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From: <ku...@us...> - 2008-03-26 15:49:09
|
Revision: 727
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=727&view=rev
Author: kurzum
Date: 2008-03-26 08:49:00 -0700 (Wed, 26 Mar 2008)
Log Message:
-----------
added new example 1to16
Modified Paths:
--------------
trunk/examples/krk/krkopt.data
trunk/src/dl-learner/org/dllearner/examples/KRK.java
Added Paths:
-----------
trunk/examples/krk/krkopt0to16.data
trunk/examples/krk/test_ZERO_against_1to16.conf
Modified: trunk/examples/krk/krkopt.data
===================================================================
--- trunk/examples/krk/krkopt.data 2008-03-26 13:41:24 UTC (rev 726)
+++ trunk/examples/krk/krkopt.data 2008-03-26 15:49:00 UTC (rev 727)
@@ -103,3 +103,25158 @@
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[truncated message content] |
|
From: <sk...@us...> - 2008-03-26 13:41:27
|
Revision: 726
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=726&view=rev
Author: sknappe
Date: 2008-03-26 06:41:24 -0700 (Wed, 26 Mar 2008)
Log Message:
-----------
a sparql query is created, that gets all individuals to a given concept
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/core/owl/Description.java
trunk/src/dl-learner/org/dllearner/server/DLLearnerWS.java
Added Paths:
-----------
trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQueryDescriptionConvertVisitor.java
Modified: trunk/src/dl-learner/org/dllearner/core/owl/Description.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/owl/Description.java 2008-03-25 19:11:32 UTC (rev 725)
+++ trunk/src/dl-learner/org/dllearner/core/owl/Description.java 2008-03-26 13:41:24 UTC (rev 726)
@@ -33,6 +33,7 @@
protected Description parent = null;
protected List<Description> children = new LinkedList<Description>();
+ protected String sparqlVar = "subject";
public abstract int getArity();
@@ -200,4 +201,12 @@
public abstract String toManchesterSyntaxString(String baseURI, Map<String,String> prefixes);
public abstract void accept(DescriptionVisitor visitor);
+
+ public String getSparqlVar() {
+ return sparqlVar;
+ }
+
+ public void setSparqlVar(String sparqlVar) {
+ this.sparqlVar = sparqlVar;
+ }
}
Added: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQueryDescriptionConvertVisitor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQueryDescriptionConvertVisitor.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQueryDescriptionConvertVisitor.java 2008-03-26 13:41:24 UTC (rev 726)
@@ -0,0 +1,213 @@
+package org.dllearner.kb.sparql;
+
+
+import org.dllearner.algorithms.gp.ADC;
+import org.dllearner.core.owl.DatatypeExactCardinalityRestriction;
+import org.dllearner.core.owl.DatatypeMaxCardinalityRestriction;
+import org.dllearner.core.owl.DatatypeMinCardinalityRestriction;
+import org.dllearner.core.owl.DatatypeSomeRestriction;
+import org.dllearner.core.owl.DatatypeValueRestriction;
+import org.dllearner.core.owl.Description;
+import org.dllearner.core.owl.DescriptionVisitor;
+import org.dllearner.core.owl.Intersection;
+import org.dllearner.core.owl.NamedClass;
+import org.dllearner.core.owl.Negation;
+import org.dllearner.core.owl.Nothing;
+import org.dllearner.core.owl.ObjectAllRestriction;
+import org.dllearner.core.owl.ObjectExactCardinalityRestriction;
+import org.dllearner.core.owl.ObjectMaxCardinalityRestriction;
+import org.dllearner.core.owl.ObjectMinCardinalityRestriction;
+import org.dllearner.core.owl.ObjectSomeRestriction;
+import org.dllearner.core.owl.ObjectValueRestriction;
+import org.dllearner.core.owl.Thing;
+import org.dllearner.core.owl.Union;
+import org.dllearner.parser.KBParser;
+import org.dllearner.parser.ParseException;
+
+/**
+ * Converter from DL-Learner descriptions to a corresponding SPARQL query
+ * to get all instances that are described by this description.
+ * @author Sebastian Knappe
+ *
+ */
+public class SparqlQueryDescriptionConvertVisitor implements DescriptionVisitor{
+
+ private String query="";
+
+ private int currentObject=0;
+
+ public String getSparqlQuery()
+ {
+ query="SELECT ?subject\nWHERE {"+query;
+ query+="}\n";
+ query+="LIMIT 5";
+ return query;
+ }
+
+ public static String getSparqlQuery(Description description)
+ {
+ SparqlQueryDescriptionConvertVisitor visitor=new SparqlQueryDescriptionConvertVisitor();
+ description.accept(visitor);
+ return visitor.getSparqlQuery();
+ }
+
+ /**
+ * Used for testing the Sparql Query converter.
+ *
+ * @param args
+ */
+ public static void main(String[] args) {
+ try {
+ Description d = KBParser.parseConcept("EXISTS \"http://dbpedia.org/property/disambiguates\".TOP");
+ String query = SparqlQueryDescriptionConvertVisitor.getSparqlQuery(d);
+ System.out.println(d);
+ System.out.println(query);
+ } catch (ParseException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.Negation)
+ */
+ public void visit(Negation description) {
+ System.out.println("Negation");
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.ObjectAllRestriction)
+ */
+ public void visit(ObjectAllRestriction description) {
+ System.out.println("ObjectAllRestriction");
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.ObjectSomeRestriction)
+ */
+ public void visit(ObjectSomeRestriction description) {
+ System.out.println("ObjectSomeRestriction");
+ query+="?"+description.getSparqlVar()+" <"+description.getRole()+"> ?object"+currentObject+".";
+ description.getChild(0).setSparqlVar("object"+currentObject);
+ currentObject++;
+ description.getChild(0).accept(this);
+ System.out.println(description.getRole());
+ System.out.println(description.getChild(0));
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.Nothing)
+ */
+ public void visit(Nothing description) {
+ System.out.println("Nothing");
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.Thing)
+ */
+ public void visit(Thing description) {
+ System.out.println("Thing");
+
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.Intersection)
+ */
+ public void visit(Intersection description) {
+ System.out.println("Intersection");
+ description.getChild(0).accept(this);
+ query+=".";
+ description.getChild(1).accept(this);
+ query+=".";
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.Union)
+ */
+ public void visit(Union description) {
+ System.out.println("Union");
+ query+="{";
+ description.getChild(0).accept(this);
+ query+="} UNION {";
+ description.getChild(1).accept(this);
+ query+="}";
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.ObjectMinCardinalityRestriction)
+ */
+ public void visit(ObjectMinCardinalityRestriction description) {
+ System.out.println("ObjectMinCardinalityRestriction");
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.ObjectExactCardinalityRestriction)
+ */
+ public void visit(ObjectExactCardinalityRestriction description) {
+ System.out.println("ObjectExactCardinalityRestriction");
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.ObjectMaxCardinalityRestriction)
+ */
+ public void visit(ObjectMaxCardinalityRestriction description) {
+ System.out.println("ObjectMaxCardinalityRestriction");
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.ObjectValueRestriction)
+ */
+ public void visit(ObjectValueRestriction description) {
+ System.out.println("ObjectValueRestriction");
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.DatatypeValueRestriction)
+ */
+ public void visit(DatatypeValueRestriction description) {
+ System.out.println("DatatypeValueRestriction");
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.NamedClass)
+ */
+ public void visit(NamedClass description) {
+ System.out.println("NamedClass");
+ query+="?"+description.getSparqlVar()+" a <"+description.getName()+">";
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.algorithms.gp.ADC)
+ */
+ public void visit(ADC description) {
+ System.out.println("ADC");
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.DatatypeMinCardinalityRestriction)
+ */
+ public void visit(DatatypeMinCardinalityRestriction description) {
+ System.out.println("DatatypeMinCardinalityRestriction");
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.DatatypeExactCardinalityRestriction)
+ */
+ public void visit(DatatypeExactCardinalityRestriction description) {
+ System.out.println("DatatypeExactCardinalityRestriction");
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.DatatypeMaxCardinalityRestriction)
+ */
+ public void visit(DatatypeMaxCardinalityRestriction description) {
+ System.out.println("DatatypeMaxCardinalityRestriction");
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.owl.DescriptionVisitor#visit(org.dllearner.core.owl.DatatypeSomeRestriction)
+ */
+ public void visit(DatatypeSomeRestriction description) {
+ System.out.println("DatatypeSomeRestriction");
+ }
+}
Modified: trunk/src/dl-learner/org/dllearner/server/DLLearnerWS.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/server/DLLearnerWS.java 2008-03-25 19:11:32 UTC (rev 725)
+++ trunk/src/dl-learner/org/dllearner/server/DLLearnerWS.java 2008-03-26 13:41:24 UTC (rev 726)
@@ -56,6 +56,7 @@
import org.dllearner.kb.OWLFile;
import org.dllearner.kb.sparql.SparqlKnowledgeSource;
import org.dllearner.kb.sparql.SparqlQuery;
+import org.dllearner.kb.sparql.SparqlQueryDescriptionConvertVisitor;
import org.dllearner.kb.sparql.SparqlQueryException;
import org.dllearner.kb.sparql.SparqlQueryThreaded;
import org.dllearner.learningproblems.PosNegDefinitionLP;
@@ -590,6 +591,13 @@
}
@WebMethod
+ public String getSparqlForConcept(int id) throws ClientNotKnownException {
+ ClientState state = getState(id);
+ Description solution=state.getLearningAlgorithm().getBestSolution();
+ return SparqlQueryDescriptionConvertVisitor.getSparqlQuery(solution);
+ }
+
+ @WebMethod
public void debug(String deb)
{
System.out.println(deb);
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <ku...@us...> - 2008-03-25 19:09:25
|
Revision: 724
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=724&view=rev
Author: kurzum
Date: 2008-03-25 12:08:48 -0700 (Tue, 25 Mar 2008)
Log Message:
-----------
last commit failed, maybe
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/examples/KRK.java
Modified: trunk/src/dl-learner/org/dllearner/examples/KRK.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/examples/KRK.java 2008-03-25 19:05:07 UTC (rev 723)
+++ trunk/src/dl-learner/org/dllearner/examples/KRK.java 2008-03-25 19:08:48 UTC (rev 724)
@@ -471,7 +471,7 @@
collect1 = "";
collect2 = "";
}
-
+
collect1 = "";
collect1 = "";
for (String key : classToInd.keySet()) {
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <ku...@us...> - 2008-03-25 19:06:46
|
Revision: 723
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=723&view=rev
Author: kurzum
Date: 2008-03-25 12:05:07 -0700 (Tue, 25 Mar 2008)
Log Message:
-----------
krk source
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/examples/KRK.java
Modified: trunk/src/dl-learner/org/dllearner/examples/KRK.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/examples/KRK.java 2008-03-25 14:28:25 UTC (rev 722)
+++ trunk/src/dl-learner/org/dllearner/examples/KRK.java 2008-03-25 19:05:07 UTC (rev 723)
@@ -48,7 +48,7 @@
// FLAGS
//
static boolean useInverse = false;
- //dependent, love and marriage, horse and carriage
+ // dependent, love and marriage, horse and carriage
static boolean useTripleSubProps = useInverse && false;
static URI ontologyURI = URI.create("http://www.test.de/test");
@@ -471,6 +471,31 @@
collect1 = "";
collect2 = "";
}
+
+ collect1 = "";
+ collect1 = "";
+ for (String key : classToInd.keySet()) {
+
+ SortedSet<String> tmpset = classToInd.get(key);
+
+ if (key.equals("ZERO")) {
+ collect1 += "/**" + key + "**/\n";
+ for (String individuals : tmpset) {
+ collect1 += "+\"" + individuals + "\"\n";
+ }
+
+ continue;
+ } else {
+ collect2 += "/**" + key + "**/\n";
+ for (String individuals : tmpset) {
+ collect2 += "-\"" + individuals + "\"\n";
+ }
+ }
+
+ }
+ writeToFile("examples/krk/examples_for_ZERO_and_Rest.txt", collect1
+ + "\n\n" + collect2 + "\n");
+
}
protected static void writeOWLFile(String filename) {
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <ku...@us...> - 2008-03-25 14:28:40
|
Revision: 722
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=722&view=rev
Author: kurzum
Date: 2008-03-25 07:28:25 -0700 (Tue, 25 Mar 2008)
Log Message:
-----------
some small fixes and changes
Modified Paths:
--------------
trunk/bin/quickstart.bat
trunk/examples/krk/test_ZERO_ONE.owl
trunk/examples/krk/test_ZERO_ONE_fastInstance.conf
trunk/src/dl-learner/org/dllearner/examples/KRK.java
Added Paths:
-----------
trunk/examples/krk/test_ONE_ZERO_fastInstance.conf
Modified: trunk/bin/quickstart.bat
===================================================================
--- trunk/bin/quickstart.bat 2008-03-23 20:11:36 UTC (rev 721)
+++ trunk/bin/quickstart.bat 2008-03-25 14:28:25 UTC (rev 722)
@@ -1 +1 @@
-java -cp .;.\lib\dig1.1-xmlbeans.jar;.\lib\fact\FaCT++OWLAPI-v1.1.10+.jar;.\lib\jena\antlr-2.7.5.jar;.\lib\jena\arq.jar;.\lib\jena\commons-logging-1.1.jar;.\lib\jena\concurrent.jar;.\lib\jena\icu4j_3_4.jar;.\lib\jena\iri.jar;.\lib\jena\jena.jar;.\lib\jena\json.jar;.\lib\jena\xercesImpl.jar;.\lib\junit-4.4.jar;.\lib\log4j.jar;.\lib\owlapi\antlr-runtime-3.0.jar;.\lib\owlapi\commons-lang-2.2.jar;.\lib\owlapi\owlapi-api.jar;.\lib\owlapi\owlapi-apibinding.jar;.\lib\owlapi\owlapi-change.jar;.\lib\owlapi\owlapi-debugging.jar;.\lib\owlapi\owlapi-dig1_1.jar;.\lib\owlapi\owlapi-functionalparser.jar;.\lib\owlapi\owlapi-functionalrenderer.jar;.\lib\owlapi\owlapi-impl.jar;.\lib\owlapi\owlapi-krssparser.jar;.\lib\owlapi\owlapi-mansyntaxparser.jar;.\lib\owlapi\owlapi-mansyntaxrenderer.jar;.\lib\owlapi\owlapi-metrics.jar;.\lib\owlapi\owlapi-oboparser.jar;.\lib\owlapi\owlapi-owlxmlparser.jar;.\lib\owlapi\owlapi-owlxmlrenderer.jar;.\lib\owlapi\owlapi-rdfapi.jar;.\lib\owlapi\owlapi-rdfxmlparser.jar;.\lib\owlapi\owlapi-rdfxmlrenderer.jar;.\lib\owlapi\owlapi-util.jar;.\lib\pellet\aterm-java-1.6.jar;.\lib\pellet\pellet.jar;.\lib\pellet\relaxngDatatype.jar;.\lib\pellet\xsdlib.jar;.\lib\xbean.jar;.\lib\dllearner.jar org.dllearner.cli.QuickStart
\ No newline at end of file
+java -Xmx1024m -cp .;.\lib\dig1.1-xmlbeans.jar;.\lib\fact\FaCT++OWLAPI-v1.1.10+.jar;.\lib\jena\antlr-2.7.5.jar;.\lib\jena\arq.jar;.\lib\jena\commons-logging-1.1.jar;.\lib\jena\concurrent.jar;.\lib\jena\icu4j_3_4.jar;.\lib\jena\iri.jar;.\lib\jena\jena.jar;.\lib\jena\json.jar;.\lib\jena\xercesImpl.jar;.\lib\junit-4.4.jar;.\lib\log4j.jar;.\lib\owlapi\antlr-runtime-3.0.jar;.\lib\owlapi\commons-lang-2.2.jar;.\lib\owlapi\owlapi-api.jar;.\lib\owlapi\owlapi-apibinding.jar;.\lib\owlapi\owlapi-change.jar;.\lib\owlapi\owlapi-debugging.jar;.\lib\owlapi\owlapi-dig1_1.jar;.\lib\owlapi\owlapi-functionalparser.jar;.\lib\owlapi\owlapi-functionalrenderer.jar;.\lib\owlapi\owlapi-impl.jar;.\lib\owlapi\owlapi-krssparser.jar;.\lib\owlapi\owlapi-mansyntaxparser.jar;.\lib\owlapi\owlapi-mansyntaxrenderer.jar;.\lib\owlapi\owlapi-metrics.jar;.\lib\owlapi\owlapi-oboparser.jar;.\lib\owlapi\owlapi-owlxmlparser.jar;.\lib\owlapi\owlapi-owlxmlrenderer.jar;.\lib\owlapi\owlapi-rdfapi.jar;.\lib\owlapi\owlapi-rdfxmlparser.jar;.\lib\owlapi\owlapi-rdfxmlrenderer.jar;.\lib\owlapi\owlapi-util.jar;.\lib\pellet\aterm-java-1.6.jar;.\lib\pellet\pellet.jar;.\lib\pellet\relaxngDatatype.jar;.\lib\pellet\xsdlib.jar;.\lib\xbean.jar;.\lib\dllearner.jar org.dllearner.cli.QuickStart
\ No newline at end of file
Added: trunk/examples/krk/test_ONE_ZERO_fastInstance.conf
===================================================================
--- trunk/examples/krk/test_ONE_ZERO_fastInstance.conf (rev 0)
+++ trunk/examples/krk/test_ONE_ZERO_fastInstance.conf 2008-03-25 14:28:25 UTC (rev 722)
@@ -0,0 +1,148 @@
+/*
+DEBUG - --- loop 4290 started ---
+INFO - best node EXISTS "hasPiece".EXISTS "hasLowerRankThan".("WRook" AND ALL "fileDistanceLessThan1"."WKing") [acc:100% h:0,853 q:0p-0n (REASONER), he:8 c:0]
+INFO -
+solutions:
+INFO - EXISTS "http://www.test.de/test#hasPiece".EXISTS "http://www.test.de/test#hasLowerRankThan".("http://www.test.de/test#WRook" AND ALL "http://www.test.de/test#fileDistanceLessThan1"."http://www.test.de/test#WKing") (length 9, depth 5)
+DEBUG - size of candidate set: 27319
+DEBUG - properness tests (reasoner/short concept/too weak list): 0/3/228
+DEBUG - concept tests (reasoner/too weak list/overly general list/redundant concepts): 14694/228/14149/3233
+INFO - Algorithm terminated succesfully.
