation1>
! 		<chargeBalance>0</chargeBalance>
! 		<stoichiometricBalance>1</stoichiometricBalance>
! 		<mechanism>A         &lt;=&gt; B + e-;  b&lt;0&gt;;
! 
! </mechanism>
! 		<activeBoundaries>
! 			<count>1</count>
! 			<item>0</item>
! 		</activeBoundaries>
! 		<temp class_id="25" tracking_level="1" version="0" object_id="_28">
! 			<ABQ class_id="26" tracking_level="0" version="0">
! 				<namestring>temperature</namestring>
! 				<symbolstring>T</symbolstring>
! 			</ABQ>
! 			<_value>293.14999999999998</_value>
! 		</temp>
! 		<area class_id="27" tracking_level="1" version="0" object_id="_29">
! 			<ABQ class_id="28" tracking_level="0" version="0">
! 				<namestring>area</namestring>
! 				<symbolstring>A</symbolstring>
! 			</ABQ>
! 			<_value>6.0000000000000002e-06</_value>
! 		</area>
! 		<dissConcs class_id="29" tracking_level="0" version="0">
! 			<count>2</count>
! 			<item class_id="30" tracking_level="0" version="0">
! 				<first>0</first>
! 				<second class_id="31" tracking_level="1" version="0" object_id="_30">
! 					<ABQ class_id="32" tracking_level="0" version="0">
! 						<namestring>concentration</namestring>
! 						<symbolstring>c</symbolstring>
! 					</ABQ>
! 					<_value>0.0001</_value>
! 				</second>
! 			</item>
! 			<item>
! 				<first>1</first>
! 				<second object_id="_31">
! 					<ABQ>
! 						<namestring>concentration</namestring>
! 						<symbolstring>c</symbolstring>
! 					</ABQ>
! 					<_value>0</_value>
! 				</second>
! 			</item>
! 		</dissConcs>
! 		<refDissConc object_id="_32">
! 			<ABQ>
! 				<namestring>concentration</namestring>
! 				<symbolstring>c</symbolstring>
! 			</ABQ>
! 			<_value>0.0001</_value>
! 		</refDissConc>
! 		<refConcIndex>0</refConcIndex>
! 		<adsConcs class_id="33" tracking_level="0" version="0">
! 			<count>0</count>
! 		</adsConcs>
! 		<saturationConcs class_id="34" tracking_level="0" version="0">
! 			<count>0</count>
! 		</saturationConcs>
! 		<diffCoeffs class_id="35" tracking_level="0" version="0">
! 			<count>2</count>
! 			<item class_id="36" tracking_level="0" version="0">
! 				<first>0</first>
! 				<second class_id="37" tracking_level="1" version="0" object_id="_33">
! 					<ABQ class_id="38" tracking_level="0" version="0">
! 						<namestring>diffusioncoefficient</namestring>
! 						<symbolstring>D</symbolstring>
! 					</ABQ>
! 					<_value>1.0000000000000001e-09</_value>
! 				</second>
! 			</item>
! 			<item>
! 				<first>1</first>
! 				<second object_id="_34">
! 					<ABQ>
! 						<namestring>diffusioncoefficient</namestring>
! 						<symbolstring>D</symbolstring>
! 					</ABQ>
! 					<_value>1.0000000000000001e-09</_value>
! 				</second>
! 			</item>
! 		</diffCoeffs>
! 		<refDiffCoeff object_id="_35">
! 			<ABQ>
! 				<namestring>diffusioncoefficient</namestring>
! 				<symbolstring>D</symbolstring>
! 			</ABQ>
! 			<_value>1.0000000000000001e-09</_value>
! 		</refDiffCoeff>
! 		<maxDiffCoeff>1</maxDiffCoeff>
! 		<formalPotentials class_id="39" tracking_level="0" version="0">
! 			<count>1</count>
! 			<item class_id="40" tracking_level="0" version="0">
! 				<first>0</first>
! 				<second object_id="_36">
! 					<ABQ>
! 						<namestring>electric potential</namestring>
! 						<symbolstring>E</symbolstring>
! 					</ABQ>
! 					<_value>0.25</_value>
! 				</second>
! 			</item>
! 		</formalPotentials>
! 		<alphas class_id="41" tracking_level="0" version="0">
! 			<count>1</count>
! 			<item class_id="42" tracking_level="0" version="0">
! 				<first>0</first>
! 				<second>0.5</second>
! 			</item>
! 		</alphas>
! 		<khs class_id="43" tracking_level="0" version="0">
! 			<count>1</count>
! 			<item class_id="44" tracking_level="0" version="0">
! 				<first>0</first>
! 				<second class_id="45" tracking_level="1" version="0" object_id="_37">
! 					<ABQ class_id="46" tracking_level="0" version="0">
! 						<namestring>heterogeneousrateconstant</namestring>
! 						<symbolstring>k_s</symbolstring>
! 					</ABQ>
! 					<_value>0.01</_value>
! 				</second>
! 			</item>
! 		</khs>
! 		<langEquilConstants class_id="47" tracking_level="0" version="0">
! 			<count>0</count>
! 		</langEquilConstants>
! 		<langAdsRateConstants class_id="48" tracking_level="0" version="0">
! 			<count>0</count>
! 		</langAdsRateConstants>
! 		<firstOrderRateConstants class_id="49" tracking_level="0" version="0">
! 			<count>0</count>
! 		</firstOrderRateConstants>
! 		<homEquilibriumConstants>
! 			<count>0</count>
! 		</homEquilibriumConstants>
! 		<homForwardRateConstants>
! 			<count>0</count>
! 		</homForwardRateConstants>
! 		<homBackwardRateConstants>
! 			<count>0</count>
! 		</homBackwardRateConstants>
! 		<homSurfEquilibriumConstants>
! 			<count>0</count>
! 		</homSurfEquilibriumConstants>
! 		<homSurfForwardRateConstants>
! 			<count>0</count>
! 		</homSurfForwardRateConstants>
! 		<homSurfBackwardRateConstants>
! 			<count>0</count>
! 		</homSurfBackwardRateConstants>
! 		<hetSurfEquilibriumConstants>
! 			<count>0</count>
! 		</hetSurfEquilibriumConstants>
! 		<hetSurfForwardRateConstants>
! 			<count>0</count>
! 		</hetSurfForwardRateConstants>
! 		<hetSurfBackwardRateConstants>
! 			<count>0</count>
! 		</hetSurfBackwardRateConstants>
! 		<fixed>
! 			<count>0</count>
! 		</fixed>
! 		<numRowsDissSpecies>2</numRowsDissSpecies>
! 		<numRowsAdsSpecies>0</numRowsAdsSpecies>
! 		<numRowsSaturation>0</numRowsSaturation>
! 		<numRowsBvDiss>1</numRowsBvDiss>
! 		<numRowsBvAds>0</numRowsBvAds>
! 		<numRowsLangmuir>0</numRowsLangmuir>
! 		<numRowsHomPower>0</numRowsHomPower>
! 		<numRowsHomGen>0</numRowsHomGen>
! 		<numColsHomGen>0</numColsHomGen>
! 		<numRowsHomSurfPower>0</numRowsHomSurfPower>
! 		<numRowsHomSurfGen>0</numRowsHomSurfGen>
! 		<numColsHomSurfGen>0</numColsHomSurfGen>
! 		<numRowsHetSurfPower>0</numRowsHetSurfPower>
! 		<numRowsHetSurfGen>0</numRowsHetSurfGen>
! 		<numColsHetSurfGen>0</numColsHetSurfGen>
! 		<genParams class_id="51" tracking_level="0" version="0">
! 			<count>0</count>
! 		</genParams>
! 		<genColsParams class_id="52" tracking_level="0" version="0">
! 			<count>0</count>
! 		</genColsParams>
! 		<genParamsCols class_id="53" tracking_level="0" version="0">
! 			<count>0</count>
! 		</genParamsCols>
! 		<genParamsValues class_id="54" tracking_level="0" version="0">
! 			<count>0</count>
! 		</genParamsValues>
  		<maxTime>100</maxTime>
  		<accuracy>0.001</accuracy>
--- 181,376 ----
  			</_segments>
  		</itExcitation1>
! 		<mc class_id="24" tracking_level="0" version="0">
! 			<chargeBalance>0</chargeBalance>
! 			<stoichiometricBalance>1</stoichiometricBalance>