+number of retrievals: 16
+retrieval reasoning time: 0ms ( 0ms per retrieval)
+number of instance checks: 1381888 (0 multiple)
+instance check reasoning time: 12s 280ms ( 0ms per instance check)
+subsumption hierarchy queries: 211
+(complex) subsumption checks: 22 (0 multiple)
+subsumption reasoning time: 40ms ( 1ms per subsumption check)
+overall reasoning time: 12s 320ms (41,847% of overall runtime)
+overall algorithm runtime: 29s 442ms
+
+
+EXISTS "hasPiece".
+ EXISTS "hasLowerRankThan".
+ ("WRook" AND ALL "fileDistanceLessThan1"."WKing")
+
+[acc:100% h:0,853 q:0p-0n (REASONER), he:8 c:0]
+
+
+*/
+
+import("test_ZERO_ONE.owl");
+refexamples.ignoredConcepts={
+"http://www.test.de/test#ONE",
+"http://www.test.de/test#ZERO"};
+
+//problem = posOnlyDefinition;
+
+algorithm = refexamples;
+//algorithm = refinement;
+//refinement.heuristic=flexible;
+reasoner=fastInstanceChecker;
++"http://www.test.de/test#game100"
++"http://www.test.de/test#game101"
++"http://www.test.de/test#game102"
++"http://www.test.de/test#game103"
++"http://www.test.de/test#game104"
++"http://www.test.de/test#game105"
++"http://www.test.de/test#game28"
++"http://www.test.de/test#game29"
++"http://www.test.de/test#game30"
++"http://www.test.de/test#game31"
++"http://www.test.de/test#game32"
++"http://www.test.de/test#game33"
++"http://www.test.de/test#game34"
++"http://www.test.de/test#game35"
++"http://www.test.de/test#game36"
++"http://www.test.de/test#game37"
++"http://www.test.de/test#game38"
++"http://www.test.de/test#game39"
++"http://www.test.de/test#game40"
++"http://www.test.de/test#game41"
++"http://www.test.de/test#game42"
++"http://www.test.de/test#game43"
++"http://www.test.de/test#game44"
++"http://www.test.de/test#game45"
++"http://www.test.de/test#game46"
++"http://www.test.de/test#game47"
++"http://www.test.de/test#game48"
++"http://www.test.de/test#game49"
++"http://www.test.de/test#game50"
++"http://www.test.de/test#game51"
++"http://www.test.de/test#game52"
++"http://www.test.de/test#game53"
++"http://www.test.de/test#game54"
++"http://www.test.de/test#game55"
++"http://www.test.de/test#game56"
++"http://www.test.de/test#game57"
++"http://www.test.de/test#game58"
++"http://www.test.de/test#game59"
++"http://www.test.de/test#game60"
++"http://www.test.de/test#game61"
++"http://www.test.de/test#game62"
++"http://www.test.de/test#game63"
++"http://www.test.de/test#game64"
++"http://www.test.de/test#game65"
++"http://www.test.de/test#game66"
++"http://www.test.de/test#game67"
++"http://www.test.de/test#game68"
++"http://www.test.de/test#game69"
++"http://www.test.de/test#game70"
++"http://www.test.de/test#game71"
++"http://www.test.de/test#game72"
++"http://www.test.de/test#game73"
++"http://www.test.de/test#game74"
++"http://www.test.de/test#game75"
++"http://www.test.de/test#game76"
++"http://www.test.de/test#game77"
++"http://www.test.de/test#game78"
++"http://www.test.de/test#game79"
++"http://www.test.de/test#game80"
++"http://www.test.de/test#game81"
++"http://www.test.de/test#game82"
++"http://www.test.de/test#game83"
++"http://www.test.de/test#game84"
++"http://www.test.de/test#game85"
++"http://www.test.de/test#game86"
++"http://www.test.de/test#game87"
++"http://www.test.de/test#game88"
++"http://www.test.de/test#game89"
++"http://www.test.de/test#game90"
++"http://www.test.de/test#game91"
++"http://www.test.de/test#game92"
++"http://www.test.de/test#game93"
++"http://www.test.de/test#game94"
++"http://www.test.de/test#game95"
++"http://www.test.de/test#game96"
++"http://www.test.de/test#game97"
++"http://www.test.de/test#game98"
++"http://www.test.de/test#game99"
+
+
+-"http://www.test.de/test#game1"
+-"http://www.test.de/test#game10"
+-"http://www.test.de/test#game11"
+-"http://www.test.de/test#game12"
+-"http://www.test.de/test#game13"
+-"http://www.test.de/test#game14"
+-"http://www.test.de/test#game15"
+-"http://www.test.de/test#game16"
+-"http://www.test.de/test#game17"
+-"http://www.test.de/test#game18"
+-"http://www.test.de/test#game19"
+-"http://www.test.de/test#game2"
+-"http://www.test.de/test#game20"
+-"http://www.test.de/test#game21"
+-"http://www.test.de/test#game22"
+-"http://www.test.de/test#game23"
+-"http://www.test.de/test#game24"
+-"http://www.test.de/test#game25"
+-"http://www.test.de/test#game26"
+-"http://www.test.de/test#game27"
+-"http://www.test.de/test#game3"
+-"http://www.test.de/test#game4"
+-"http://www.test.de/test#game5"
+-"http://www.test.de/test#game6"
+-"http://www.test.de/test#game7"
+-"http://www.test.de/test#game8"
+-"http://www.test.de/test#game9"
\ No newline at end of file
Modified: trunk/examples/krk/test_ZERO_ONE.owl
===================================================================
--- trunk/examples/krk/test_ZERO_ONE.owl 2008-03-23 20:11:36 UTC (rev 721)
+++ trunk/examples/krk/test_ZERO_ONE.owl 2008-03-25 14:28:25 UTC (rev 722)
@@ -135,7 +135,9 @@
<!-- http://www.test.de/test#fileDistanceLessThan1 -->
<owl:ObjectProperty rdf:about="#fileDistanceLessThan1">
+ <rdfs:range rdf:resource="#Piece"/>
<rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan2"/>
+ <rdfs:domain rdf:resource="#Piece"/>
</owl:ObjectProperty>
@@ -144,6 +146,8 @@
<owl:ObjectProperty rdf:about="#fileDistanceLessThan2">
<rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan3"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
</owl:ObjectProperty>
@@ -152,6 +156,8 @@
<owl:ObjectProperty rdf:about="#fileDistanceLessThan3">
<rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan4"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
</owl:ObjectProperty>
@@ -159,7 +165,9 @@
<!-- http://www.test.de/test#fileDistanceLessThan4 -->
<owl:ObjectProperty rdf:about="#fileDistanceLessThan4">
+ <rdfs:range rdf:resource="#Piece"/>
<rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan5"/>
+ <rdfs:domain rdf:resource="#Piece"/>
</owl:ObjectProperty>
@@ -167,6 +175,8 @@
<!-- http://www.test.de/test#fileDistanceLessThan5 -->
<owl:ObjectProperty rdf:about="#fileDistanceLessThan5">
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
<rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan6"/>
</owl:ObjectProperty>
@@ -175,6 +185,8 @@
<!-- http://www.test.de/test#fileDistanceLessThan6 -->
<owl:ObjectProperty rdf:about="#fileDistanceLessThan6">
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
<rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan7"/>
</owl:ObjectProperty>
@@ -184,13 +196,18 @@
<owl:ObjectProperty rdf:about="#fileDistanceLessThan7">
<rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan8"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
</owl:ObjectProperty>
<!-- http://www.test.de/test#fileDistanceLessThan8 -->
- <owl:ObjectProperty rdf:about="#fileDistanceLessThan8"/>
+ <owl:ObjectProperty rdf:about="#fileDistanceLessThan8">
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
@@ -223,14 +240,6 @@
- <!-- http://www.test.de/test#hasPieceInv -->
-
- <owl:ObjectProperty rdf:about="#hasPieceInv">
- <owl:inverseOf rdf:resource="#hasPiece"/>
- </owl:ObjectProperty>
-
-
-
<!-- http://www.test.de/test#rankDistance0 -->
<owl:ObjectProperty rdf:about="#rankDistance0">
@@ -330,6 +339,8 @@
<!-- http://www.test.de/test#rankDistanceLessThan1 -->
<owl:ObjectProperty rdf:about="#rankDistanceLessThan1">
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
<rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan2"/>
</owl:ObjectProperty>
@@ -339,6 +350,8 @@
<owl:ObjectProperty rdf:about="#rankDistanceLessThan2">
<rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan3"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
</owl:ObjectProperty>
@@ -347,6 +360,8 @@
<owl:ObjectProperty rdf:about="#rankDistanceLessThan3">
<rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan4"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
</owl:ObjectProperty>
@@ -354,7 +369,9 @@
<!-- http://www.test.de/test#rankDistanceLessThan4 -->
<owl:ObjectProperty rdf:about="#rankDistanceLessThan4">
+ <rdfs:range rdf:resource="#Piece"/>
<rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan5"/>
+ <rdfs:domain rdf:resource="#Piece"/>
</owl:ObjectProperty>
@@ -363,6 +380,8 @@
<owl:ObjectProperty rdf:about="#rankDistanceLessThan5">
<rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan6"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
</owl:ObjectProperty>
@@ -371,6 +390,8 @@
<owl:ObjectProperty rdf:about="#rankDistanceLessThan6">
<rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan7"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
</owl:ObjectProperty>
@@ -378,14 +399,19 @@
<!-- http://www.test.de/test#rankDistanceLessThan7 -->
<owl:ObjectProperty rdf:about="#rankDistanceLessThan7">
+ <rdfs:domain rdf:resource="#Piece"/>
<rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan8"/>
+ <rdfs:range rdf:resource="#Piece"/>
</owl:ObjectProperty>
<!-- http://www.test.de/test#rankDistanceLessThan8 -->
- <owl:ObjectProperty rdf:about="#rankDistanceLessThan8"/>
+ <owl:ObjectProperty rdf:about="#rankDistanceLessThan8">
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
@@ -1915,8 +1941,8 @@
<ONE rdf:about="#game36">
<rdf:type rdf:resource="#Game"/>
<hasPiece rdf:resource="#wrook_b5_36"/>
+ <hasPiece rdf:resource="#bking_a1_36"/>
<hasPiece rdf:resource="#wking_c2_36"/>
- <hasPiece rdf:resource="#bking_a1_36"/>
</ONE>
@@ -2791,8 +2817,8 @@
<hasLowerRankThan rdf:resource="#wrook_h3_33"/>
<hasLowerRankThan rdf:resource="#bking_a2_33"/>
<fileDistance2 rdf:resource="#bking_a2_33"/>
+ <fileDistance5 rdf:resource="#wrook_h3_33"/>
<hasLowerFileThan rdf:resource="#wrook_h3_33"/>
- <fileDistance5 rdf:resource="#wrook_h3_33"/>
<rankDistance2 rdf:resource="#wrook_h3_33"/>
<rankDistance1 rdf:resource="#bking_a2_33"/>
</WKing>
@@ -2924,8 +2950,8 @@
<WKing rdf:about="#wking_c2_17">
<fileDistance2 rdf:resource="#wrook_a8_17"/>
<hasLowerRankThan rdf:resource="#wrook_a8_17"/>
+ <fileDistance2 rdf:resource="#bking_a2_17"/>
<rankDistance6 rdf:resource="#wrook_a8_17"/>
- <fileDistance2 rdf:resource="#bking_a2_17"/>
<rankDistance0 rdf:resource="#bking_a2_17"/>
</WKing>
@@ -3237,8 +3263,8 @@
<WKing rdf:about="#wking_c2_58">
<hasLowerFileThan rdf:resource="#wrook_e6_58"/>
+ <rankDistance1 rdf:resource="#bking_a1_58"/>
<fileDistance2 rdf:resource="#bking_a1_58"/>
- <rankDistance1 rdf:resource="#bking_a1_58"/>
<fileDistance2 rdf:resource="#wrook_e6_58"/>
<hasLowerRankThan rdf:resource="#wrook_e6_58"/>
<rankDistance4 rdf:resource="#wrook_e6_58"/>
@@ -3791,8 +3817,8 @@
<rankDistance2 rdf:resource="#bking_d1_93"/>
<fileDistance2 rdf:resource="#wrook_e8_93"/>
<fileDistance1 rdf:resource="#bking_d1_93"/>
+ <hasLowerFileThan rdf:resource="#wrook_e8_93"/>
<hasLowerRankThan rdf:resource="#wrook_e8_93"/>
- <hasLowerFileThan rdf:resource="#wrook_e8_93"/>
</WKing>
@@ -4231,8 +4257,8 @@
<!-- http://www.test.de/test#wrook_a8_16 -->
<WRook rdf:about="#wrook_a8_16">
+ <fileDistance0 rdf:resource="#bking_a1_16"/>
<rankDistance7 rdf:resource="#bking_a1_16"/>
- <fileDistance0 rdf:resource="#bking_a1_16"/>
<hasLowerFileThan rdf:resource="#wking_c2_16"/>
</WRook>
Modified: trunk/examples/krk/test_ZERO_ONE_fastInstance.conf
===================================================================
--- trunk/examples/krk/test_ZERO_ONE_fastInstance.conf 2008-03-23 20:11:36 UTC (rev 721)
+++ trunk/examples/krk/test_ZERO_ONE_fastInstance.conf 2008-03-25 14:28:25 UTC (rev 722)
@@ -31,6 +31,41 @@
[acc:100% h:0,47 q:0p-0n (REASONER), he:21 c:0]
+
+NACH Ver\xE4nderung:
+
+DEBUG - --- loop 122500 started ---
+INFO - best node ALL "hasPiece".(EXISTS "fileDistanceLessThan6".((NOT "WKing") AND ("WRook" OR EXISTS "fileDistanceLessThan2".TOP)) AND ALL "fileDistance1"."WRook") [acc:100% h:0,663 q:0p-0n (REASONER), he:15 c:0]
+INFO -
+solutions:
+INFO - ALL "http://www.test.de/test#hasPiece".(EXISTS "http://www.test.de/test#fileDistanceLessThan6".((NOT "http://www.test.de/test#WKing") AND ("http://www.test.de/test#WRook" OR EXISTS "http://www.test.de/test#fileDistanceLessThan2".TOP)) AND ALL "http://www.test.de/test#fileDistance1"."http://www.test.de/test#WRook") (length 16, depth 7)
+DEBUG - size of candidate set: 174499
+DEBUG - properness tests (reasoner/short concept/too weak list): 0/1468/6803
+DEBUG - concept tests (reasoner/too weak list/overly general list/redundant concepts): 358746/6803/14149/180000
+INFO - Algorithm terminated succesfully.