! 			<mechanism>A &lt;=&gt; B + e-;  b&lt;0&gt;;</mechanism>
! 			<activeBoundaries>
! 				<count>1</count>
! 				<item>0</item>
! 			</activeBoundaries>
! 		</mc>
! 		<mpc class_id="26" tracking_level="0" version="0">
! 			<temp class_id="27" tracking_level="0" version="0">
! 				<ABQ class_id="28" tracking_level="0" version="0">
! 					<namestring>temperature</namestring>
! 					<symbolstring>T</symbolstring>
! 				</ABQ>
! 				<_value>293.14999999999998</_value>
! 			</temp>
! 			<area class_id="29" tracking_level="0" version="0">
! 				<ABQ class_id="30" tracking_level="0" version="0">
! 					<namestring>area</namestring>
! 					<symbolstring>A</symbolstring>
! 				</ABQ>
! 				<_value>6.0000000000000002e-06</_value>
! 			</area>
! 			<dissConcs class_id="31" tracking_level="0" version="0">
! 				<count>2</count>
! 				<item class_id="32" tracking_level="0" version="0">
! 					<first>0</first>
! 					<second class_id="33" tracking_level="0" version="0">
! 						<ABQ class_id="34" tracking_level="0" version="0">
! 							<namestring>concentration</namestring>
! 							<symbolstring>c</symbolstring>
! 						</ABQ>
! 						<_value>0.0001</_value>
! 					</second>
! 				</item>
! 				<item>
! 					<first>1</first>
! 					<second>
! 						<ABQ>
! 							<namestring>concentration</namestring>
! 							<symbolstring>c</symbolstring>
! 						</ABQ>
! 						<_value>0</_value>
! 					</second>
! 				</item>
! 			</dissConcs>
! 			<refDissConc>
! 				<ABQ>
! 					<namestring>concentration</namestring>
! 					<symbolstring>c</symbolstring>
! 				</ABQ>
! 				<_value>0.0001</_value>
! 			</refDissConc>
! 			<refConcIndex>0</refConcIndex>
! 			<adsConcs class_id="35" tracking_level="0" version="0">
! 				<count>0</count>
! 			</adsConcs>
! 			<saturationConcs class_id="36" tracking_level="0" version="0">
! 				<count>0</count>
! 			</saturationConcs>
! 			<diffCoeffs class_id="37" tracking_level="0" version="0">
! 				<count>2</count>
! 				<item class_id="38" tracking_level="0" version="0">
! 					<first>0</first>
! 					<second class_id="39" tracking_level="0" version="0">
! 						<ABQ class_id="40" tracking_level="0" version="0">
! 							<namestring>diffusioncoefficient</namestring>
! 							<symbolstring>D</symbolstring>
! 						</ABQ>
! 						<_value>1.0000000000000001e-09</_value>
! 					</second>
! 				</item>
! 				<item>
! 					<first>1</first>
! 					<second>
! 						<ABQ>
! 							<namestring>diffusioncoefficient</namestring>
! 							<symbolstring>D</symbolstring>
! 						</ABQ>
! 						<_value>1.0000000000000001e-09</_value>
! 					</second>
! 				</item>
! 			</diffCoeffs>
! 			<refDiffCoeff>
! 				<ABQ>
! 					<namestring>diffusioncoefficient</namestring>
! 					<symbolstring>D</symbolstring>
! 				</ABQ>
! 				<_value>1.0000000000000001e-09</_value>
! 			</refDiffCoeff>
! 			<maxDiffCoeff>1</maxDiffCoeff>
! 			<formalPotentials class_id="41" tracking_level="0" version="0">
! 				<count>1</count>
! 				<item class_id="42" tracking_level="0" version="0">
! 					<first>0</first>
! 					<second>
! 						<ABQ>
! 							<namestring>electric potential</namestring>
! 							<symbolstring>E</symbolstring>
! 						</ABQ>
! 						<_value>0.25</_value>
! 					</second>
! 				</item>
! 			</formalPotentials>
! 			<alphas class_id="43" tracking_level="0" version="0">
! 				<count>1</count>
! 				<item class_id="44" tracking_level="0" version="0">
! 					<first>0</first>
! 					<second>0.5</second>
! 				</item>
! 			</alphas>
! 			<khs class_id="45" tracking_level="0" version="0">
! 				<count>1</count>
! 				<item class_id="46" tracking_level="0" version="0">
! 					<first>0</first>
! 					<second class_id="47" tracking_level="0" version="0">
! 						<ABQ class_id="48" tracking_level="0" version="0">
! 							<namestring>heterogeneousrateconstant</namestring>
! 							<symbolstring>k_s</symbolstring>
! 						</ABQ>
! 						<_value>0.01</_value>
! 					</second>
! 				</item>
! 			</khs>
! 			<langEquilConstants class_id="49" tracking_level="0" version="0">
! 				<count>0</count>
! 			</langEquilConstants>
! 			<langAdsRateConstants class_id="50" tracking_level="0" version="0">
! 				<count>0</count>
! 			</langAdsRateConstants>
! 			<firstOrderRateConstants class_id="51" tracking_level="0" version="0">
! 				<count>0</count>
! 			</firstOrderRateConstants>
! 			<homEquilibriumConstants>
! 				<count>0</count>
! 			</homEquilibriumConstants>
! 			<homForwardRateConstants>
! 				<count>0</count>
! 			</homForwardRateConstants>
! 			<homBackwardRateConstants>
! 				<count>0</count>
! 			</homBackwardRateConstants>
! 			<homSurfEquilibriumConstants>
! 				<count>0</count>
! 			</homSurfEquilibriumConstants>
! 			<homSurfForwardRateConstants>
! 				<count>0</count>
! 			</homSurfForwardRateConstants>
! 			<homSurfBackwardRateConstants>
! 				<count>0</count>
! 			</homSurfBackwardRateConstants>
! 			<hetSurfEquilibriumConstants>
! 				<count>0</count>
! 			</hetSurfEquilibriumConstants>
! 			<hetSurfForwardRateConstants>
! 				<count>0</count>
! 			</hetSurfForwardRateConstants>
! 			<hetSurfBackwardRateConstants>
! 				<count>0</count>
! 			</hetSurfBackwardRateConstants>
! 			<fixed>
! 				<count>0</count>
! 			</fixed>
! 			<numRowsDissSpecies>2</numRowsDissSpecies>
! 			<numRowsAdsSpecies>0</numRowsAdsSpecies>
! 			<numRowsSaturation>0</numRowsSaturation>
! 			<numRowsBvDiss>1</numRowsBvDiss>
! 			<numRowsBvAds>0</numRowsBvAds>
! 			<numRowsLangmuir>0</numRowsLangmuir>
! 			<numRowsHomPower>0</numRowsHomPower>
! 			<numRowsHomGen>0</numRowsHomGen>
! 			<numColsHomGen>0</numColsHomGen>
! 			<numRowsHomSurfPower>0</numRowsHomSurfPower>
! 			<numRowsHomSurfGen>0</numRowsHomSurfGen>
! 			<numColsHomSurfGen>0</numColsHomSurfGen>
! 			<numRowsHetSurfPower>0</numRowsHetSurfPower>
! 			<numRowsHetSurfGen>0</numRowsHetSurfGen>
! 			<numColsHetSurfGen>0</numColsHetSurfGen>
! 			<genParams class_id="53" tracking_level="0" version="0">
! 				<count>0</count>
! 			</genParams>
! 			<genColsParams class_id="54" tracking_level="0" version="0">
! 				<count>0</count>
! 			</genColsParams>
! 			<genParamsCols class_id="55" tracking_level="0" version="0">
! 				<count>0</count>
! 			</genParamsCols>
! 			<genParamsValues class_id="56" tracking_level="0" version="0">
! 				<count>0</count>
! 			</genParamsValues>
! 		</mpc>
  		<maxTime>100</maxTime>
  		<accuracy>0.001</accuracy>
***************
*** 403,416 ****
  			<count>0</count>
  		</timeSteps>
! 		<profiles class_id="56" tracking_level="0" version="0">
  			<count>0</count>
  		</profiles>
! 		<homReactions>0</homReactions>
! 		<ads>0</ads>
! 		<homSurfReactions>0</homSurfReactions>
  		<hetSurfReactions>0</hetSurfReactions>
  		<plotDiss>0</plotDiss>
  		<plotAds>0</plotAds>
! 		<sc class_id="57" tracking_level="1" version="0" object_id="_38">
  			<rho>0.11111111111111108</rho>
  			<TOL>0.02</TOL>
--- 405,418 ----
  			<count>0</count>
  		</timeSteps>
! 		<profiles class_id="58" tracking_level="0" version="0">
  			<count>0</count>
  		</profiles>
! 		<homReactions>1</homReactions>
! 		<ads>1</ads>
! 		<homSurfReactions>1</homSurfReactions>
  		<hetSurfReactions>0</hetSurfReactions>
  		<plotDiss>0</plotDiss>
  		<plotAds>0</plotAds>
! 		<sc class_id="59" tracking_level="0" version="0">
  			<rho>0.11111111111111108</rho>
  			<TOL>0.02</TOL>
***************
*** 463,469 ****
  		<visConcProfiles>0</visConcProfiles>
  	</cond_data>
! 	<meas_data class_id="59" class_name="MeasurementDataModSim" tracking_level="1" version="0" object_id="_39">
! 		<MeasurementData class_id="58" tracking_level="1" version="0" object_id="_40"></MeasurementData>
! 		<responseCurves class_id="60" tracking_level="0" version="0">
  			<count>0</count>
  		</responseCurves>
--- 465,471 ----
  		<visConcProfiles>0</visConcProfiles>
  	</cond_data>
! 	<meas_data class_id="61" class_name="experiment::MeasurementDataModSim" tracking_level="1" version="0" object_id="_9">
! 		<MeasurementData class_id="60" tracking_level="1" version="0" object_id="_10"></MeasurementData>
! 		<responseCurves class_id="62" tracking_level="0" version="0">
  			<count>0</count>
  		</responseCurves>

Index: example8.xml
===================================================================
RCS file: /cvsroot/echempp/examples/example8.xml,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** example8.xml	19 Dec 2007 13:58:29 -0000	1.2
--- example8.xml	27 Dec 2007 19:23:11 -0000	1.3
***************
*** 2,9 ****
  <!DOCTYPE boost_serialization>
  <boost_serialization signature="serialization::archive" version="3">
! <ep class_id="0" class_name="Induced_Simulated_Dynamic_doubleSecondTimeVariable_doubleVoltElectricPotentialVariable_doubleAmpereElectricCurrentVariable" tracking_level="1" version="0" object_id="_0">
  	<_AtomicBase class_id="1" tracking_level="0" version="0">
  		<Experiment class_id="2" tracking_level="0" version="0">
! 			<title_>Insert Experiment title</title_>
  		</Experiment>
  	</_AtomicBase>
--- 2,9 ----
  <!DOCTYPE boost_serialization>
  <boost_serialization signature="serialization::archive" version="3">
! <ep class_id="0" class_name="experiment::cv::SimInduced" tracking_level="1" version="0" object_id="_0">
  	<_AtomicBase class_id="1" tracking_level="0" version="0">
  		<Experiment class_id="2" tracking_level="0" version="0">
! 			<title_>/home/dome/echempp/examples/example8.xml</title_>
  		</Experiment>
  	</_AtomicBase>
***************
*** 18,22 ****
  		</ptime_date>
  	</induction_end>
! 	<cond_data class_id="6" class_name="ConditionDataModSim" tracking_level="1" version="0" object_id="_1">
  		<ConditionData class_id="5" tracking_level="1" version="0" object_id="_2"></ConditionData>
  		<safety>3</safety>
--- 18,22 ----
  		</ptime_date>
  	</induction_end>
! 	<cond_data class_id="6" class_name="experiment::ConditionDataModSim" tracking_level="1" version="0" object_id="_1">
  		<ConditionData class_id="5" tracking_level="1" version="0" object_id="_2"></ConditionData>
  		<safety>3</safety>
***************
*** 24,28 ****
  		<currentControlled>0</currentControlled>
  		<potentialControlled>1</potentialControlled>
! 		<finiteDistance class_id="7" tracking_level="1" version="0" object_id="_3">
  			<ABQ class_id="8" tracking_level="0" version="0">
  				<namestring>length</namestring>
--- 24,28 ----
  		<currentControlled>0</currentControlled>
  		<potentialControlled>1</potentialControlled>
! 		<finiteDistance class_id="7" tracking_level="0" version="0">
  			<ABQ class_id="8" tracking_level="0" version="0">
  				<namestring>length</namestring>
***************
*** 33,45 ****
  		<num_electrodes>2</num_electrodes>
  		<dimension>1</dimension>
! 		<technique0>CV</technique0>
  		<technique1>CV</technique1>
  		<boundary0>0</boundary0>
  		<boundary1>1</boundary1>
! 		<etExcitation0 class_id="9" tracking_level="1" version="0" object_id="_4">
  			<ExcitationFunction class_id="10" tracking_level="0" version="0"></ExcitationFunction>
  			<_Imax class_id="11" tracking_level="0" version="0">
! 				<count>3</count>
! 				<item class_id="12" tracking_level="1" version="0" object_id="_5">
  					<ABQ class_id="13" tracking_level="0" version="0">
  						<namestring>time</namestring>
--- 33,45 ----
  		<num_electrodes>2</num_electrodes>
  		<dimension>1</dimension>
! 		<technique0>User Defined</technique0>
  		<technique1>CV</technique1>
  		<boundary0>0</boundary0>
  		<boundary1>1</boundary1>
! 		<etExcitation0 class_id="9" tracking_level="1" version="0" object_id="_3">
  			<ExcitationFunction class_id="10" tracking_level="0" version="0"></ExcitationFunction>
  			<_Imax class_id="11" tracking_level="0" version="0">
! 				<count>4</count>
! 				<item class_id="12" tracking_level="0" version="0">
  					<ABQ class_id="13" tracking_level="0" version="0">
  						<namestring>time</namestring>
***************
*** 48,80 ****
  					<_value>0</_value>
  				</item>
! 				<item object_id="_6">
  					<ABQ>
  						<namestring></namestring>
  						<symbolstring></symbolstring>
  					</ABQ>
! 					<_value>0.5</_value>
  				</item>
! 				<item object_id="_7">
  					<ABQ>
  						<namestring></namestring>
  						<symbolstring></symbolstring>
  					</ABQ>
! 					<_value>1</_value>
  				</item>
  			</_Imax>
  			<_segments class_id="14" tracking_level="0" version="0">
! 				<count>2</count>
! 				<item class_id="16" class_name="LinearSegment_doubleVoltElectricPotentialVariable_doubleSecondTimeVariable" tracking_level="1" version="0" object_id="_8">
! 					<Base class_id="15" tracking_level="1" version="0" object_id="_9">
! 						<Segment class_id="17" tracking_level="1" version="0" object_id="_10"></Segment>
! 						<_Imax object_id="_11">
  							<ABQ>
  								<namestring></namestring>
  								<symbolstring></symbolstring>
  							</ABQ>
! 							<_value>0.5</_value>
  						</_Imax>
  					</Base>
! 					<_startingValue class_id="18" tracking_level="1" version="0" object_id="_12">
  						<ABQ class_id="19" tracking_level="0" version="0">
  							<namestring>electric potential</namestring>
--- 48,87 ----
  					<_value>0</_value>
  				</item>