+number of retrievals: 22
+retrieval reasoning time: 0ms ( 0ms per retrieval)
+number of instance checks: 19728857 (0 multiple)
+instance check reasoning time: 252s 200ms ( 0ms per instance check)
+subsumption hierarchy queries: 75118
+(complex) subsumption checks: 22 (0 multiple)
+subsumption reasoning time: 29ms ( 1ms per subsumption check)
+overall reasoning time: 252s 230ms (42,747% of overall runtime)
+overall algorithm runtime: 590s 49ms
+
+
+ALL "hasPiece".
+ (EXISTS "fileDistanceLessThan6".
+ ( (NOT "WKing") AND
+ ("WRook" OR EXISTS "fileDistanceLessThan2".TOP)
+ )
+ AND ALL "fileDistance1"."WRook")
+
+
+[acc:100% h:0,663 q:0p-0n (REASONER), he:15 c:0]
+
+
+
*/
import("test_ZERO_ONE.owl");
Modified: trunk/src/dl-learner/org/dllearner/examples/KRK.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/examples/KRK.java 2008-03-23 20:11:36 UTC (rev 721)
+++ trunk/src/dl-learner/org/dllearner/examples/KRK.java 2008-03-25 14:28:25 UTC (rev 722)
@@ -45,6 +45,12 @@
// FILES are letters
// RANKS are numbers
+ // FLAGS
+ //
+ static boolean useInverse = false;
+ //dependent, love and marriage, horse and carriage
+ static boolean useTripleSubProps = useInverse && false;
+
static URI ontologyURI = URI.create("http://www.test.de/test");
// static SortedSet<String> fileSet = new TreeSet<String>();
// static SortedSet<String> rankSet = new TreeSet<String>();
@@ -64,11 +70,16 @@
static NamedClass Rank = getAtomicConcept("Rank");
static NamedClass Piece = getAtomicConcept("Piece");
- // static ObjectProperty hasRank = getRole("hasRank");
- // static ObjectProperty hasFile = getRole("hasFile");
static ObjectProperty hasPiece = getRole("hasPiece");
- static ObjectProperty hasPieceInv = getRole("hasPieceInv");
+ static ObjectProperty hasWKing = getRole("hasWKing");
+ static ObjectProperty hasWRook = getRole("hasWRook");
+ static ObjectProperty hasBKing = getRole("hasBKing");
+ static ObjectProperty hasPieceInv = getRole("hasGame");
+ static ObjectProperty hasWKingInv = getRole("hasWKingInv");
+ static ObjectProperty hasWRookInv = getRole("hasWRookInv");
+ static ObjectProperty hasBKingInv = getRole("hasBKingInv");
+
static ObjectProperty rankLessThan = getRole("hasLowerRankThan");
static ObjectProperty fileLessThan = getRole("hasLowerFileThan");
@@ -283,13 +294,38 @@
kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(hasPiece, Game));
kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(hasPiece, Piece));
- kb.addRBoxAxiom(new InverseObjectPropertyAxiom(hasPiece, hasPieceInv));
+ if (useTripleSubProps) {
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(hasWKing, Game));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(hasWKing, WKing));
+
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(hasWRook, Game));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(hasWRook, WRook));
+
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(hasBKing, Game));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(hasBKing, BKing));
+ }
+
+ if (useInverse) {
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(hasPieceInv, Piece));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(hasPieceInv, Game));
+
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(hasWKingInv, WKing));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(hasWKingInv, Game));
+
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(hasWRookInv, WRook));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(hasWRookInv, Game));
+
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(hasBKingInv, BKing));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(hasBKingInv, Game));
+ }
+
kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(rankLessThan, Piece));
kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(rankLessThan, Piece));
kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(fileLessThan, Piece));
kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(fileLessThan, Piece));
+
}
static void finishBackgroundForRoles() {
@@ -297,6 +333,25 @@
kb.addRBoxAxiom(new TransitiveObjectPropertyAxiom(rankLessThan));
kb.addRBoxAxiom(new TransitiveObjectPropertyAxiom(fileLessThan));
+ if (useInverse)
+ // INVERSE
+ {
+ kb.addRBoxAxiom(new InverseObjectPropertyAxiom(hasPiece,
+ hasPieceInv));
+ kb.addRBoxAxiom(new InverseObjectPropertyAxiom(hasWKing,
+ hasWKingInv));
+ kb.addRBoxAxiom(new InverseObjectPropertyAxiom(hasWRook,
+ hasWRookInv));
+ kb.addRBoxAxiom(new InverseObjectPropertyAxiom(hasBKing,
+ hasBKingInv));
+ }
+
+ if (useTripleSubProps) {
+ kb.addRBoxAxiom(new SubObjectPropertyAxiom(hasWKing, hasPiece));
+ kb.addRBoxAxiom(new SubObjectPropertyAxiom(hasWRook, hasPiece));
+ kb.addRBoxAxiom(new SubObjectPropertyAxiom(hasBKing, hasPiece));
+ }
+
for (String oneRole : symmetricRoleSet) {
kb.addRBoxAxiom(new SymmetricObjectPropertyAxiom(getRole(oneRole)));
kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(getRole(oneRole),
@@ -317,6 +372,16 @@
+ (i - 1)), getRole("rankDistanceLessThan" + i)));
kb.addRBoxAxiom(new SubObjectPropertyAxiom(getRole("fileDistance"
+ (i - 1)), getRole("fileDistanceLessThan" + i)));
+
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(
+ getRole("rankDistanceLessThan" + i), Piece));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(
+ getRole("rankDistanceLessThan" + i), Piece));
+
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(
+ getRole("fileDistanceLessThan" + i), Piece));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(
+ getRole("fileDistanceLessThan" + i), Piece));
}
// kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(rankLessThan, Piece));
@@ -340,42 +405,39 @@
*
* kb.addRBoxAxiom(new InverseObjectPropertyAxiom(hasRank,hasRankInv));
* kb.addRBoxAxiom(new InverseObjectPropertyAxiom(hasFile,hasFileInv));
- * kb.addRBoxAxiom(new InverseObjectPropertyAxiom(lessThan,lessThanInv));
- * // assigning lessthan to file Iterator<String> it = fileSet.iterator();
+ * kb.addRBoxAxiom(new InverseObjectPropertyAxiom(lessThan,lessThanInv)); //
+ * assigning lessthan to file Iterator<String> it = fileSet.iterator();
* Individual current = getIndividual(it.next()); Individual next; while
* (it.hasNext()) { next = getIndividual(it.next()); kb .addABoxAxiom(new
- * ObjectPropertyAssertion(lessThan, current, next)); current = next;
- * } // assigning lessthan to rank it = rankSet.iterator(); current =
+ * ObjectPropertyAssertion(lessThan, current, next)); current = next; } //
+ * assigning lessthan to rank it = rankSet.iterator(); current =
* getIndividual(it.next()); next = null; while (it.hasNext()) { next =
* getIndividual(it.next()); kb .addABoxAxiom(new
- * ObjectPropertyAssertion(lessThan, current, next)); current = next;
- * }
- * // new PropertyRangeAxiom(rank, (PropertyRange) nc[5]);
+ * ObjectPropertyAssertion(lessThan, current, next)); current = next; } //
+ * new PropertyRangeAxiom(rank, (PropertyRange) nc[5]);
*
* String str = "hasDistanceOf"; String str2 = "hasDistanceLessThan"; //
* ObjectProperty tmp; String[] rankarray = new String[8]; String[]
* filearray = new String[8]; rankSet.toArray(rankarray);
- * fileSet.toArray(filearray);
- * // assigning has DistanceOf to Rank and File for (int count = 0; count <
- * filearray.length; count++) { for (int inner = count + 1, dist = 1; inner <
- * filearray.length; inner++, dist++) { // ObjectProperty op =
- * getRole(str+inner); kb.addABoxAxiom(getRoleAssertion(str + dist,
- * rankarray[count], rankarray[inner]));
- * kb.addABoxAxiom(getRoleAssertion(str + dist, filearray[count],
- * filearray[inner]));
- * } kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(getRole(str+(count+1)),
- * new Union(Rank,File))); kb.addRBoxAxiom(new
- * ObjectPropertyRangeAxiom(getRole(str+(count+1)), new Union(Rank,File)));
- * kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(getRole(str2+(count+1)),
- * new Union(Rank,File))); kb.addRBoxAxiom(new
+ * fileSet.toArray(filearray); // assigning has DistanceOf to Rank and File
+ * for (int count = 0; count < filearray.length; count++) { for (int inner =
+ * count + 1, dist = 1; inner < filearray.length; inner++, dist++) { //
+ * ObjectProperty op = getRole(str+inner);
+ * kb.addABoxAxiom(getRoleAssertion(str + dist, rankarray[count],
+ * rankarray[inner])); kb.addABoxAxiom(getRoleAssertion(str + dist,
+ * filearray[count], filearray[inner])); } kb.addRBoxAxiom(new
+ * ObjectPropertyDomainAxiom(getRole(str+(count+1)), new Union(Rank,File)));
+ * kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(getRole(str+(count+1)), new
+ * Union(Rank,File))); kb.addRBoxAxiom(new
+ * ObjectPropertyDomainAxiom(getRole(str2+(count+1)), new
+ * Union(Rank,File))); kb.addRBoxAxiom(new
* ObjectPropertyRangeAxiom(getRole(str2+(count+1)), new Union(Rank,File))); } //
* make it symmetric + subproperty of for (int count = 1; count < 8;
* count++) { kb.addRBoxAxiom(new SymmetricObjectPropertyAxiom(getRole(str +
* count))); kb.addRBoxAxiom(new SubObjectPropertyAxiom(getRole(str +
* count), getRole(str2 + (count + 1)))); kb.addRBoxAxiom(new
* SubObjectPropertyAxiom(getRole(str2 + count), getRole(str2 + (count +
- * 1)))); }
- * }
+ * 1)))); } }
*/
public static String[] tokenize(String s) {
StringTokenizer st = new StringTokenizer(s, ",");
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <ton...@us...> - 2008-03-23 20:11:39
|
Revision: 721
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=721&view=rev
Author: tonytacker
Date: 2008-03-23 13:11:36 -0700 (Sun, 23 Mar 2008)
Log Message:
-----------
some changes for tree
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/gui/RunPanel.java
trunk/src/dl-learner/org/dllearner/gui/StartGUI.java
trunk/src/dl-learner/org/dllearner/gui/ThreadStatistics.java
trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java
Modified: trunk/src/dl-learner/org/dllearner/gui/RunPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/RunPanel.java 2008-03-20 20:16:04 UTC (rev 720)
+++ trunk/src/dl-learner/org/dllearner/gui/RunPanel.java 2008-03-23 20:11:36 UTC (rev 721)
@@ -266,7 +266,7 @@
*
* @param a
* @param b
- * @return
+ * @return string that shows percent
*/
public String Percent(Long a, Long b) {
if (a != null && b != null) {
Modified: trunk/src/dl-learner/org/dllearner/gui/StartGUI.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/StartGUI.java 2008-03-20 20:16:04 UTC (rev 720)
+++ trunk/src/dl-learner/org/dllearner/gui/StartGUI.java 2008-03-23 20:11:36 UTC (rev 721)
@@ -70,8 +70,9 @@
this.setSize(800, 600);
// set icon
- setIconImage(java.awt.Toolkit.getDefaultToolkit().getImage(
- this.getClass().getResource("icon.gif")));
+ if (this.getClass().getResource("icon.gif") != null)
+ setIconImage(java.awt.Toolkit.getDefaultToolkit().getImage(
+ this.getClass().getResource("icon.gif")));
tab0 = new KnowledgeSourcePanel(config, this);
tab1 = new ReasonerPanel(config, this);
Modified: trunk/src/dl-learner/org/dllearner/gui/ThreadStatistics.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/ThreadStatistics.java 2008-03-20 20:16:04 UTC (rev 720)
+++ trunk/src/dl-learner/org/dllearner/gui/ThreadStatistics.java 2008-03-23 20:11:36 UTC (rev 721)
@@ -40,7 +40,7 @@
*/
@Override
public void run() {
- this.setPriority(4);
+ //this.setPriority(4);
if (config.getThreadIsRunning()) {
try {
sleep(1000); // sleep 1 second
Modified: trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java 2008-03-20 20:16:04 UTC (rev 720)
+++ trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java 2008-03-23 20:11:36 UTC (rev 721)
@@ -21,37 +21,56 @@
*/
import javax.swing.*;
+import javax.swing.event.TreeExpansionEvent;
+import javax.swing.event.TreeExpansionListener;
import org.dllearner.algorithms.refexamples.*;
+
/**
* TreeWindow
*
* @author Tilo Hielscher
*/
-public class TreeWindow extends JFrame {
+public class TreeWindow extends JFrame implements TreeExpansionListener {
private static final long serialVersionUID = -5807192061389763835L;
@SuppressWarnings("unused")
private Config config;
-
+ private EBNodeTreeModel ebNodeModel;
+ private ExampleBasedNode rootNode;
+
public TreeWindow(Config config) {
this.config = config;
this.setTitle("DL-Learner Tree");
this.setDefaultCloseOperation(JFrame.HIDE_ON_CLOSE);
this.setLocationByPlatform(true);
- this.setSize(300, 400);
+ this.setSize(640, 300);
// set icon
- setIconImage(java.awt.Toolkit.getDefaultToolkit().getImage(
- this.getClass().getResource("icon.gif")));
+ if (this.getClass().getResource("icon.gif") != null)
+ setIconImage(java.awt.Toolkit.getDefaultToolkit().getImage(
+ this.getClass().getResource("icon.gif")));
// tree model
if (config.getLearningAlgorithm() instanceof ExampleBasedROLComponent) {
ExampleBasedROLComponent ebrol = (ExampleBasedROLComponent) config
.getLearningAlgorithm();
- ExampleBasedNode rootNode = ebrol.getStartNode();
- JTree tree = new JTree(new EBNodeTreeModel(rootNode));
+ this.rootNode = ebrol.getStartNode();
+
+ System.out.println("childs1: " + rootNode.getChildren());
+
+ this.ebNodeModel = new EBNodeTreeModel(rootNode);
+
+ // childrens to treeModel
+ Object first = ebNodeModel.getChild(rootNode, 0);
+ System.out.println("getIndexOfChild: " + ebNodeModel.getIndexOfChild(rootNode, first));
+
+ //System.out.println("childs2: " + ebNodeModel.getChildren((ExampleBasedNode) first));
+
+
+ JTree tree = new JTree(ebNodeModel);
+ tree.addTreeExpansionListener(this);
this.add(new JScrollPane(tree));
}
@@ -60,4 +79,30 @@
this.setVisible(true);
}
+ /* (non-Javadoc)
+ * @see javax.swing.event.TreeExpansionListener#treeCollapsed(javax.swing.event.TreeExpansionEvent)
+ */
+ @Override
+ public void treeCollapsed(TreeExpansionEvent event) {
+ System.out.println("collapsed");
+ }
+
+ /* (non-Javadoc)
+ * @see javax.swing.event.TreeExpansionListener#treeExpanded(javax.swing.event.TreeExpansionEvent)
+ */
+ @Override
+ public void treeExpanded(TreeExpansionEvent event) {
+ System.out.println("expanded: " + event.getPath());
+ //Object path = event.getPath();
+
+ //System.out.println("childcount: " + ebNodeModel.getChildCount(path));
+
+
+ //ebNodeModel.getChild(event.getSource(), 0);
+ System.out.println("getIndexOfChild: " + ebNodeModel.getIndexOfChild(rootNode, event.getPath()));
+
+
+ ebNodeModel.getChild(rootNode, 9);
+ }
+
}
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <ku...@us...> - 2008-03-20 20:16:07
|
Revision: 720
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=720&view=rev
Author: kurzum
Date: 2008-03-20 13:16:04 -0700 (Thu, 20 Mar 2008)
Log Message:
-----------
working refexamples with fastInstanceChecker
Modified Paths:
--------------
trunk/examples/krk/krkopt.data
trunk/src/dl-learner/org/dllearner/examples/KRK.java
Added Paths:
-----------
trunk/examples/krk/examples_for_ONE.txt
trunk/examples/krk/examples_for_ZERO.txt
trunk/examples/krk/test_ZERO_ONE.owl
trunk/examples/krk/test_ZERO_ONE_fastInstance.conf
trunk/examples/krk/test_ZERO_ONE_refinement.conf
Property Changed:
----------------
trunk/examples/krk/
Property changes on: trunk/examples/krk
___________________________________________________________________
Name: svn:ignore
+ generic.conf
Added: trunk/examples/krk/examples_for_ONE.txt
===================================================================
--- trunk/examples/krk/examples_for_ONE.txt (rev 0)
+++ trunk/examples/krk/examples_for_ONE.txt 2008-03-20 20:16:04 UTC (rev 720)
@@ -0,0 +1,159 @@
++"http://www.test.de/test#game100"
++"http://www.test.de/test#game101"
++"http://www.test.de/test#game102"
++"http://www.test.de/test#game103"
++"http://www.test.de/test#game104"
++"http://www.test.de/test#game105"
++"http://www.test.de/test#game28"
++"http://www.test.de/test#game29"
++"http://www.test.de/test#game30"
++"http://www.test.de/test#game31"
++"http://www.test.de/test#game32"
++"http://www.test.de/test#game33"
++"http://www.test.de/test#game34"
++"http://www.test.de/test#game35"
++"http://www.test.de/test#game36"
++"http://www.test.de/test#game37"
++"http://www.test.de/test#game38"
++"http://www.test.de/test#game39"
++"http://www.test.de/test#game40"
++"http://www.test.de/test#game41"
++"http://www.test.de/test#game42"
++"http://www.test.de/test#game43"
++"http://www.test.de/test#game44"
++"http://www.test.de/test#game45"
++"http://www.test.de/test#game46"
++"http://www.test.de/test#game47"
++"http://www.test.de/test#game48"
++"http://www.test.de/test#game49"
++"http://www.test.de/test#game50"
++"http://www.test.de/test#game51"
++"http://www.test.de/test#game52"
++"http://www.test.de/test#game53"
++"http://www.test.de/test#game54"
++"http://www.test.de/test#game55"
++"http://www.test.de/test#game56"
++"http://www.test.de/test#game57"
++"http://www.test.de/test#game58"
++"http://www.test.de/test#game59"
++"http://www.test.de/test#game60"
++"http://www.test.de/test#game61"
++"http://www.test.de/test#game62"
++"http://www.test.de/test#game63"
++"http://www.test.de/test#game64"
++"http://www.test.de/test#game65"
++"http://www.test.de/test#game66"
++"http://www.test.de/test#game67"
++"http://www.test.de/test#game68"
++"http://www.test.de/test#game69"
++"http://www.test.de/test#game70"
++"http://www.test.de/test#game71"
++"http://www.test.de/test#game72"
++"http://www.test.de/test#game73"
++"http://www.test.de/test#game74"
++"http://www.test.de/test#game75"
++"http://www.test.de/test#game76"
++"http://www.test.de/test#game77"
++"http://www.test.de/test#game78"
++"http://www.test.de/test#game79"
++"http://www.test.de/test#game80"
++"http://www.test.de/test#game81"
++"http://www.test.de/test#game82"
++"http://www.test.de/test#game83"
++"http://www.test.de/test#game84"
++"http://www.test.de/test#game85"
++"http://www.test.de/test#game86"
++"http://www.test.de/test#game87"
++"http://www.test.de/test#game88"
++"http://www.test.de/test#game89"
++"http://www.test.de/test#game90"
++"http://www.test.de/test#game91"
++"http://www.test.de/test#game92"
++"http://www.test.de/test#game93"
++"http://www.test.de/test#game94"
++"http://www.test.de/test#game95"
++"http://www.test.de/test#game96"
++"http://www.test.de/test#game97"
++"http://www.test.de/test#game98"
++"http://www.test.de/test#game99"
+
+
+-"http://www.test.de/test#game100"
+-"http://www.test.de/test#game101"
+-"http://www.test.de/test#game102"
+-"http://www.test.de/test#game103"
+-"http://www.test.de/test#game104"
+-"http://www.test.de/test#game105"
+-"http://www.test.de/test#game28"
+-"http://www.test.de/test#game29"
+-"http://www.test.de/test#game30"
+-"http://www.test.de/test#game31"
+-"http://www.test.de/test#game32"
+-"http://www.test.de/test#game33"
+-"http://www.test.de/test#game34"
+-"http://www.test.de/test#game35"
+-"http://www.test.de/test#game36"
+-"http://www.test.de/test#game37"
+-"http://www.test.de/test#game38"
+-"http://www.test.de/test#game39"
+-"http://www.test.de/test#game40"
+-"http://www.test.de/test#game41"
+-"http://www.test.de/test#game42"
+-"http://www.test.de/test#game43"
+-"http://www.test.de/test#game44"
+-"http://www.test.de/test#game45"
+-"http://www.test.de/test#game46"
+-"http://www.test.de/test#game47"
+-"http://www.test.de/test#game48"
+-"http://www.test.de/test#game49"
+-"http://www.test.de/test#game50"
+-"http://www.test.de/test#game51"
+-"http://www.test.de/test#game52"
+-"http://www.test.de/test#game53"
+-"http://www.test.de/test#game54"
+-"http://www.test.de/test#game55"
+-"http://www.test.de/test#game56"
+-"http://www.test.de/test#game57"
+-"http://www.test.de/test#game58"
+-"http://www.test.de/test#game59"
+-"http://www.test.de/test#game60"
+-"http://www.test.de/test#game61"
+-"http://www.test.de/test#game62"
+-"http://www.test.de/test#game63"
+-"http://www.test.de/test#game64"
+-"http://www.test.de/test#game65"
+-"http://www.test.de/test#game66"
+-"http://www.test.de/test#game67"
+-"http://www.test.de/test#game68"
+-"http://www.test.de/test#game69"
+-"http://www.test.de/test#game70"
+-"http://www.test.de/test#game71"
+-"http://www.test.de/test#game72"
+-"http://www.test.de/test#game73"
+-"http://www.test.de/test#game74"
+-"http://www.test.de/test#game75"
+-"http://www.test.de/test#game76"
+-"http://www.test.de/test#game77"
+-"http://www.test.de/test#game78"
+-"http://www.test.de/test#game79"
+-"http://www.test.de/test#game80"
+-"http://www.test.de/test#game81"
+-"http://www.test.de/test#game82"
+-"http://www.test.de/test#game83"
+-"http://www.test.de/test#game84"
+-"http://www.test.de/test#game85"
+-"http://www.test.de/test#game86"
+-"http://www.test.de/test#game87"
+-"http://www.test.de/test#game88"
+-"http://www.test.de/test#game89"
+-"http://www.test.de/test#game90"
+-"http://www.test.de/test#game91"
+-"http://www.test.de/test#game92"
+-"http://www.test.de/test#game93"
+-"http://www.test.de/test#game94"
+-"http://www.test.de/test#game95"
+-"http://www.test.de/test#game96"
+-"http://www.test.de/test#game97"
+-"http://www.test.de/test#game98"
+-"http://www.test.de/test#game99"
+
Added: trunk/examples/krk/examples_for_ZERO.txt
===================================================================
--- trunk/examples/krk/examples_for_ZERO.txt (rev 0)
+++ trunk/examples/krk/examples_for_ZERO.txt 2008-03-20 20:16:04 UTC (rev 720)
@@ -0,0 +1,57 @@
++"http://www.test.de/test#game1"
++"http://www.test.de/test#game10"
++"http://www.test.de/test#game11"
++"http://www.test.de/test#game12"
++"http://www.test.de/test#game13"
++"http://www.test.de/test#game14"
++"http://www.test.de/test#game15"
++"http://www.test.de/test#game16"
++"http://www.test.de/test#game17"
++"http://www.test.de/test#game18"
++"http://www.test.de/test#game19"
++"http://www.test.de/test#game2"
++"http://www.test.de/test#game20"
++"http://www.test.de/test#game21"
++"http://www.test.de/test#game22"
++"http://www.test.de/test#game23"
++"http://www.test.de/test#game24"
++"http://www.test.de/test#game25"
++"http://www.test.de/test#game26"
++"http://www.test.de/test#game27"
++"http://www.test.de/test#game3"
++"http://www.test.de/test#game4"
++"http://www.test.de/test#game5"
++"http://www.test.de/test#game6"
++"http://www.test.de/test#game7"
++"http://www.test.de/test#game8"
++"http://www.test.de/test#game9"
+
+
+-"http://www.test.de/test#game1"
+-"http://www.test.de/test#game10"
+-"http://www.test.de/test#game11"
+-"http://www.test.de/test#game12"
+-"http://www.test.de/test#game13"
+-"http://www.test.de/test#game14"
+-"http://www.test.de/test#game15"
+-"http://www.test.de/test#game16"
+-"http://www.test.de/test#game17"
+-"http://www.test.de/test#game18"
+-"http://www.test.de/test#game19"
+-"http://www.test.de/test#game2"
+-"http://www.test.de/test#game20"
+-"http://www.test.de/test#game21"
+-"http://www.test.de/test#game22"
+-"http://www.test.de/test#game23"
+-"http://www.test.de/test#game24"
+-"http://www.test.de/test#game25"
+-"http://www.test.de/test#game26"
+-"http://www.test.de/test#game27"
+-"http://www.test.de/test#game3"
+-"http://www.test.de/test#game4"
+-"http://www.test.de/test#game5"
+-"http://www.test.de/test#game6"
+-"http://www.test.de/test#game7"
+-"http://www.test.de/test#game8"
+-"http://www.test.de/test#game9"
+
Modified: trunk/examples/krk/krkopt.data
===================================================================
--- trunk/examples/krk/krkopt.data 2008-03-20 19:54:20 UTC (rev 719)
+++ trunk/examples/krk/krkopt.data 2008-03-20 20:16:04 UTC (rev 720)
@@ -1,3 +1,27 @@
+c,1,a,3,a,1,zero
+c,1,a,4,a,1,zero
+c,1,a,5,a,1,zero
+c,1,a,6,a,1,zero
+c,1,a,7,a,1,zero
+c,1,a,8,a,1,zero
+c,2,a,3,a,1,zero
+c,2,a,4,a,1,zero
+c,2,a,4,a,2,zero
+c,2,a,5,a,1,zero
+c,2,a,5,a,2,zero
+c,2,a,6,a,1,zero
+c,2,a,6,a,2,zero
+c,2,a,7,a,1,zero
+c,2,a,7,a,2,zero
+c,2,a,8,a,1,zero
+c,2,a,8,a,2,zero
+c,3,a,1,c,1,zero
+c,3,e,1,c,1,zero
+c,3,f,1,c,1,zero
+c,3,g,1,c,1,zero
+c,3,h,1,c,1,zero
+d,3,a,1,d,1,zero
+d,3,b,1,d,1,zero
d,3,f,1,d,1,zero
d,3,g,1,d,1,zero
d,3,h,1,d,1,zero
@@ -3,3 +27,78 @@
c,1,c,3,a,2,one
c,1,d,3,a,2,one
-c,1,e,3,a,2,one
\ No newline at end of file
+c,1,e,3,a,2,one
+c,1,f,3,a,2,one
+c,1,g,3,a,2,one
+c,1,h,3,a,2,one
+c,2,b,3,a,2,one
+c,2,b,4,a,1,one
+c,2,b,5,a,1,one
+c,2,b,6,a,1,one
+c,2,b,7,a,1,one
+c,2,b,8,a,1,one
+c,2,c,3,a,2,one
+c,2,c,4,a,1,one
+c,2,c,4,a,3,one
+c,2,c,5,a,1,one
+c,2,c,6,a,1,one
+c,2,c,7,a,1,one
+c,2,c,8,a,1,one
+c,2,d,3,a,2,one
+c,2,d,4,a,1,one
+c,2,d,4,a,3,one
+c,2,d,5,a,1,one
+c,2,d,6,a,1,one
+c,2,d,7,a,1,one
+c,2,d,8,a,1,one
+c,2,e,3,a,2,one
+c,2,e,4,a,1,one
+c,2,e,4,a,3,one
+c,2,e,5,a,1,one
+c,2,e,6,a,1,one
+c,2,e,7,a,1,one
+c,2,e,8,a,1,one
+c,2,f,3,a,2,one
+c,2,f,4,a,1,one
+c,2,f,4,a,3,one
+c,2,f,5,a,1,one
+c,2,f,6,a,1,one
+c,2,f,7,a,1,one
+c,2,f,8,a,1,one
+c,2,g,3,a,2,one
+c,2,g,4,a,1,one
+c,2,g,4,a,3,one
+c,2,g,5,a,1,one
+c,2,g,6,a,1,one
+c,2,g,7,a,1,one
+c,2,g,8,a,1,one
+c,2,h,3,a,2,one
+c,2,h,4,a,1,one
+c,2,h,4,a,3,one
+c,2,h,5,a,1,one
+c,2,h,6,a,1,one
+c,2,h,7,a,1,one
+c,2,h,8,a,1,one
+c,3,a,3,b,1,one
+c,3,a,4,b,1,one
+c,3,a,5,b,1,one
+c,3,a,6,b,1,one
+c,3,a,7,b,1,one
+c,3,a,8,b,1,one
+c,3,e,3,d,1,one
+c,3,e,4,d,1,one
+c,3,e,5,d,1,one
+c,3,e,6,d,1,one
+c,3,e,7,d,1,one
+c,3,e,8,d,1,one
+d,3,b,3,c,1,one
+d,3,b,4,c,1,one
+d,3,b,5,c,1,one
+d,3,b,6,c,1,one
+d,3,b,7,c,1,one
+d,3,b,8,c,1,one
+d,3,f,3,e,1,one
+d,3,f,4,e,1,one
+d,3,f,5,e,1,one
+d,3,f,6,e,1,one
+d,3,f,7,e,1,one
+d,3,f,8,e,1,one
Added: trunk/examples/krk/test_ZERO_ONE.owl
===================================================================
--- trunk/examples/krk/test_ZERO_ONE.owl (rev 0)
+++ trunk/examples/krk/test_ZERO_ONE.owl 2008-03-20 20:16:04 UTC (rev 720)
@@ -0,0 +1,5017 @@
+<?xml version="1.0"?>
+
+
+<!DOCTYPE rdf:RDF [
+ <!ENTITY test "http://www.test.de/test#" >
+ <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
+ <!ENTITY owl11 "http://www.w3.org/2006/12/owl11#" >
+ <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
+ <!ENTITY owl11xml "http://www.w3.org/2006/12/owl11-xml#" >
+ <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
+ <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
+]>
+
+
+<rdf:RDF xmlns="http://www.test.de/test#"
+ xml:base="http://www.test.de/test"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:owl11="http://www.w3.org/2006/12/owl11#"
+ xmlns:owl11xml="http://www.w3.org/2006/12/owl11-xml#"
+ xmlns:test="http://www.test.de/test#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <owl:Ontology rdf:about=""/>
+
+
+
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Object Properties
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
+
+
+
+
+ <!-- http://www.test.de/test#fileDistance0 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistance0">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan1"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistance1 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistance1">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan2"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistance2 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistance2">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan3"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistance3 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistance3">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan4"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistance4 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistance4">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan5"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistance5 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistance5">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan6"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistance6 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistance6">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan7"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistance7 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistance7">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan8"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistanceLessThan0 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistanceLessThan0">
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan1"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistanceLessThan1 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistanceLessThan1">
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan2"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistanceLessThan2 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistanceLessThan2">
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan3"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistanceLessThan3 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistanceLessThan3">
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan4"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistanceLessThan4 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistanceLessThan4">