! 				<item>
  					<ABQ>
  						<namestring></namestring>
  						<symbolstring></symbolstring>
  					</ABQ>
! 					<_value>1</_value>
  				</item>
! 				<item>
! 					<ABQ>
! 						<namestring>time</namestring>
! 						<symbolstring>t</symbolstring>
! 					</ABQ>
! 					<_value>2</_value>
! 				</item>
! 				<item>
  					<ABQ>
  						<namestring></namestring>
  						<symbolstring></symbolstring>
  					</ABQ>
! 					<_value>3.3999999999999999</_value>
  				</item>
  			</_Imax>
  			<_segments class_id="14" tracking_level="0" version="0">
! 				<count>3</count>
! 				<item class_id="15" class_name="ExcitationFunctions::Segments::LinearEtSegment" tracking_level="1" version="0" object_id="_4">
! 					<Base class_id="16" tracking_level="0" version="0">
! 						<Segment class_id="17" tracking_level="0" version="0"></Segment>
! 						<_Imax>
  							<ABQ>
  								<namestring></namestring>
  								<symbolstring></symbolstring>
  							</ABQ>
! 							<_value>1</_value>
  						</_Imax>
  					</Base>
! 					<_startingValue class_id="18" tracking_level="0" version="0">
  						<ABQ class_id="19" tracking_level="0" version="0">
  							<namestring>electric potential</namestring>
***************
*** 83,87 ****
  						<_value>0</_value>
  					</_startingValue>
! 					<_endValue object_id="_13">
  						<ABQ>
  							<namestring>electric potential</namestring>
--- 90,94 ----
  						<_value>0</_value>
  					</_startingValue>
! 					<_endValue>
  						<ABQ>
  							<namestring>electric potential</namestring>
***************
*** 90,113 ****
  						<_value>0.5</_value>
  					</_endValue>
! 					<_derivative class_id="20" tracking_level="1" version="0" object_id="_14">
  						<ABQ class_id="21" tracking_level="0" version="0">
  							<namestring></namestring>
  							<symbolstring></symbolstring>
  						</ABQ>
! 						<_value>1</_value>
  					</_derivative>
  				</item>
! 				<item class_id_reference="16" object_id="_15">
! 					<Base object_id="_16">
! 						<Segment object_id="_17"></Segment>
! 						<_Imax object_id="_18">
  							<ABQ>
  								<namestring></namestring>
  								<symbolstring></symbolstring>
  							</ABQ>
! 							<_value>0.5</_value>
  						</_Imax>
  					</Base>
! 					<_startingValue object_id="_19">
  						<ABQ>
  							<namestring>electric potential</namestring>
--- 97,139 ----
  						<_value>0.5</_value>
  					</_endValue>
! 					<_derivative class_id="20" tracking_level="0" version="0">
  						<ABQ class_id="21" tracking_level="0" version="0">
  							<namestring></namestring>
  							<symbolstring></symbolstring>
  						</ABQ>
! 						<_value>0.5</_value>
  					</_derivative>
  				</item>
! 				<item class_id="22" class_name="ExcitationFunctions::Segments::ConstantEtSegment" tracking_level="1" version="0" object_id="_5">
! 					<Base>
! 						<Segment></Segment>
! 						<_Imax>
! 							<ABQ>
! 								<namestring>time</namestring>
! 								<symbolstring>t</symbolstring>
! 							</ABQ>
! 							<_value>1</_value>
! 						</_Imax>
! 					</Base>
! 					<_constantValue>
! 						<ABQ>
! 							<namestring>electric potential</namestring>
! 							<symbolstring>E</symbolstring>
! 						</ABQ>
! 						<_value>0.5</_value>
! 					</_constantValue>
! 				</item>
! 				<item class_id_reference="15" object_id="_6">
! 					<Base>
! 						<Segment></Segment>
! 						<_Imax>
  							<ABQ>
  								<namestring></namestring>
  								<symbolstring></symbolstring>
  							</ABQ>
! 							<_value>1.3999999999999999</_value>
  						</_Imax>
  					</Base>
! 					<_startingValue>
  						<ABQ>
  							<namestring>electric potential</namestring>
***************
*** 116,141 ****
  						<_value>0.5</_value>
  					</_startingValue>
! 					<_endValue object_id="_20">
  						<ABQ>
  							<namestring>electric potential</namestring>
  							<symbolstring>E</symbolstring>
  						</ABQ>
! 						<_value>0</_value>
  					</_endValue>
! 					<_derivative object_id="_21">
  						<ABQ>
  							<namestring></namestring>
  							<symbolstring></symbolstring>
  						</ABQ>
! 						<_value>-1</_value>
  					</_derivative>
  				</item>
  			</_segments>
  		</etExcitation0>
! 		<etExcitation1 object_id="_22">
  			<ExcitationFunction></ExcitationFunction>
  			<_Imax>
  				<count>1</count>
! 				<item object_id="_23">
  					<ABQ>
  						<namestring>time</namestring>
--- 142,167 ----
  						<_value>0.5</_value>
  					</_startingValue>
! 					<_endValue>
  						<ABQ>
  							<namestring>electric potential</namestring>
  							<symbolstring>E</symbolstring>
  						</ABQ>
! 						<_value>-0.20000000000000001</_value>
  					</_endValue>
! 					<_derivative>
  						<ABQ>
  							<namestring></namestring>
  							<symbolstring></symbolstring>
  						</ABQ>
! 						<_value>-0.5</_value>
  					</_derivative>
  				</item>
  			</_segments>
  		</etExcitation0>
! 		<etExcitation1 object_id="_7">
  			<ExcitationFunction></ExcitationFunction>
  			<_Imax>
  				<count>1</count>
! 				<item>
  					<ABQ>
  						<namestring>time</namestring>
***************
*** 149,157 ****
  			</_segments>
  		</etExcitation1>
! 		<itExcitation0 class_id="22" tracking_level="1" version="0" object_id="_24">
  			<ExcitationFunction></ExcitationFunction>
  			<_Imax>
  				<count>1</count>
! 				<item object_id="_25">
  					<ABQ>
  						<namestring>time</namestring>
--- 175,183 ----
  			</_segments>
  		</etExcitation1>
! 		<itExcitation0 class_id="23" tracking_level="1" version="0" object_id="_8">
  			<ExcitationFunction></ExcitationFunction>
  			<_Imax>
  				<count>1</count>
! 				<item>
  					<ABQ>
  						<namestring>time</namestring>
***************
*** 161,173 ****
  				</item>
  			</_Imax>
! 			<_segments class_id="23" tracking_level="0" version="0">
  				<count>0</count>
  			</_segments>
  		</itExcitation0>
! 		<itExcitation1 object_id="_26">
  			<ExcitationFunction></ExcitationFunction>
  			<_Imax>
  				<count>1</count>
! 				<item object_id="_27">
  					<ABQ>
  						<namestring>time</namestring>
--- 187,199 ----
  				</item>
  			</_Imax>
! 			<_segments class_id="24" tracking_level="0" version="0">
  				<count>0</count>
  			</_segments>
  		</itExcitation0>
! 		<itExcitation1 object_id="_9">
  			<ExcitationFunction></ExcitationFunction>
  			<_Imax>
  				<count>1</count>
! 				<item>
  					<ABQ>
  						<namestring>time</namestring>
***************
*** 181,373 ****
  			</_segments>
  		</itExcitation1>
! 		<chargeBalance>0</chargeBalance>
! 		<stoichiometricBalance>1</stoichiometricBalance>
! 		<mechanism>A         &lt;=&gt; B + e-;  b&lt;0&gt;;
  </mechanism>
! 		<activeBoundaries>
! 			<count>1</count>
! 			<item>0</item>
! 		</activeBoundaries>
! 		<temp class_id="25" tracking_level="1" version="0" object_id="_28">
! 			<ABQ class_id="26" tracking_level="0" version="0">
! 				<namestring>temperature</namestring>
! 				<symbolstring>T</symbolstring>
! 			</ABQ>
! 			<_value>293.14999999999998</_value>
! 		</temp>
! 		<area class_id="27" tracking_level="1" version="0" object_id="_29">
! 			<ABQ class_id="28" tracking_level="0" version="0">
! 				<namestring>area</namestring>
! 				<symbolstring>A</symbolstring>
! 			</ABQ>
! 			<_value>6.0000000000000002e-06</_value>
! 		</area>
! 		<dissConcs class_id="29" tracking_level="0" version="0">
! 			<count>2</count>
! 			<item class_id="30" tracking_level="0" version="0">
! 				<first>0</first>
! 				<second class_id="31" tracking_level="1" version="0" object_id="_30">
! 					<ABQ class_id="32" tracking_level="0" version="0">
! 						<namestring>concentration</namestring>
! 						<symbolstring>c</symbolstring>
! 					</ABQ>
! 					<_value>0.0001</_value>
! 				</second>
! 			</item>
! 			<item>
! 				<first>1</first>
! 				<second object_id="_31">
! 					<ABQ>
! 						<namestring>concentration</namestring>
! 						<symbolstring>c</symbolstring>
! 					</ABQ>
! 					<_value>0</_value>
! 				</second>
! 			</item>
! 		</dissConcs>
! 		<refDissConc object_id="_32">
! 			<ABQ>
! 				<namestring>concentration</namestring>
! 				<symbolstring>c</symbolstring>
! 			</ABQ>
! 			<_value>0.0001</_value>
! 		</refDissConc>
! 		<refConcIndex>0</refConcIndex>
! 		<adsConcs class_id="33" tracking_level="0" version="0">
! 			<count>0</count>
! 		</adsConcs>
! 		<saturationConcs class_id="34" tracking_level="0" version="0">
! 			<count>0</count>
! 		</saturationConcs>
! 		<diffCoeffs class_id="35" tracking_level="0" version="0">
! 			<count>2</count>
! 			<item class_id="36" tracking_level="0" version="0">
! 				<first>0</first>
! 				<second class_id="37" tracking_level="1" version="0" object_id="_33">
! 					<ABQ class_id="38" tracking_level="0" version="0">
! 						<namestring>diffusioncoefficient</namestring>
! 						<symbolstring>D</symbolstring>
! 					</ABQ>
! 					<_value>1.0000000000000001e-09</_value>
! 				</second>
! 			</item>
! 			<item>
! 				<first>1</first>
! 				<second object_id="_34">
! 					<ABQ>
! 						<namestring>diffusioncoefficient</namestring>
! 						<symbolstring>D</symbolstring>
! 					</ABQ>
! 					<_value>1.0000000000000001e-09</_value>
! 				</second>
! 			</item>
! 		</diffCoeffs>
! 		<refDiffCoeff object_id="_35">
! 			<ABQ>
! 				<namestring>diffusioncoefficient</namestring>
! 				<symbolstring>D</symbolstring>
! 			</ABQ>
! 			<_value>1.0000000000000001e-09</_value>
! 		</refDiffCoeff>
! 		<maxDiffCoeff>1</maxDiffCoeff>
! 		<formalPotentials class_id="39" tracking_level="0" version="0">
! 			<count>1</count>
! 			<item class_id="40" tracking_level="0" version="0">
! 				<first>0</first>
! 				<second object_id="_36">
! 					<ABQ>
! 						<namestring>electric potential</namestring>
! 						<symbolstring>E</symbolstring>
! 					</ABQ>
! 					<_value>0.25</_value>
! 				</second>
! 			</item>
! 		</formalPotentials>
! 		<alphas class_id="41" tracking_level="0" version="0">
! 			<count>1</count>
! 			<item class_id="42" tracking_level="0" version="0">
! 				<first>0</first>
! 				<second>0.5</second>
! 			</item>
! 		</alphas>
! 		<khs class_id="43" tracking_level="0" version="0">
! 			<count>1</count>
! 			<item class_id="44" tracking_level="0" version="0">
! 				<first>0</first>
! 				<second class_id="45" tracking_level="1" version="0" object_id="_37">
! 					<ABQ class_id="46" tracking_level="0" version="0">
! 						<namestring>heterogeneousrateconstant</namestring>
! 						<symbolstring>k_s</symbolstring>
! 					</ABQ>
! 					<_value>0.01</_value>
! 				</second>
! 			</item>
! 		</khs>
! 		<langEquilConstants class_id="47" tracking_level="0" version="0">
! 			<count>0</count>
! 		</langEquilConstants>
! 		<langAdsRateConstants class_id="48" tracking_level="0" version="0">
! 			<count>0</count>
! 		</langAdsRateConstants>
! 		<firstOrderRateConstants class_id="49" tracking_level="0" version="0">
! 			<count>0</count>
! 		</firstOrderRateConstants>
! 		<homEquilibriumConstants>
! 			<count>0</count>
! 		</homEquilibriumConstants>
! 		<homForwardRateConstants>
! 			<count>0</count>
! 		</homForwardRateConstants>
! 		<homBackwardRateConstants>
! 			<count>0</count>
! 		</homBackwardRateConstants>
! 		<homSurfEquilibriumConstants>
! 			<count>0</count>
! 		</homSurfEquilibriumConstants>
! 		<homSurfForwardRateConstants>
! 			<count>0</count>
! 		</homSurfForwardRateConstants>
! 		<homSurfBackwardRateConstants>
! 			<count>0</count>
! 		</homSurfBackwardRateConstants>
! 		<hetSurfEquilibriumConstants>
! 			<count>0</count>
! 		</hetSurfEquilibriumConstants>
! 		<hetSurfForwardRateConstants>
! 			<count>0</count>
! 		</hetSurfForwardRateConstants>
! 		<hetSurfBackwardRateConstants>
! 			<count>0</count>
! 		</hetSurfBackwardRateConstants>
! 		<fixed>
! 			<count>0</count>
! 		</fixed>
! 		<numRowsDissSpecies>2</numRowsDissSpecies>
! 		<numRowsAdsSpecies>0</numRowsAdsSpecies>
! 		<numRowsSaturation>0</numRowsSaturation>
! 		<numRowsBvDiss>1</numRowsBvDiss>
! 		<numRowsBvAds>0</numRowsBvAds>
! 		<numRowsLangmuir>0</numRowsLangmuir>
! 		<numRowsHomPower>0</numRowsHomPower>
! 		<numRowsHomGen>0</numRowsHomGen>
! 		<numColsHomGen>0</numColsHomGen>
! 		<numRowsHomSurfPower>0</numRowsHomSurfPower>
! 		<numRowsHomSurfGen>0</numRowsHomSurfGen>
! 		<numColsHomSurfGen>0</numColsHomSurfGen>
! 		<numRowsHetSurfPower>0</numRowsHetSurfPower>
! 		<numRowsHetSurfGen>0</numRowsHetSurfGen>
! 		<numColsHetSurfGen>0</numColsHetSurfGen>
! 		<genParams class_id="51" tracking_level="0" version="0">
! 			<count>0</count>
! 		</genParams>
! 		<genColsParams class_id="52" tracking_level="0" version="0">
! 			<count>0</count>
! 		</genColsParams>
! 		<genParamsCols class_id="53" tracking_level="0" version="0">
! 			<count>0</count>
! 		</genParamsCols>
! 		<genParamsValues class_id="54" tracking_level="0" version="0">
! 			<count>0</count>
! 		</genParamsValues>
  		<maxTime>100</maxTime>
  		<accuracy>0.001</accuracy>
--- 207,405 ----
  			</_segments>
  		</itExcitation1>
! 		<mc class_id="25" tracking_level="0" version="0">
! 			<chargeBalance>0</chargeBalance>
! 			<stoichiometricBalance>1</stoichiometricBalance>
! 			<mechanism>A &lt;=&gt; B + e-; b&lt;0&gt;;
! 