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan5"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistanceLessThan5 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistanceLessThan5">
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan6"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistanceLessThan6 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistanceLessThan6">
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan7"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistanceLessThan7 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistanceLessThan7">
+ <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan8"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#fileDistanceLessThan8 -->
+
+ <owl:ObjectProperty rdf:about="#fileDistanceLessThan8"/>
+
+
+
+ <!-- http://www.test.de/test#hasLowerFileThan -->
+
+ <owl:ObjectProperty rdf:about="#hasLowerFileThan">
+ <rdf:type rdf:resource="&owl;TransitiveProperty"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#hasLowerRankThan -->
+
+ <owl:ObjectProperty rdf:about="#hasLowerRankThan">
+ <rdf:type rdf:resource="&owl;TransitiveProperty"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#hasPiece -->
+
+ <owl:ObjectProperty rdf:about="#hasPiece">
+ <rdfs:domain rdf:resource="#Game"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#hasPieceInv -->
+
+ <owl:ObjectProperty rdf:about="#hasPieceInv">
+ <owl:inverseOf rdf:resource="#hasPiece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistance0 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistance0">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan1"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistance1 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistance1">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan2"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistance2 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistance2">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan3"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistance3 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistance3">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan4"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistance4 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistance4">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan5"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistance5 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistance5">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan6"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistance6 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistance6">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan7"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistance7 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistance7">
+ <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan8"/>
+ <rdfs:domain rdf:resource="#Piece"/>
+ <rdfs:range rdf:resource="#Piece"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistanceLessThan0 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistanceLessThan0">
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan1"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistanceLessThan1 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistanceLessThan1">
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan2"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistanceLessThan2 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistanceLessThan2">
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan3"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistanceLessThan3 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistanceLessThan3">
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan4"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistanceLessThan4 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistanceLessThan4">
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan5"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistanceLessThan5 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistanceLessThan5">
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan6"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistanceLessThan6 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistanceLessThan6">
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan7"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistanceLessThan7 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistanceLessThan7">
+ <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan8"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://www.test.de/test#rankDistanceLessThan8 -->
+
+ <owl:ObjectProperty rdf:about="#rankDistanceLessThan8"/>
+
+
+
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Classes
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
+
+
+
+
+ <!-- http://www.test.de/test#BKing -->
+
+ <owl:Class rdf:about="#BKing">
+ <rdfs:subClassOf rdf:resource="#Piece"/>
+ <owl:disjointWith rdf:resource="#WKing"/>
+ </owl:Class>
+
+
+
+ <!-- http://www.test.de/test#Game -->
+
+ <owl:Class rdf:about="#Game"/>
+
+
+
+ <!-- http://www.test.de/test#ONE -->
+
+ <owl:Class rdf:about="#ONE"/>
+
+
+
+ <!-- http://www.test.de/test#Piece -->
+
+ <owl:Class rdf:about="#Piece">
+ <owl:disjointWith rdf:resource="#Game"/>
+ </owl:Class>
+
+
+
+ <!-- http://www.test.de/test#WKing -->
+
+ <owl:Class rdf:about="#WKing">
+ <rdfs:subClassOf rdf:resource="#Piece"/>
+ </owl:Class>
+
+
+
+ <!-- http://www.test.de/test#WRook -->
+
+ <owl:Class rdf:about="#WRook">
+ <rdfs:subClassOf rdf:resource="#Piece"/>
+ <owl:disjointWith rdf:resource="#BKing"/>
+ <owl:disjointWith rdf:resource="#WKing"/>
+ </owl:Class>
+
+
+
+ <!-- http://www.test.de/test#ZERO -->
+
+ <owl:Class rdf:about="#ZERO"/>
+
+
+
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Individuals
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
+
+
+
+
+ <!-- http://www.test.de/test#bking_a1_1 -->
+
+ <BKing rdf:about="#bking_a1_1">
+ <hasLowerFileThan rdf:resource="#wking_c1_1"/>
+ <hasLowerRankThan rdf:resource="#wrook_a3_1"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_10 -->
+
+ <BKing rdf:about="#bking_a1_10">
+ <hasLowerRankThan rdf:resource="#wrook_a5_10"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_10"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_10"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_12 -->
+
+ <BKing rdf:about="#bking_a1_12">
+ <hasLowerRankThan rdf:resource="#wrook_a6_12"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_12"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_12"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_14 -->
+
+ <BKing rdf:about="#bking_a1_14">
+ <hasLowerRankThan rdf:resource="#wrook_a7_14"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_14"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_14"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_16 -->
+
+ <BKing rdf:about="#bking_a1_16">
+ <hasLowerRankThan rdf:resource="#wking_c2_16"/>
+ <hasLowerRankThan rdf:resource="#wrook_a8_16"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_16"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_2 -->
+
+ <BKing rdf:about="#bking_a1_2">
+ <hasLowerRankThan rdf:resource="#wrook_a4_2"/>
+ <hasLowerFileThan rdf:resource="#wking_c1_2"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_3 -->
+
+ <BKing rdf:about="#bking_a1_3">
+ <hasLowerRankThan rdf:resource="#wrook_a5_3"/>
+ <hasLowerFileThan rdf:resource="#wking_c1_3"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_35 -->
+
+ <BKing rdf:about="#bking_a1_35">
+ <hasLowerFileThan rdf:resource="#wking_c2_35"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_35"/>
+ <hasLowerFileThan rdf:resource="#wrook_b4_35"/>
+ <hasLowerRankThan rdf:resource="#wrook_b4_35"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_36 -->
+
+ <BKing rdf:about="#bking_a1_36">
+ <hasLowerFileThan rdf:resource="#wrook_b5_36"/>
+ <hasLowerRankThan rdf:resource="#wrook_b5_36"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_36"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_36"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_37 -->
+
+ <BKing rdf:about="#bking_a1_37">
+ <hasLowerFileThan rdf:resource="#wking_c2_37"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_37"/>
+ <hasLowerFileThan rdf:resource="#wrook_b6_37"/>
+ <hasLowerRankThan rdf:resource="#wrook_b6_37"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_38 -->
+
+ <BKing rdf:about="#bking_a1_38">
+ <hasLowerFileThan rdf:resource="#wrook_b7_38"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_38"/>
+ <hasLowerRankThan rdf:resource="#wrook_b7_38"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_38"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_39 -->
+
+ <BKing rdf:about="#bking_a1_39">
+ <hasLowerRankThan rdf:resource="#wrook_b8_39"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_39"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_39"/>
+ <hasLowerFileThan rdf:resource="#wrook_b8_39"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_4 -->
+
+ <BKing rdf:about="#bking_a1_4">
+ <hasLowerFileThan rdf:resource="#wking_c1_4"/>
+ <hasLowerRankThan rdf:resource="#wrook_a6_4"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_41 -->
+
+ <BKing rdf:about="#bking_a1_41">
+ <hasLowerRankThan rdf:resource="#wking_c2_41"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_41"/>
+ <hasLowerFileThan rdf:resource="#wrook_c4_41"/>
+ <hasLowerRankThan rdf:resource="#wrook_c4_41"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_43 -->
+
+ <BKing rdf:about="#bking_a1_43">
+ <hasLowerRankThan rdf:resource="#wking_c2_43"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_43"/>
+ <hasLowerFileThan rdf:resource="#wrook_c5_43"/>
+ <hasLowerRankThan rdf:resource="#wrook_c5_43"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_44 -->
+
+ <BKing rdf:about="#bking_a1_44">
+ <hasLowerFileThan rdf:resource="#wking_c2_44"/>
+ <hasLowerFileThan rdf:resource="#wrook_c6_44"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_44"/>
+ <hasLowerRankThan rdf:resource="#wrook_c6_44"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_45 -->
+
+ <BKing rdf:about="#bking_a1_45">
+ <hasLowerFileThan rdf:resource="#wking_c2_45"/>
+ <hasLowerRankThan rdf:resource="#wrook_c7_45"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_45"/>
+ <hasLowerFileThan rdf:resource="#wrook_c7_45"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_46 -->
+
+ <BKing rdf:about="#bking_a1_46">
+ <hasLowerRankThan rdf:resource="#wrook_c8_46"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_46"/>
+ <hasLowerFileThan rdf:resource="#wrook_c8_46"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_46"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_48 -->
+
+ <BKing rdf:about="#bking_a1_48">
+ <hasLowerFileThan rdf:resource="#wrook_d4_48"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_48"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_48"/>
+ <hasLowerRankThan rdf:resource="#wrook_d4_48"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_5 -->
+
+ <BKing rdf:about="#bking_a1_5">
+ <hasLowerRankThan rdf:resource="#wrook_a7_5"/>
+ <hasLowerFileThan rdf:resource="#wking_c1_5"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_50 -->
+
+ <BKing rdf:about="#bking_a1_50">
+ <hasLowerRankThan rdf:resource="#wking_c2_50"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_50"/>
+ <hasLowerRankThan rdf:resource="#wrook_d5_50"/>
+ <hasLowerFileThan rdf:resource="#wrook_d5_50"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_51 -->
+
+ <BKing rdf:about="#bking_a1_51">
+ <hasLowerRankThan rdf:resource="#wrook_d6_51"/>
+ <hasLowerFileThan rdf:resource="#wrook_d6_51"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_51"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_51"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_52 -->
+
+ <BKing rdf:about="#bking_a1_52">
+ <hasLowerFileThan rdf:resource="#wking_c2_52"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_52"/>
+ <hasLowerFileThan rdf:resource="#wrook_d7_52"/>
+ <hasLowerRankThan rdf:resource="#wrook_d7_52"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_53 -->
+
+ <BKing rdf:about="#bking_a1_53">
+ <hasLowerFileThan rdf:resource="#wrook_d8_53"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_53"/>
+ <hasLowerRankThan rdf:resource="#wrook_d8_53"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_53"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_55 -->
+
+ <BKing rdf:about="#bking_a1_55">
+ <hasLowerRankThan rdf:resource="#wking_c2_55"/>
+ <hasLowerFileThan rdf:resource="#wrook_e4_55"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_55"/>
+ <hasLowerRankThan rdf:resource="#wrook_e4_55"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_57 -->
+
+ <BKing rdf:about="#bking_a1_57">
+ <hasLowerRankThan rdf:resource="#wking_c2_57"/>
+ <hasLowerRankThan rdf:resource="#wrook_e5_57"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_57"/>
+ <hasLowerFileThan rdf:resource="#wrook_e5_57"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_58 -->
+
+ <BKing rdf:about="#bking_a1_58">
+ <hasLowerFileThan rdf:resource="#wking_c2_58"/>
+ <hasLowerRankThan rdf:resource="#wrook_e6_58"/>
+ <hasLowerFileThan rdf:resource="#wrook_e6_58"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_58"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_59 -->
+
+ <BKing rdf:about="#bking_a1_59">
+ <hasLowerRankThan rdf:resource="#wking_c2_59"/>
+ <hasLowerFileThan rdf:resource="#wrook_e7_59"/>
+ <hasLowerRankThan rdf:resource="#wrook_e7_59"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_59"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_6 -->
+
+ <BKing rdf:about="#bking_a1_6">
+ <hasLowerFileThan rdf:resource="#wking_c1_6"/>
+ <hasLowerRankThan rdf:resource="#wrook_a8_6"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_60 -->
+
+ <BKing rdf:about="#bking_a1_60">
+ <hasLowerRankThan rdf:resource="#wking_c2_60"/>
+ <hasLowerRankThan rdf:resource="#wrook_e8_60"/>
+ <hasLowerFileThan rdf:resource="#wrook_e8_60"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_60"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_62 -->
+
+ <BKing rdf:about="#bking_a1_62">
+ <hasLowerRankThan rdf:resource="#wking_c2_62"/>
+ <hasLowerRankThan rdf:resource="#wrook_f4_62"/>