! 
  </mechanism>
! 			<activeBoundaries>
! 				<count>1</count>
! 				<item>0</item>
! 			</activeBoundaries>
! 		</mc>
! 		<mpc class_id="27" tracking_level="0" version="0">
! 			<temp class_id="28" tracking_level="0" version="0">
! 				<ABQ class_id="29" tracking_level="0" version="0">
! 					<namestring>temperature</namestring>
! 					<symbolstring>T</symbolstring>
! 				</ABQ>
! 				<_value>293.14999999999998</_value>
! 			</temp>
! 			<area class_id="30" tracking_level="0" version="0">
! 				<ABQ class_id="31" tracking_level="0" version="0">
! 					<namestring>area</namestring>
! 					<symbolstring>A</symbolstring>
! 				</ABQ>
! 				<_value>6.0000000000000002e-06</_value>
! 			</area>
! 			<dissConcs class_id="32" tracking_level="0" version="0">
! 				<count>2</count>
! 				<item class_id="33" tracking_level="0" version="0">
! 					<first>0</first>
! 					<second class_id="34" tracking_level="0" version="0">
! 						<ABQ class_id="35" tracking_level="0" version="0">
! 							<namestring>concentration</namestring>
! 							<symbolstring>c</symbolstring>
! 						</ABQ>
! 						<_value>0.0001</_value>
! 					</second>
! 				</item>
! 				<item>
! 					<first>1</first>
! 					<second>
! 						<ABQ>
! 							<namestring>concentration</namestring>
! 							<symbolstring>c</symbolstring>
! 						</ABQ>
! 						<_value>0</_value>
! 					</second>
! 				</item>
! 			</dissConcs>
! 			<refDissConc>
! 				<ABQ>
! 					<namestring>concentration</namestring>
! 					<symbolstring>c</symbolstring>
! 				</ABQ>
! 				<_value>0.0001</_value>
! 			</refDissConc>
! 			<refConcIndex>0</refConcIndex>
! 			<adsConcs class_id="36" tracking_level="0" version="0">
! 				<count>0</count>
! 			</adsConcs>
! 			<saturationConcs class_id="37" tracking_level="0" version="0">
! 				<count>0</count>
! 			</saturationConcs>
! 			<diffCoeffs class_id="38" tracking_level="0" version="0">
! 				<count>2</count>
! 				<item class_id="39" tracking_level="0" version="0">
! 					<first>0</first>
! 					<second class_id="40" tracking_level="0" version="0">
! 						<ABQ class_id="41" tracking_level="0" version="0">
! 							<namestring>diffusioncoefficient</namestring>
! 							<symbolstring>D</symbolstring>
! 						</ABQ>
! 						<_value>1.0000000000000001e-09</_value>
! 					</second>
! 				</item>
! 				<item>
! 					<first>1</first>
! 					<second>
! 						<ABQ>
! 							<namestring>diffusioncoefficient</namestring>
! 							<symbolstring>D</symbolstring>
! 						</ABQ>
! 						<_value>1.0000000000000001e-09</_value>
! 					</second>
! 				</item>
! 			</diffCoeffs>
! 			<refDiffCoeff>
! 				<ABQ>
! 					<namestring>diffusioncoefficient</namestring>
! 					<symbolstring>D</symbolstring>
! 				</ABQ>
! 				<_value>1.0000000000000001e-09</_value>
! 			</refDiffCoeff>
! 			<maxDiffCoeff>1</maxDiffCoeff>
! 			<formalPotentials class_id="42" tracking_level="0" version="0">
! 				<count>1</count>
! 				<item class_id="43" tracking_level="0" version="0">
! 					<first>0</first>
! 					<second>
! 						<ABQ>
! 							<namestring>electric potential</namestring>
! 							<symbolstring>E</symbolstring>
! 						</ABQ>
! 						<_value>0.25</_value>
! 					</second>
! 				</item>
! 			</formalPotentials>
! 			<alphas class_id="44" tracking_level="0" version="0">
! 				<count>1</count>
! 				<item class_id="45" tracking_level="0" version="0">
! 					<first>0</first>
! 					<second>0.5</second>
! 				</item>
! 			</alphas>
! 			<khs class_id="46" tracking_level="0" version="0">
! 				<count>1</count>
! 				<item class_id="47" tracking_level="0" version="0">
! 					<first>0</first>
! 					<second class_id="48" tracking_level="0" version="0">
! 						<ABQ class_id="49" tracking_level="0" version="0">
! 							<namestring>heterogeneousrateconstant</namestring>
! 							<symbolstring>k_s</symbolstring>
! 						</ABQ>
! 						<_value>0.01</_value>
! 					</second>
! 				</item>
! 			</khs>
! 			<langEquilConstants class_id="50" tracking_level="0" version="0">
! 				<count>0</count>
! 			</langEquilConstants>
! 			<langAdsRateConstants class_id="51" tracking_level="0" version="0">
! 				<count>0</count>
! 			</langAdsRateConstants>
! 			<firstOrderRateConstants class_id="52" tracking_level="0" version="0">
! 				<count>0</count>
! 			</firstOrderRateConstants>
! 			<homEquilibriumConstants>
! 				<count>0</count>
! 			</homEquilibriumConstants>
! 			<homForwardRateConstants>
! 				<count>0</count>
! 			</homForwardRateConstants>
! 			<homBackwardRateConstants>
! 				<count>0</count>
! 			</homBackwardRateConstants>
! 			<homSurfEquilibriumConstants>
! 				<count>0</count>
! 			</homSurfEquilibriumConstants>
! 			<homSurfForwardRateConstants>
! 				<count>0</count>
! 			</homSurfForwardRateConstants>
! 			<homSurfBackwardRateConstants>
! 				<count>0</count>
! 			</homSurfBackwardRateConstants>
! 			<hetSurfEquilibriumConstants>
! 				<count>0</count>
! 			</hetSurfEquilibriumConstants>
! 			<hetSurfForwardRateConstants>
! 				<count>0</count>
! 			</hetSurfForwardRateConstants>
! 			<hetSurfBackwardRateConstants>
! 				<count>0</count>
! 			</hetSurfBackwardRateConstants>
! 			<fixed>
! 				<count>0</count>
! 			</fixed>
! 			<numRowsDissSpecies>2</numRowsDissSpecies>
! 			<numRowsAdsSpecies>0</numRowsAdsSpecies>
! 			<numRowsSaturation>0</numRowsSaturation>
! 			<numRowsBvDiss>1</numRowsBvDiss>
! 			<numRowsBvAds>0</numRowsBvAds>
! 			<numRowsLangmuir>0</numRowsLangmuir>
! 			<numRowsHomPower>0</numRowsHomPower>
! 			<numRowsHomGen>0</numRowsHomGen>
! 			<numColsHomGen>0</numColsHomGen>
! 			<numRowsHomSurfPower>0</numRowsHomSurfPower>
! 			<numRowsHomSurfGen>0</numRowsHomSurfGen>
! 			<numColsHomSurfGen>0</numColsHomSurfGen>
! 			<numRowsHetSurfPower>0</numRowsHetSurfPower>
! 			<numRowsHetSurfGen>0</numRowsHetSurfGen>
! 			<numColsHetSurfGen>0</numColsHetSurfGen>
! 			<genParams class_id="54" tracking_level="0" version="0">
! 				<count>0</count>
! 			</genParams>
! 			<genColsParams class_id="55" tracking_level="0" version="0">
! 				<count>0</count>
! 			</genColsParams>
! 			<genParamsCols class_id="56" tracking_level="0" version="0">
! 				<count>0</count>
! 			</genParamsCols>
! 			<genParamsValues class_id="57" tracking_level="0" version="0">
! 				<count>0</count>
! 			</genParamsValues>
! 		</mpc>
  		<maxTime>100</maxTime>
  		<accuracy>0.001</accuracy>
***************
*** 402,406 ****
  			<count>0</count>
  		</timeSteps>
! 		<profiles class_id="56" tracking_level="0" version="0">
  			<count>0</count>
  		</profiles>
--- 434,438 ----
  			<count>0</count>
  		</timeSteps>
! 		<profiles class_id="59" tracking_level="0" version="0">
  			<count>0</count>
  		</profiles>
***************
*** 410,416 ****
  		<hetSurfReactions>0</hetSurfReactions>
  		<plotDiss>0</plotDiss>
! 		<plotAds>1</plotAds>
! 		<sc class_id="57" tracking_level="1" version="0" object_id="_38">
! 			<rho>0.11111111111111108</rho>
  			<TOL>0.02</TOL>
  			<ATOLs>
--- 442,448 ----
  		<hetSurfReactions>0</hetSurfReactions>
  		<plotDiss>0</plotDiss>
! 		<plotAds>0</plotAds>
! 		<sc class_id="60" tracking_level="0" version="0">
! 			<rho>0.1111111111111111</rho>
  			<TOL>0.02</TOL>
  			<ATOLs>
***************
*** 462,468 ****
  		<visConcProfiles>0</visConcProfiles>
  	</cond_data>
! 	<meas_data class_id="59" class_name="MeasurementDataModSim" tracking_level="1" version="0" object_id="_39">
! 		<MeasurementData class_id="58" tracking_level="1" version="0" object_id="_40"></MeasurementData>
! 		<responseCurves class_id="60" tracking_level="0" version="0">
  			<count>0</count>
  		</responseCurves>
--- 494,500 ----
  		<visConcProfiles>0</visConcProfiles>
  	</cond_data>
! 	<meas_data class_id="62" class_name="experiment::MeasurementDataModSim" tracking_level="1" version="0" object_id="_10">
! 		<MeasurementData class_id="61" tracking_level="1" version="0" object_id="_11"></MeasurementData>
! 		<responseCurves class_id="63" tracking_level="0" version="0">
  			<count>0</count>
  		</responseCurves>

Index: example2.xml
===================================================================
RCS file: /cvsroot/echempp/examples/example2.xml,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** example2.xml	19 Dec 2007 13:58:29 -0000	1.2
--- example2.xml	27 Dec 2007 19:23:11 -0000	1.3
***************
*** 2,9 ****
  <!DOCTYPE boost_serialization>
  <boost_serialization signature="serialization::archive" version="3">
! <ep class_id="0" class_name="Induced_Simulated_Dynamic_doubleSecondTimeVariable_doubleVoltElectricPotentialVariable_doubleAmpereElectricCurrentVariable" tracking_level="1" version="0" object_id="_0">
  	<_AtomicBase class_id="1" tracking_level="0" version="0">
  		<Experiment class_id="2" tracking_level="0" version="0">
! 			<title_>Insert Experiment title</title_>
  		</Experiment>
  	</_AtomicBase>
--- 2,9 ----
  <!DOCTYPE boost_serialization>
[...1979 lines suppressed...]
! 			<item>0.99511296322920584</item>
! 			<item>1</item>
  		</timeSteps>
! 		<conversionFactor>6.1022667500274173e-07</conversionFactor>
  	</meas_data>
  </ep>
--- 521,533 ----
  		<visConcProfiles>0</visConcProfiles>
  	</cond_data>
! 	<meas_data class_id="61" class_name="experiment::MeasurementDataModSim" tracking_level="1" version="0" object_id="_9">
! 		<MeasurementData class_id="60" tracking_level="1" version="0" object_id="_10"></MeasurementData>
! 		<responseCurves class_id="62" tracking_level="0" version="0">
! 			<count>0</count>
  		</responseCurves>
  		<timeSteps>
! 			<count>0</count>
  		</timeSteps>
! 		<conversionFactor>0</conversionFactor>
  	</meas_data>
  </ep>

Index: example4.xml
===================================================================
RCS file: /cvsroot/echempp/examples/example4.xml,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** example4.xml	19 Dec 2007 13:58:29 -0000	1.2
--- example4.xml	27 Dec 2007 19:23:11 -0000	1.3
***************
*** 2,9 ****
  <!DOCTYPE boost_serialization>
  <boost_serialization signature="serialization::archive" version="3">
! <ep class_id="0" class_name="Induced_Simulated_Dynamic_doubleSecondTimeVariable_doubleVoltElectricPotentialVariable_doubleAmpereElectricCurrentVariable" tracking_level="1" version="0" object_id="_0">
  	<_AtomicBase class_id="1" tracking_level="0" version="0">
  		<Experiment class_id="2" tracking_level="0" version="0">
! 			<title_>Insert Experiment title</title_>
  		</Experiment>
  	</_AtomicBase>
--- 2,9 ----
  <!DOCTYPE boost_serialization>
  <boost_serialization signature="serialization::archive" version="3">
! <ep class_id="0" class_name="experiment::cv::SimInduced" tracking_level="1" version="0" object_id="_0">
  	<_AtomicBase class_id="1" tracking_level="0" version="0">
  		<Experiment class_id="2" tracking_level="0" version="0">
! 			<title_>/home/dome/echempp/examples/example4.xml</title_>
  		</Experiment>
  	</_AtomicBase>
***************
*** 18,35 ****
  		</ptime_date>
  	</induction_end>
! 	<cond_data class_id="6" class_name="ConditionDataModSim" tracking_level="1" version="0" object_id="_1">
  		<ConditionData class_id="5" tracking_level="1" version="0" object_id="_2"></ConditionData>
  		<safety>3</safety>
! 		<is_finite>0</is_finite>
  		<currentControlled>0</currentControlled>
  		<potentialControlled>1</potentialControlled>
! 		<finiteDistance class_id="7" tracking_level="1" version="0" object_id="_3">
  			<ABQ class_id="8" tracking_level="0" version="0">
  				<namestring>length</namestring>
  				<symbolstring>l</symbolstring>
  			</ABQ>
! 			<_value>5.0000000000000002e-05</_value>
  		</finiteDistance>
! 		<num_electrodes>2</num_electrodes>
  		<dimension>1</dimension>
  		<technique0>CV</technique0>
--- 18,35 ----
  		</ptime_date>
  	</induction_end>
! 	<cond_data class_id="6" class_name="experiment::ConditionDataModSim" tracking_level="1" version="0" object_id="_1">