+ <hasLowerFileThan rdf:resource="#wrook_f4_62"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_62"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_64 -->
+
+ <BKing rdf:about="#bking_a1_64">
+ <hasLowerRankThan rdf:resource="#wrook_f5_64"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_64"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_64"/>
+ <hasLowerFileThan rdf:resource="#wrook_f5_64"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_65 -->
+
+ <BKing rdf:about="#bking_a1_65">
+ <hasLowerFileThan rdf:resource="#wrook_f6_65"/>
+ <hasLowerRankThan rdf:resource="#wrook_f6_65"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_65"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_65"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_66 -->
+
+ <BKing rdf:about="#bking_a1_66">
+ <hasLowerRankThan rdf:resource="#wrook_f7_66"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_66"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_66"/>
+ <hasLowerFileThan rdf:resource="#wrook_f7_66"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_67 -->
+
+ <BKing rdf:about="#bking_a1_67">
+ <hasLowerRankThan rdf:resource="#wking_c2_67"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_67"/>
+ <hasLowerFileThan rdf:resource="#wrook_f8_67"/>
+ <hasLowerRankThan rdf:resource="#wrook_f8_67"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_69 -->
+
+ <BKing rdf:about="#bking_a1_69">
+ <hasLowerFileThan rdf:resource="#wrook_g4_69"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_69"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_69"/>
+ <hasLowerRankThan rdf:resource="#wrook_g4_69"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_7 -->
+
+ <BKing rdf:about="#bking_a1_7">
+ <hasLowerRankThan rdf:resource="#wrook_a3_7"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_7"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_7"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_71 -->
+
+ <BKing rdf:about="#bking_a1_71">
+ <hasLowerFileThan rdf:resource="#wking_c2_71"/>
+ <hasLowerRankThan rdf:resource="#wrook_g5_71"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_71"/>
+ <hasLowerFileThan rdf:resource="#wrook_g5_71"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_72 -->
+
+ <BKing rdf:about="#bking_a1_72">
+ <hasLowerRankThan rdf:resource="#wrook_g6_72"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_72"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_72"/>
+ <hasLowerFileThan rdf:resource="#wrook_g6_72"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_73 -->
+
+ <BKing rdf:about="#bking_a1_73">
+ <hasLowerRankThan rdf:resource="#wking_c2_73"/>
+ <hasLowerRankThan rdf:resource="#wrook_g7_73"/>
+ <hasLowerFileThan rdf:resource="#wrook_g7_73"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_73"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_74 -->
+
+ <BKing rdf:about="#bking_a1_74">
+ <hasLowerRankThan rdf:resource="#wrook_g8_74"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_74"/>
+ <hasLowerFileThan rdf:resource="#wrook_g8_74"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_74"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_76 -->
+
+ <BKing rdf:about="#bking_a1_76">
+ <hasLowerRankThan rdf:resource="#wrook_h4_76"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_76"/>
+ <hasLowerFileThan rdf:resource="#wrook_h4_76"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_76"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_78 -->
+
+ <BKing rdf:about="#bking_a1_78">
+ <hasLowerFileThan rdf:resource="#wrook_h5_78"/>
+ <hasLowerRankThan rdf:resource="#wrook_h5_78"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_78"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_78"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_79 -->
+
+ <BKing rdf:about="#bking_a1_79">
+ <hasLowerFileThan rdf:resource="#wking_c2_79"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_79"/>
+ <hasLowerRankThan rdf:resource="#wrook_h6_79"/>
+ <hasLowerFileThan rdf:resource="#wrook_h6_79"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_8 -->
+
+ <BKing rdf:about="#bking_a1_8">
+ <hasLowerFileThan rdf:resource="#wking_c2_8"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_8"/>
+ <hasLowerRankThan rdf:resource="#wrook_a4_8"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_80 -->
+
+ <BKing rdf:about="#bking_a1_80">
+ <hasLowerFileThan rdf:resource="#wrook_h7_80"/>
+ <hasLowerRankThan rdf:resource="#wking_c2_80"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_80"/>
+ <hasLowerRankThan rdf:resource="#wrook_h7_80"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a1_81 -->
+
+ <BKing rdf:about="#bking_a1_81">
+ <hasLowerRankThan rdf:resource="#wking_c2_81"/>
+ <hasLowerRankThan rdf:resource="#wrook_h8_81"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_81"/>
+ <hasLowerFileThan rdf:resource="#wrook_h8_81"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_11 -->
+
+ <BKing rdf:about="#bking_a2_11">
+ <hasLowerRankThan rdf:resource="#wrook_a5_11"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_11"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_13 -->
+
+ <BKing rdf:about="#bking_a2_13">
+ <hasLowerFileThan rdf:resource="#wking_c2_13"/>
+ <hasLowerRankThan rdf:resource="#wrook_a6_13"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_15 -->
+
+ <BKing rdf:about="#bking_a2_15">
+ <hasLowerRankThan rdf:resource="#wrook_a7_15"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_15"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_17 -->
+
+ <BKing rdf:about="#bking_a2_17">
+ <hasLowerRankThan rdf:resource="#wrook_a8_17"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_17"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_28 -->
+
+ <BKing rdf:about="#bking_a2_28">
+ <hasLowerFileThan rdf:resource="#wking_c1_28"/>
+ <hasLowerFileThan rdf:resource="#wrook_c3_28"/>
+ <hasLowerRankThan rdf:resource="#wrook_c3_28"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_29 -->
+
+ <BKing rdf:about="#bking_a2_29">
+ <hasLowerFileThan rdf:resource="#wking_c1_29"/>
+ <hasLowerRankThan rdf:resource="#wrook_d3_29"/>
+ <hasLowerFileThan rdf:resource="#wrook_d3_29"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_30 -->
+
+ <BKing rdf:about="#bking_a2_30">
+ <hasLowerRankThan rdf:resource="#wrook_e3_30"/>
+ <hasLowerFileThan rdf:resource="#wrook_e3_30"/>
+ <hasLowerFileThan rdf:resource="#wking_c1_30"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_31 -->
+
+ <BKing rdf:about="#bking_a2_31">
+ <hasLowerFileThan rdf:resource="#wking_c1_31"/>
+ <hasLowerRankThan rdf:resource="#wrook_f3_31"/>
+ <hasLowerFileThan rdf:resource="#wrook_f3_31"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_32 -->
+
+ <BKing rdf:about="#bking_a2_32">
+ <hasLowerRankThan rdf:resource="#wrook_g3_32"/>
+ <hasLowerFileThan rdf:resource="#wking_c1_32"/>
+ <hasLowerFileThan rdf:resource="#wrook_g3_32"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_33 -->
+
+ <BKing rdf:about="#bking_a2_33">
+ <hasLowerFileThan rdf:resource="#wrook_h3_33"/>
+ <hasLowerRankThan rdf:resource="#wrook_h3_33"/>
+ <hasLowerFileThan rdf:resource="#wking_c1_33"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_34 -->
+
+ <BKing rdf:about="#bking_a2_34">
+ <hasLowerFileThan rdf:resource="#wking_c2_34"/>
+ <hasLowerFileThan rdf:resource="#wrook_b3_34"/>
+ <hasLowerRankThan rdf:resource="#wrook_b3_34"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_40 -->
+
+ <BKing rdf:about="#bking_a2_40">
+ <hasLowerFileThan rdf:resource="#wking_c2_40"/>
+ <hasLowerRankThan rdf:resource="#wrook_c3_40"/>
+ <hasLowerFileThan rdf:resource="#wrook_c3_40"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_47 -->
+
+ <BKing rdf:about="#bking_a2_47">
+ <hasLowerRankThan rdf:resource="#wrook_d3_47"/>
+ <hasLowerFileThan rdf:resource="#wrook_d3_47"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_47"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_54 -->
+
+ <BKing rdf:about="#bking_a2_54">
+ <hasLowerFileThan rdf:resource="#wrook_e3_54"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_54"/>
+ <hasLowerRankThan rdf:resource="#wrook_e3_54"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_61 -->
+
+ <BKing rdf:about="#bking_a2_61">
+ <hasLowerRankThan rdf:resource="#wrook_f3_61"/>
+ <hasLowerFileThan rdf:resource="#wrook_f3_61"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_61"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_68 -->
+
+ <BKing rdf:about="#bking_a2_68">
+ <hasLowerFileThan rdf:resource="#wrook_g3_68"/>
+ <hasLowerRankThan rdf:resource="#wrook_g3_68"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_68"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_75 -->
+
+ <BKing rdf:about="#bking_a2_75">
+ <hasLowerRankThan rdf:resource="#wrook_h3_75"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_75"/>
+ <hasLowerFileThan rdf:resource="#wrook_h3_75"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a2_9 -->
+
+ <BKing rdf:about="#bking_a2_9">
+ <hasLowerFileThan rdf:resource="#wking_c2_9"/>
+ <hasLowerRankThan rdf:resource="#wrook_a4_9"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a3_42 -->
+
+ <BKing rdf:about="#bking_a3_42">
+ <hasLowerFileThan rdf:resource="#wking_c2_42"/>
+ <hasLowerRankThan rdf:resource="#wrook_c4_42"/>
+ <hasLowerFileThan rdf:resource="#wrook_c4_42"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a3_49 -->
+
+ <BKing rdf:about="#bking_a3_49">
+ <hasLowerFileThan rdf:resource="#wrook_d4_49"/>
+ <hasLowerRankThan rdf:resource="#wrook_d4_49"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_49"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a3_56 -->
+
+ <BKing rdf:about="#bking_a3_56">
+ <hasLowerRankThan rdf:resource="#wrook_e4_56"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_56"/>
+ <hasLowerFileThan rdf:resource="#wrook_e4_56"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a3_63 -->
+
+ <BKing rdf:about="#bking_a3_63">
+ <hasLowerFileThan rdf:resource="#wking_c2_63"/>
+ <hasLowerFileThan rdf:resource="#wrook_f4_63"/>
+ <hasLowerRankThan rdf:resource="#wrook_f4_63"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a3_70 -->
+
+ <BKing rdf:about="#bking_a3_70">
+ <hasLowerFileThan rdf:resource="#wrook_g4_70"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_70"/>
+ <hasLowerRankThan rdf:resource="#wrook_g4_70"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_a3_77 -->
+
+ <BKing rdf:about="#bking_a3_77">
+ <hasLowerRankThan rdf:resource="#wrook_h4_77"/>
+ <hasLowerFileThan rdf:resource="#wrook_h4_77"/>
+ <hasLowerFileThan rdf:resource="#wking_c2_77"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_b1_82 -->
+
+ <BKing rdf:about="#bking_b1_82">
+ <hasLowerRankThan rdf:resource="#wking_c3_82"/>
+ <hasLowerFileThan rdf:resource="#wking_c3_82"/>
+ <hasLowerRankThan rdf:resource="#wrook_a3_82"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_b1_83 -->
+
+ <BKing rdf:about="#bking_b1_83">
+ <hasLowerRankThan rdf:resource="#wking_c3_83"/>
+ <hasLowerRankThan rdf:resource="#wrook_a4_83"/>
+ <hasLowerFileThan rdf:resource="#wking_c3_83"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_b1_84 -->
+
+ <BKing rdf:about="#bking_b1_84">
+ <hasLowerRankThan rdf:resource="#wrook_a5_84"/>
+ <hasLowerRankThan rdf:resource="#wking_c3_84"/>
+ <hasLowerFileThan rdf:resource="#wking_c3_84"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_b1_85 -->
+
+ <BKing rdf:about="#bking_b1_85">
+ <hasLowerRankThan rdf:resource="#wking_c3_85"/>
+ <hasLowerFileThan rdf:resource="#wking_c3_85"/>
+ <hasLowerRankThan rdf:resource="#wrook_a6_85"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_b1_86 -->
+
+ <BKing rdf:about="#bking_b1_86">
+ <hasLowerRankThan rdf:resource="#wking_c3_86"/>
+ <hasLowerRankThan rdf:resource="#wrook_a7_86"/>
+ <hasLowerFileThan rdf:resource="#wking_c3_86"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_b1_87 -->
+
+ <BKing rdf:about="#bking_b1_87">
+ <hasLowerRankThan rdf:resource="#wking_c3_87"/>
+ <hasLowerRankThan rdf:resource="#wrook_a8_87"/>
+ <hasLowerFileThan rdf:resource="#wking_c3_87"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_c1_18 -->
+
+ <BKing rdf:about="#bking_c1_18">
+ <hasLowerRankThan rdf:resource="#wking_c3_18"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_c1_19 -->
+
+ <BKing rdf:about="#bking_c1_19">
+ <hasLowerFileThan rdf:resource="#wrook_e1_19"/>
+ <hasLowerRankThan rdf:resource="#wking_c3_19"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_c1_20 -->
+
+ <BKing rdf:about="#bking_c1_20">
+ <hasLowerRankThan rdf:resource="#wking_c3_20"/>
+ <hasLowerFileThan rdf:resource="#wrook_f1_20"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_c1_21 -->
+
+ <BKing rdf:about="#bking_c1_21">
+ <hasLowerFileThan rdf:resource="#wrook_g1_21"/>
+ <hasLowerRankThan rdf:resource="#wking_c3_21"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_c1_22 -->
+
+ <BKing rdf:about="#bking_c1_22">
+ <hasLowerFileThan rdf:resource="#wrook_h1_22"/>
+ <hasLowerRankThan rdf:resource="#wking_c3_22"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_c1_94 -->
+
+ <BKing rdf:about="#bking_c1_94">
+ <hasLowerFileThan rdf:resource="#wking_d3_94"/>
+ <hasLowerRankThan rdf:resource="#wking_d3_94"/>
+ <hasLowerRankThan rdf:resource="#wrook_b3_94"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_c1_95 -->
+
+ <BKing rdf:about="#bking_c1_95">
+ <hasLowerFileThan rdf:resource="#wking_d3_95"/>
+ <hasLowerRankThan rdf:resource="#wrook_b4_95"/>
+ <hasLowerRankThan rdf:resource="#wking_d3_95"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_c1_96 -->
+
+ <BKing rdf:about="#bking_c1_96">
+ <hasLowerRankThan rdf:resource="#wking_d3_96"/>
+ <hasLowerFileThan rdf:resource="#wking_d3_96"/>
+ <hasLowerRankThan rdf:resource="#wrook_b5_96"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_c1_97 -->
+
+ <BKing rdf:about="#bking_c1_97">
+ <hasLowerRankThan rdf:resource="#wrook_b6_97"/>
+ <hasLowerFileThan rdf:resource="#wking_d3_97"/>
+ <hasLowerRankThan rdf:resource="#wking_d3_97"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_c1_98 -->
+
+ <BKing rdf:about="#bking_c1_98">
+ <hasLowerRankThan rdf:resource="#wrook_b7_98"/>
+ <hasLowerFileThan rdf:resource="#wking_d3_98"/>
+ <hasLowerRankThan rdf:resource="#wking_d3_98"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_c1_99 -->
+
+ <BKing rdf:about="#bking_c1_99">
+ <hasLowerRankThan rdf:resource="#wrook_b8_99"/>
+ <hasLowerRankThan rdf:resource="#wking_d3_99"/>
+ <hasLowerFileThan rdf:resource="#wking_d3_99"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_d1_23 -->
+
+ <BKing rdf:about="#bking_d1_23">
+ <hasLowerRankThan rdf:resource="#wking_d3_23"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_d1_24 -->
+
+ <BKing rdf:about="#bking_d1_24">
+ <hasLowerRankThan rdf:resource="#wking_d3_24"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_d1_25 -->
+
+ <BKing rdf:about="#bking_d1_25">
+ <hasLowerFileThan rdf:resource="#wrook_f1_25"/>
+ <hasLowerRankThan rdf:resource="#wking_d3_25"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_d1_26 -->
+
+ <BKing rdf:about="#bking_d1_26">
+ <hasLowerFileThan rdf:resource="#wrook_g1_26"/>
+ <hasLowerRankThan rdf:resource="#wking_d3_26"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_d1_27 -->
+
+ <BKing rdf:about="#bking_d1_27">
+ <hasLowerFileThan rdf:resource="#wrook_h1_27"/>
+ <hasLowerRankThan rdf:resource="#wking_d3_27"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_d1_88 -->
+
+ <BKing rdf:about="#bking_d1_88">
+ <hasLowerRankThan rdf:resource="#wrook_e3_88"/>
+ <hasLowerRankThan rdf:resource="#wking_c3_88"/>
+ <hasLowerFileThan rdf:resource="#wrook_e3_88"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_d1_89 -->
+
+ <BKing rdf:about="#bking_d1_89">
+ <hasLowerRankThan rdf:resource="#wking_c3_89"/>
+ <hasLowerRankThan rdf:resource="#wrook_e4_89"/>
+ <hasLowerFileThan rdf:resource="#wrook_e4_89"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_d1_90 -->
+
+ <BKing rdf:about="#bking_d1_90">
+ <hasLowerFileThan rdf:resource="#wrook_e5_90"/>
+ <hasLowerRankThan rdf:resource="#wking_c3_90"/>
+ <hasLowerRankThan rdf:resource="#wrook_e5_90"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_d1_91 -->
+
+ <BKing rdf:about="#bking_d1_91">
+ <hasLowerRankThan rdf:resource="#wrook_e6_91"/>
+ <hasLowerRankThan rdf:resource="#wking_c3_91"/>
+ <hasLowerFileThan rdf:resource="#wrook_e6_91"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_d1_92 -->
+
+ <BKing rdf:about="#bking_d1_92">
+ <hasLowerRankThan rdf:resource="#wrook_e7_92"/>
+ <hasLowerRankThan rdf:resource="#wking_c3_92"/>
+ <hasLowerFileThan rdf:resource="#wrook_e7_92"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_d1_93 -->
+
+ <BKing rdf:about="#bking_d1_93">
+ <hasLowerRankThan rdf:resource="#wking_c3_93"/>
+ <hasLowerRankThan rdf:resource="#wrook_e8_93"/>
+ <hasLowerFileThan rdf:resource="#wrook_e8_93"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_e1_100 -->
+
+ <BKing rdf:about="#bking_e1_100">
+ <hasLowerRankThan rdf:resource="#wking_d3_100"/>
+ <hasLowerRankThan rdf:resource="#wrook_f3_100"/>
+ <hasLowerFileThan rdf:resource="#wrook_f3_100"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_e1_101 -->
+
+ <BKing rdf:about="#bking_e1_101">
+ <hasLowerRankThan rdf:resource="#wking_d3_101"/>
+ <hasLowerFileThan rdf:resource="#wrook_f4_101"/>
+ <hasLowerRankThan rdf:resource="#wrook_f4_101"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_e1_102 -->
+
+ <BKing rdf:about="#bking_e1_102">
+ <hasLowerFileThan rdf:resource="#wrook_f5_102"/>
+ <hasLowerRankThan rdf:resource="#wking_d3_102"/>
+ <hasLowerRankThan rdf:resource="#wrook_f5_102"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_e1_103 -->
+
+ <BKing rdf:about="#bking_e1_103">
+ <hasLowerRankThan rdf:resource="#wking_d3_103"/>
+ <hasLowerFileThan rdf:resource="#wrook_f6_103"/>
+ <hasLowerRankThan rdf:resource="#wrook_f6_103"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_e1_104 -->
+
+ <BKing rdf:about="#bking_e1_104">
+ <hasLowerRankThan rdf:resource="#wrook_f7_104"/>
+ <hasLowerFileThan rdf:resource="#wrook_f7_104"/>
+ <hasLowerRankThan rdf:resource="#wking_d3_104"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#bking_e1_105 -->
+
+ <BKing rdf:about="#bking_e1_105">
+ <hasLowerRankThan rdf:resource="#wking_d3_105"/>
+ <hasLowerRankThan rdf:resource="#wrook_f8_105"/>
+ <hasLowerFileThan rdf:resource="#wrook_f8_105"/>
+ </BKing>
+
+
+
+ <!-- http://www.test.de/test#game1 -->
+
+ <ZERO rdf:about="#game1">
+ <rdf:type rdf:resource="#Game"/>
+ <hasPiece rdf:resource="#wking_c1_1"/>
+ <hasPiece rdf:resource="#wrook_a3_1"/>
+ <hasPiece rdf:resource="#bking_a1_1"/>
+ </ZERO>
+
+
+
+ <!-- http://www.test.de/test#game10 -->
+
+ <ZERO rdf:about="#game10">
+ <rdf:type rdf:resource="#Game"/>
+ <hasPiece rdf:resource="#wrook_a5_10"/>
+ <hasPiece rdf:resource="#bking_a1_10"/>
+ <hasPiece rdf:resource="#wking_c2_10"/>
+ </ZERO>
+
+
+
+ <!-- http://www.test.de/test#game100 -->
+
+ <Game rdf:about="#game100">
+ <rdf:type rdf:resource="#ONE"/>
+ <hasPiece rdf:resource="#wking_d3_100"/>
+ <hasPiece rdf:resource="#wrook_f3_100"/>
+ <hasPiece rdf:resource="#bking_e1_100"/>
+ </Game>
+
+
+
+ <!-- http://www.test.de/test#game101 -->
+
+ <Game rdf:about="#game101">
+ <rdf:type rdf:resource="#ONE"/>
+ <hasPiece rdf:resource="#wrook_f4_101"/>
+ <hasPiece rdf:resource="#bking_e1_101"/>
+ <hasPiece rdf:resource="#wking_d3_101"/>
+ </Game>
+
+
+
+ <!-- http://www.test.de/test#game102 -->
+
+ <Game rdf:about="#game102">
+ <rdf:type rdf:resource="#ONE"/>
+ <hasPiece rdf:resource="#wking_d3_102"/>
+ <hasPiece rdf:resource="#bking_e1_102"/>
+ <hasPiece rdf:resource="#wrook_f5_102"/>
+ </Game>
+
+
+
+ <!-- http://www.test.de/test#game103 -->
+
+ <Game rdf:about="#game103">
+ <rdf:type rdf:resource="#ONE"/>
+ <hasPiece rdf:resource="#bking_e1_103"/>
+ <hasPiece rdf:resource="#wking_d3_103"/>
+ <hasPiece rdf:resource="#wrook_f6_103"/>
+ </Game>
+
+
+
+ <!-- http://www.test.de/test#game104 -->
+
+ <ONE rdf:about="#game104">
+ <rdf:type rdf:resource="#Game"/>
+ <hasPiece rdf:resource="#wrook_f7_104"/>
+ <hasPiece rdf:resource="#wking_d3_104"/>
+ <hasPiece rdf:resource="#bking_e1_104"/>
+ </ONE>
+
+
+
+ <!-- http://www.test.de/test#game105 -->
+
+ <Game rdf:about="#game105">
+ <rdf:type rdf:resource="#ONE"/>
+ <hasPiece rdf:resource="#wking_d3_105"/>
+ <hasPiece rdf:resource="#bking_e1_105"/>
+ <hasPiece rdf:resource="#wrook_f8_105"/>
+ </Game>
+
+
+
+ <!-- http://www.test.de/test#game11 -->
+
+ <ZERO rdf:about="#game11">
+ <rdf:type rdf:resource="#Game"/>
+ <hasPiece rdf:resource="#bking_a2_11"/>
+ <hasPiece rdf:resource="#wking_c2_11"/>
+ <hasPiece rdf:resource="#wrook_a5_11"/>
+ </ZERO>
+
+
+
+ <!-- http://www.test.de/test#game12 -->
+
+ <Game rdf:about="#game12">
+ <rdf:type rdf:resource="#ZERO"/>
+ <hasPiece rdf:resource="#bking_a1_12"/>
+ <hasPiece rdf:resource="#wking_c2_12"/>
+ <hasPiece rdf:resource="#wrook_a6_12"/>
+ </Game>
+
+
+
+ <!-- http://www.test.de/test#game13 -->
+
+ <ZERO rdf:about="#game13">
+ <rdf:type rdf:resource="#Game"/>
+ <hasPiece rdf:resource="#bking_a2_13"/>
+ <hasPiece rdf:resource="#wrook_a6_13"/>
+ <hasPiece rdf:resource="#wking_c2_13"/>
+ </ZERO>
+
+
+
+ <!-- http://www.test.de/test#game14 -->
+
+ <ZERO rdf:about="#game14">
+ <rdf:type rdf:resource="#Game"/>
+ <hasPiece rdf:resource="#bking_a1_14"/>
+ <hasPiece rdf:resource="#wrook_a7_14"/>
+ <hasPiece rdf:resource="#wking_c2_14"/>
+ </ZERO>
+
+
+
+ <!-- http://www.test.de/test#game15 -->
+
+ <ZERO rdf:about="#game15">
+ <rdf:type rdf:resource="#Game"/>
+ <hasPiece rdf:resource="#bking_a2_15"/>
+ <hasPiece rdf:resource="#wrook_a7_15"/>
+ <hasPiece rdf:resource="#wking_c2_15"/>
+ </ZERO>
+
+
+
+ <!-- http://www.test.de/test#game16 -->
+
+ <ZERO rdf:about="#game16">
+ <rdf:type rdf:resource="#Game"/>
+ <hasPiece rdf:resource="#wking_c2_16"/>
+ <hasPiece rdf:resource="#bking_a1_16"/>
+ <hasPiece rdf:resource="#wrook_a8_16"/>
+ </ZERO>
+
+
+
+ <!-- http://www.test.de/test#game17 -->
+
+ <Game rdf:about="#game17">
+ <rdf:type rdf:resource="#ZERO"/>
+ <hasPiece rdf:resource="#wking_c2_17"/>
+ <hasPiece rdf:resource="#bking_a2_17"/>
+ <hasPiece rdf:resource="#wrook_a8_17"/>
+ </Game>
+
+
+
+ <!-- http://www.test.de/test#game18 -->
+
+ <Game rdf:about="#game18">
+ <rdf:type rdf:resource="#ZERO"/>
+ <hasPiece rdf:resource="#bking_c1_18"/>
+ <hasPiece rdf:resource="#wking_c3_18"/>
+ <hasPiece rdf:resource="#wrook_a1_18"/>
+ </Game>
+
+
+
+ <!-- http://www.test.de/test#game19 -->
+
+ <Game rdf:about="#game19">
+ <rdf:type rdf:resource="#ZERO"/>
+ <hasPiece rdf:resource="#wking_c3_19"/>
+ <hasPiece rdf:resource="#bking_c1_19"/>
+ <hasPiece rdf:resource="#wrook_e1_19"/>
+ </Game>
+
+
+
+ <!-- http://www.test.de/test#game2 -->
+
+ <Game rdf:about="#game2">
+ <rdf:type rdf:resource="#ZERO"/>
+ <hasPiece rdf:resource="#wking_c1_2"/>
+ <hasPiece rdf:resource="#bking_a1_2"/>
+ <hasPiece rdf:resource="#wrook_a4_2"/>
+ </Game>
+
+
+
+ <!-- http://www.test.de/test#game20 -->
+
+ <Game rdf:about="#game20">
+ <rdf:type rdf:resource="#ZERO"/>
+ <hasPiece rdf:resource="#wrook_f1_20"/>
+ <hasPiece...
[truncated message content] |
|
From: <jen...@us...> - 2008-03-20 11:35:48
|
Revision: 718
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=718&view=rev
Author: jenslehmann
Date: 2008-03-20 04:35:37 -0700 (Thu, 20 Mar 2008)
Log Message:
-----------
fixed path
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/test/ComponentTest.java
Modified: trunk/src/dl-learner/org/dllearner/test/ComponentTest.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/test/ComponentTest.java 2008-03-19 16:15:18 UTC (rev 717)
+++ trunk/src/dl-learner/org/dllearner/test/ComponentTest.java 2008-03-20 11:35:37 UTC (rev 718)
@@ -55,7 +55,7 @@
// create knowledge source
KnowledgeSource source = cm.knowledgeSource(OWLFile.class);
- String example = "examples/father.owl";
+ String example = "examples/family/father.owl";
cm.applyConfigEntry(source, "url", new File(example).toURI().toString());
source.init();
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jen...@us...> - 2008-03-19 16:15:56
|
Revision: 717
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=717&view=rev
Author: jenslehmann
Date: 2008-03-19 09:15:18 -0700 (Wed, 19 Mar 2008)
Log Message:
-----------
added template for DBpedia navigation link suggestor
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
Added Paths:
-----------
trunk/src/dl-learner/org/dllearner/algorithms/DBpediaNavigationSuggestor.java
Added: trunk/src/dl-learner/org/dllearner/algorithms/DBpediaNavigationSuggestor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/DBpediaNavigationSuggestor.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/algorithms/DBpediaNavigationSuggestor.java 2008-03-19 16:15:18 UTC (rev 717)
@@ -0,0 +1,85 @@
+/**
+ * Copyright (C) 2007-2008, Jens Lehmann
+ *
+ * This file is part of DL-Learner.
+ *
+ * DL-Learner is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * DL-Learner is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ *
+ */
+package org.dllearner.algorithms;
+
+import org.dllearner.core.ComponentInitException;
+import org.dllearner.core.LearningAlgorithm;
+import org.dllearner.core.ReasoningService;
+import org.dllearner.core.Score;
+import org.dllearner.core.config.ConfigEntry;
+import org.dllearner.core.config.InvalidConfigOptionValueException;
+import org.dllearner.core.owl.Description;
+import org.dllearner.learningproblems.PosNegLP;
+import org.dllearner.learningproblems.PosOnlyDefinitionLP;
+
+/**
+ * The DBpedia Navigation suggestor takes a knowledge fragment extracted
+ * from DBpedia, performs some preprocessing steps, invokes a learning
+ * algorithm, and then performs postprocessing steps. It does not
+ * implement a completely new learning algorithm itself, but uses the
+ * example based refinement operator learning algorithm.
+ *
+ * @author Jens Lehmann
+ *
+ */
+public class DBpediaNavigationSuggestor extends LearningAlgorithm {
+
+ public DBpediaNavigationSuggestor(PosNegLP learningProblem, ReasoningService rs) {
+
+ }
+
+ public DBpediaNavigationSuggestor(PosOnlyDefinitionLP learningProblem, ReasoningService rs) {
+
+ }
+
+ @Override
+ public <T> void applyConfigEntry(ConfigEntry<T> entry) throws InvalidConfigOptionValueException {
+ // TODO Auto-generated method stub
+ }
+
+ @Override
+ public void init() throws ComponentInitException {
+ // TODO Auto-generated method stub
+ }
+
+ @Override
+ public void start() {
+ // TODO Auto-generated method stub
+ }
+
+ @Override
+ public void stop() {
+ // TODO Auto-generated method stub
+
+ }
+
+ @Override
+ public Description getBestSolution() {
+ // TODO Auto-generated method stub
+ return null;
+ }
+
+ @Override
+ public Score getSolutionScore() {
+ // TODO Auto-generated method stub
+ return null;
+ }
+
+}
Modified: trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java 2008-03-19 14:29:21 UTC (rev 716)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java 2008-03-19 16:15:18 UTC (rev 717)
@@ -519,6 +519,7 @@
Thread laThread = new Thread()
{
+ @Override
public void run(){
la.start();
}
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jen...@us...> - 2008-03-19 14:30:20
|
Revision: 716
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=716&view=rev
Author: jenslehmann
Date: 2008-03-19 07:29:21 -0700 (Wed, 19 Mar 2008)
Log Message:
-----------
added carcinogenesis data
Added Paths:
-----------
trunk/examples/carcinogenesis/
trunk/examples/carcinogenesis/README.txt
trunk/examples/carcinogenesis/carcinogenesis.owl
trunk/examples/carcinogenesis/prolog/
trunk/examples/carcinogenesis/prolog/ames.pl
trunk/examples/carcinogenesis/prolog/atoms.pl
trunk/examples/carcinogenesis/prolog/bonds.pl
trunk/examples/carcinogenesis/prolog/gentoxprops.pl
trunk/examples/carcinogenesis/prolog/ind_nos.pl
trunk/examples/carcinogenesis/prolog/ind_pos.pl
trunk/examples/carcinogenesis/prolog/mutagenesis.pl
trunk/examples/carcinogenesis/prolog/newgroups.pl
trunk/examples/carcinogenesis/prolog/pte1.f
trunk/examples/carcinogenesis/prolog/pte1.n
trunk/examples/carcinogenesis/prolog/train.b
trunk/examples/carcinogenesis/prolog/train.f
trunk/examples/carcinogenesis/prolog/train.n
trunk/examples/carcinogenesis/train.conf
Added: trunk/examples/carcinogenesis/README.txt
===================================================================
--- trunk/examples/carcinogenesis/README.txt (rev 0)
+++ trunk/examples/carcinogenesis/README.txt 2008-03-19 14:29:21 UTC (rev 716)
@@ -0,0 +1,9 @@
+The data for carcinogenesis prediction was contributed to the Machine
+Learning community by the U.S. National Toxicology Program (NTP) [1].