  		<ConditionData class_id="5" tracking_level="1" version="0" object_id="_2"></ConditionData>
  		<safety>3</safety>
! 		<is_finite>1</is_finite>
  		<currentControlled>0</currentControlled>
  		<potentialControlled>1</potentialControlled>
! 		<finiteDistance class_id="7" tracking_level="0" version="0">
  			<ABQ class_id="8" tracking_level="0" version="0">
  				<namestring>length</namestring>
  				<symbolstring>l</symbolstring>
  			</ABQ>
! 			<_value>1.0000000000000001e-05</_value>
  		</finiteDistance>
! 		<num_electrodes>1</num_electrodes>
  		<dimension>1</dimension>
  		<technique0>CV</technique0>
***************
*** 37,45 ****
  		<boundary0>0</boundary0>
  		<boundary1>1</boundary1>
! 		<etExcitation0 class_id="9" tracking_level="1" version="0" object_id="_4">
  			<ExcitationFunction class_id="10" tracking_level="0" version="0"></ExcitationFunction>
  			<_Imax class_id="11" tracking_level="0" version="0">
  				<count>3</count>
! 				<item class_id="12" tracking_level="1" version="0" object_id="_5">
  					<ABQ class_id="13" tracking_level="0" version="0">
  						<namestring>time</namestring>
--- 37,45 ----
  		<boundary0>0</boundary0>
  		<boundary1>1</boundary1>
! 		<etExcitation0 class_id="9" tracking_level="1" version="0" object_id="_3">
  			<ExcitationFunction class_id="10" tracking_level="0" version="0"></ExcitationFunction>
  			<_Imax class_id="11" tracking_level="0" version="0">
  				<count>3</count>
! 				<item class_id="12" tracking_level="0" version="0">
  					<ABQ class_id="13" tracking_level="0" version="0">
  						<namestring>time</namestring>
***************
*** 48,52 ****
  					<_value>0</_value>
  				</item>
! 				<item object_id="_6">
  					<ABQ>
  						<namestring></namestring>
--- 48,52 ----
  					<_value>0</_value>
  				</item>
! 				<item>
  					<ABQ>
  						<namestring></namestring>
***************
*** 55,59 ****
  					<_value>0.5</_value>
  				</item>
! 				<item object_id="_7">
  					<ABQ>
  						<namestring></namestring>
--- 55,59 ----
  					<_value>0.5</_value>
  				</item>
! 				<item>
  					<ABQ>
  						<namestring></namestring>
***************
*** 65,72 ****
  			<_segments class_id="14" tracking_level="0" version="0">
  				<count>2</count>
! 				<item class_id="16" class_name="LinearSegment_doubleVoltElectricPotentialVariable_doubleSecondTimeVariable" tracking_level="1" version="0" object_id="_8">
! 					<Base class_id="15" tracking_level="1" version="0" object_id="_9">
! 						<Segment class_id="17" tracking_level="1" version="0" object_id="_10"></Segment>
! 						<_Imax object_id="_11">
  							<ABQ>
  								<namestring></namestring>
--- 65,72 ----
  			<_segments class_id="14" tracking_level="0" version="0">
  				<count>2</count>
! 				<item class_id="15" class_name="ExcitationFunctions::Segments::LinearEtSegment" tracking_level="1" version="0" object_id="_4">
! 					<Base class_id="16" tracking_level="0" version="0">
! 						<Segment class_id="17" tracking_level="0" version="0"></Segment>
! 						<_Imax>
  							<ABQ>
  								<namestring></namestring>
***************
*** 76,80 ****
  						</_Imax>
  					</Base>
! 					<_startingValue class_id="18" tracking_level="1" version="0" object_id="_12">
  						<ABQ class_id="19" tracking_level="0" version="0">
  							<namestring>electric potential</namestring>
--- 76,80 ----
  						</_Imax>
  					</Base>
! 					<_startingValue class_id="18" tracking_level="0" version="0">
  						<ABQ class_id="19" tracking_level="0" version="0">
  							<namestring>electric potential</namestring>
***************
*** 83,87 ****
  						<_value>0</_value>
  					</_startingValue>
! 					<_endValue object_id="_13">
  						<ABQ>
  							<namestring>electric potential</namestring>
--- 83,87 ----
  						<_value>0</_value>
  					</_startingValue>
! 					<_endValue>
  						<ABQ>
  							<namestring>electric potential</namestring>
***************
*** 90,94 ****
  						<_value>0.5</_value>
  					</_endValue>
! 					<_derivative class_id="20" tracking_level="1" version="0" object_id="_14">
  						<ABQ class_id="21" tracking_level="0" version="0">
  							<namestring></namestring>
--- 90,94 ----
  						<_value>0.5</_value>
  					</_endValue>
! 					<_derivative class_id="20" tracking_level="0" version="0">
  						<ABQ class_id="21" tracking_level="0" version="0">
  							<namestring></namestring>
***************
*** 98,105 ****
  					</_derivative>
  				</item>
! 				<item class_id_reference="16" object_id="_15">
! 					<Base object_id="_16">
! 						<Segment object_id="_17"></Segment>
! 						<_Imax object_id="_18">
  							<ABQ>
  								<namestring></namestring>
--- 98,105 ----
  					</_derivative>
  				</item>
! 				<item class_id_reference="15" object_id="_5">
! 					<Base>
! 						<Segment></Segment>
! 						<_Imax>
  							<ABQ>
  								<namestring></namestring>
***************
*** 109,113 ****
  						</_Imax>
  					</Base>
! 					<_startingValue object_id="_19">
  						<ABQ>
  							<namestring>electric potential</namestring>
--- 109,113 ----
  						</_Imax>
  					</Base>
! 					<_startingValue>
  						<ABQ>
  							<namestring>electric potential</namestring>
***************
*** 116,120 ****
  						<_value>0.5</_value>
  					</_startingValue>
! 					<_endValue object_id="_20">
  						<ABQ>
  							<namestring>electric potential</namestring>
--- 116,120 ----
  						<_value>0.5</_value>
  					</_startingValue>
! 					<_endValue>
  						<ABQ>
  							<namestring>electric potential</namestring>
***************
*** 123,127 ****
  						<_value>0</_value>
  					</_endValue>
! 					<_derivative object_id="_21">
  						<ABQ>
  							<namestring></namestring>
--- 123,127 ----
  						<_value>0</_value>
  					</_endValue>
! 					<_derivative>
  						<ABQ>
  							<namestring></namestring>
***************
*** 133,141 ****
  			</_segments>
  		</etExcitation0>
! 		<etExcitation1 object...
 
[truncated message content]