+They were made available in Progol/Prolog format [2]. DL-Learner
+contains a Prolog parser, which was used to read in the data. Using a
+set of mapping rules, they were converted into an OWL ontology, which
+is made available here.
+
+http://ntp-server.niehs.nih.gov/
+http://web2.comlab.ox.ac.uk/oucl/research/areas/machlearn/cancer.html
Added: trunk/examples/carcinogenesis/carcinogenesis.owl
===================================================================
--- trunk/examples/carcinogenesis/carcinogenesis.owl (rev 0)
+++ trunk/examples/carcinogenesis/carcinogenesis.owl 2008-03-19 14:29:21 UTC (rev 716)
@@ -0,0 +1,206306 @@
+<?xml version="1.0"?>
+
+
+<!DOCTYPE rdf:RDF [
+ <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
+ <!ENTITY owl11 "http://www.w3.org/2006/12/owl11#" >
+ <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
+ <!ENTITY owl11xml "http://www.w3.org/2006/12/owl11-xml#" >
+ <!ENTITY carcinogenesis "http://dl-learner.org/carcinogenesis#" >
+ <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
+ <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
+]>
+
+
+<rdf:RDF xmlns="http://dl-learner.org/carcinogenesis#"
+ xml:base="http://dl-learner.org/carcinogenesis"
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:owl11="http://www.w3.org/2006/12/owl11#"
+ xmlns:carcinogenesis="http://dl-learner.org/carcinogenesis#"
+ xmlns:owl11xml="http://www.w3.org/2006/12/owl11-xml#"
+ xmlns:owl="http://www.w3.org/2002/07/owl#"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ <owl:Ontology rdf:about=""/>
+
+
+
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Object Properties
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
+
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#hasAtom -->
+
+ <owl:ObjectProperty rdf:about="#hasAtom">
+ <rdfs:domain rdf:resource="#Compound"/>
+ <rdfs:range rdf:resource="#Atom"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#hasBond -->
+
+ <owl:ObjectProperty rdf:about="#hasBond">
+ <rdfs:domain rdf:resource="#Compound"/>
+ <rdfs:range rdf:resource="#Bond"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#hasStructure -->
+
+ <owl:ObjectProperty rdf:about="#hasStructure">
+ <rdfs:domain rdf:resource="#Compound"/>
+ <rdfs:range rdf:resource="#Structure"/>
+ </owl:ObjectProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#inBond -->
+
+ <owl:ObjectProperty rdf:about="#inBond">
+ <rdfs:range rdf:resource="#Atom"/>
+ <rdfs:domain rdf:resource="#Bond"/>
+ </owl:ObjectProperty>
+
+
+
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Data properties
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
+
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#amesTestPositive -->
+
+ <owl:DatatypeProperty rdf:about="#amesTestPositive">
+ <rdfs:domain rdf:resource="#Compound"/>
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#charge -->
+
+ <owl:DatatypeProperty rdf:about="#charge">
+ <rdfs:domain rdf:resource="#Atom"/>
+ <rdfs:range rdf:resource="&xsd;double"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#chromaberr -->
+
+ <owl:DatatypeProperty rdf:about="#chromaberr">
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ <rdfs:domain rdf:resource="#Compound"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#chromex -->
+
+ <owl:DatatypeProperty rdf:about="#chromex">
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ <rdfs:domain rdf:resource="#Compound"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#cytogen_ca -->
+
+ <owl:DatatypeProperty rdf:about="#cytogen_ca">
+ <rdfs:domain rdf:resource="#Compound"/>
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#cytogen_sce -->
+
+ <owl:DatatypeProperty rdf:about="#cytogen_sce">
+ <rdfs:domain rdf:resource="#Compound"/>
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#drosophila_rt -->
+
+ <owl:DatatypeProperty rdf:about="#drosophila_rt">
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ <rdfs:domain rdf:resource="#Compound"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#drosophila_slrl -->
+
+ <owl:DatatypeProperty rdf:about="#drosophila_slrl">
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ <rdfs:domain rdf:resource="#Compound"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#isMutagenic -->
+
+ <owl:DatatypeProperty rdf:about="#isMutagenic">
+ <rdfs:domain rdf:resource="#Compound"/>
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#micronuc_f -->
+
+ <owl:DatatypeProperty rdf:about="#micronuc_f">
+ <rdfs:domain rdf:resource="#Compound"/>
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#micronuc_m -->
+
+ <owl:DatatypeProperty rdf:about="#micronuc_m">
+ <rdfs:domain rdf:resource="#Compound"/>
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#mouse_lymph -->
+
+ <owl:DatatypeProperty rdf:about="#mouse_lymph">
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ <rdfs:domain rdf:resource="#Compound"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#salmonella -->
+
+ <owl:DatatypeProperty rdf:about="#salmonella">
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ <rdfs:domain rdf:resource="#Compound"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#salmonella_n -->
+
+ <owl:DatatypeProperty rdf:about="#salmonella_n">
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ <rdfs:domain rdf:resource="#Compound"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#salmonella_reduc -->
+
+ <owl:DatatypeProperty rdf:about="#salmonella_reduc">
+ <rdfs:domain rdf:resource="#Compound"/>
+ <rdfs:range rdf:resource="&xsd;boolean"/>
+ </owl:DatatypeProperty>
+
+
+
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Classes
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
+
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Alcohol -->
+
+ <owl:Class rdf:about="#Alcohol">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Alkyl_halide -->
+
+ <owl:Class rdf:about="#Alkyl_halide">
+ <rdfs:subClassOf rdf:resource="#Halide"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Amine -->
+
+ <owl:Class rdf:about="#Amine">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Amino -->
+
+ <owl:Class rdf:about="#Amino">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Ar_halide -->
+
+ <owl:Class rdf:about="#Ar_halide">
+ <rdfs:subClassOf rdf:resource="#Halide"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Arsenic -->
+
+ <owl:Class rdf:about="#Arsenic">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Arsenic-101 -->
+
+ <owl:Class rdf:about="#Arsenic-101">
+ <rdfs:subClassOf rdf:resource="#Arsenic"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Atom -->
+
+ <owl:Class rdf:about="#Atom"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Barium -->
+
+ <owl:Class rdf:about="#Barium">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Barium-115 -->
+
+ <owl:Class rdf:about="#Barium-115">
+ <rdfs:subClassOf rdf:resource="#Barium"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Bond -->
+
+ <owl:Class rdf:about="#Bond">
+ <owl:disjointWith rdf:resource="#Structure"/>
+ <owl:disjointWith rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Bond-1 -->
+
+ <owl:Class rdf:about="#Bond-1">
+ <rdfs:subClassOf rdf:resource="#Bond"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Bond-2 -->
+
+ <owl:Class rdf:about="#Bond-2">
+ <rdfs:subClassOf rdf:resource="#Bond"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Bond-3 -->
+
+ <owl:Class rdf:about="#Bond-3">
+ <rdfs:subClassOf rdf:resource="#Bond"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Bond-7 -->
+
+ <owl:Class rdf:about="#Bond-7">
+ <rdfs:subClassOf rdf:resource="#Bond"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Bromine -->
+
+ <owl:Class rdf:about="#Bromine">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Bromine-94 -->
+
+ <owl:Class rdf:about="#Bromine-94">
+ <rdfs:subClassOf rdf:resource="#Bromine"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Calcium -->
+
+ <owl:Class rdf:about="#Calcium">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Calcium-84 -->
+
+ <owl:Class rdf:about="#Calcium-84">
+ <rdfs:subClassOf rdf:resource="#Calcium"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon -->
+
+ <owl:Class rdf:about="#Carbon">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-10 -->
+
+ <owl:Class rdf:about="#Carbon-10">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-14 -->
+
+ <owl:Class rdf:about="#Carbon-14">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-15 -->
+
+ <owl:Class rdf:about="#Carbon-15">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-16 -->
+
+ <owl:Class rdf:about="#Carbon-16">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-17 -->
+
+ <owl:Class rdf:about="#Carbon-17">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-19 -->
+
+ <owl:Class rdf:about="#Carbon-19">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-191 -->
+
+ <owl:Class rdf:about="#Carbon-191">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-192 -->
+
+ <owl:Class rdf:about="#Carbon-192">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-193 -->
+
+ <owl:Class rdf:about="#Carbon-193">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-21 -->
+
+ <owl:Class rdf:about="#Carbon-21">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-22 -->
+
+ <owl:Class rdf:about="#Carbon-22">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-232 -->
+
+ <owl:Class rdf:about="#Carbon-232">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-26 -->
+
+ <owl:Class rdf:about="#Carbon-26">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-27 -->
+
+ <owl:Class rdf:about="#Carbon-27">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Carbon-29 -->
+
+ <owl:Class rdf:about="#Carbon-29">
+ <rdfs:subClassOf rdf:resource="#Carbon"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Chlorine -->
+
+ <owl:Class rdf:about="#Chlorine">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Chlorine-93 -->
+
+ <owl:Class rdf:about="#Chlorine-93">
+ <rdfs:subClassOf rdf:resource="#Chlorine"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Compound -->
+
+ <owl:Class rdf:about="#Compound">
+ <owl:disjointWith rdf:resource="#Structure"/>
+ <owl:disjointWith rdf:resource="#Atom"/>
+ <owl:disjointWith rdf:resource="#Bond"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Copper -->
+
+ <owl:Class rdf:about="#Copper">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Copper-96 -->
+
+ <owl:Class rdf:about="#Copper-96">
+ <rdfs:subClassOf rdf:resource="#Copper"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Cyanate -->
+
+ <owl:Class rdf:about="#Cyanate">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di -->
+
+ <owl:Class rdf:about="#Di">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di10 -->
+
+ <owl:Class rdf:about="#Di10">
+ <rdfs:subClassOf rdf:resource="#Di"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di227 -->
+
+ <owl:Class rdf:about="#Di227">
+ <rdfs:subClassOf rdf:resource="#Di"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di23 -->
+
+ <owl:Class rdf:about="#Di23">
+ <rdfs:subClassOf rdf:resource="#Di"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di232 -->
+
+ <owl:Class rdf:about="#Di232">
+ <rdfs:subClassOf rdf:resource="#Di"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di260 -->
+
+ <owl:Class rdf:about="#Di260">
+ <rdfs:subClassOf rdf:resource="#Di"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di281 -->
+
+ <owl:Class rdf:about="#Di281">
+ <rdfs:subClassOf rdf:resource="#Di"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di48 -->
+
+ <owl:Class rdf:about="#Di48">
+ <rdfs:subClassOf rdf:resource="#Di"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di51 -->
+
+ <owl:Class rdf:about="#Di51">
+ <rdfs:subClassOf rdf:resource="#Di"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di64 -->
+
+ <owl:Class rdf:about="#Di64">
+ <rdfs:subClassOf rdf:resource="#Di"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di66 -->
+
+ <owl:Class rdf:about="#Di66">
+ <rdfs:subClassOf rdf:resource="#Di"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di67a -->
+
+ <owl:Class rdf:about="#Di67a">
+ <rdfs:subClassOf rdf:resource="#Di"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Di8 -->
+
+ <owl:Class rdf:about="#Di8">
+ <rdfs:subClassOf rdf:resource="#Di"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Ester -->
+
+ <owl:Class rdf:about="#Ester">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Ether -->
+
+ <owl:Class rdf:about="#Ether">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Ethoxy -->
+
+ <owl:Class rdf:about="#Ethoxy">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Five_ring -->
+
+ <owl:Class rdf:about="#Five_ring">
+ <rdfs:subClassOf rdf:resource="#Ring"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Fluorine -->
+
+ <owl:Class rdf:about="#Fluorine">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Fluorine-92 -->
+
+ <owl:Class rdf:about="#Fluorine-92">
+ <rdfs:subClassOf rdf:resource="#Fluorine"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Gallium -->
+
+ <owl:Class rdf:about="#Gallium">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Halide -->
+
+ <owl:Class rdf:about="#Halide">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Halide10 -->
+
+ <owl:Class rdf:about="#Halide10">
+ <rdfs:subClassOf rdf:resource="#Halide"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Hydrogen -->
+
+ <owl:Class rdf:about="#Hydrogen">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Hydrogen-1 -->
+
+ <owl:Class rdf:about="#Hydrogen-1">
+ <rdfs:subClassOf rdf:resource="#Hydrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Hydrogen-2 -->
+
+ <owl:Class rdf:about="#Hydrogen-2">
+ <rdfs:subClassOf rdf:resource="#Hydrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Hydrogen-3 -->
+
+ <owl:Class rdf:about="#Hydrogen-3">
+ <rdfs:subClassOf rdf:resource="#Hydrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Hydrogen-8 -->
+
+ <owl:Class rdf:about="#Hydrogen-8">
+ <rdfs:subClassOf rdf:resource="#Hydrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Imine -->
+
+ <owl:Class rdf:about="#Imine">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Iodine -->
+
+ <owl:Class rdf:about="#Iodine">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Iodine-95 -->
+
+ <owl:Class rdf:about="#Iodine-95">
+ <rdfs:subClassOf rdf:resource="#Iodine"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Ketone -->
+
+ <owl:Class rdf:about="#Ketone">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Krypton -->
+
+ <owl:Class rdf:about="#Krypton">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Krypton-83 -->
+
+ <owl:Class rdf:about="#Krypton-83">
+ <rdfs:subClassOf rdf:resource="#Krypton"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Lead -->
+
+ <owl:Class rdf:about="#Lead">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Lead-121 -->
+
+ <owl:Class rdf:about="#Lead-121">
+ <rdfs:subClassOf rdf:resource="#Lead"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Manganese -->
+
+ <owl:Class rdf:about="#Manganese">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Manganese-85 -->
+
+ <owl:Class rdf:about="#Manganese-85">
+ <rdfs:subClassOf rdf:resource="#Manganese"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Mercury -->
+
+ <owl:Class rdf:about="#Mercury">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Mercury-120 -->
+
+ <owl:Class rdf:about="#Mercury-120">
+ <rdfs:subClassOf rdf:resource="#Mercury"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Methanol -->
+
+ <owl:Class rdf:about="#Methanol">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Methoxy -->
+
+ <owl:Class rdf:about="#Methoxy">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Methyl -->
+
+ <owl:Class rdf:about="#Methyl">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Molybdenum -->
+
+ <owl:Class rdf:about="#Molybdenum">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Nitro -->
+
+ <owl:Class rdf:about="#Nitro">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Nitrogen -->
+
+ <owl:Class rdf:about="#Nitrogen">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Nitrogen-31 -->
+
+ <owl:Class rdf:about="#Nitrogen-31">
+ <rdfs:subClassOf rdf:resource="#Nitrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Nitrogen-32 -->
+
+ <owl:Class rdf:about="#Nitrogen-32">
+ <rdfs:subClassOf rdf:resource="#Nitrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Nitrogen-33 -->
+
+ <owl:Class rdf:about="#Nitrogen-33">
+ <rdfs:subClassOf rdf:resource="#Nitrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Nitrogen-34 -->
+
+ <owl:Class rdf:about="#Nitrogen-34">
+ <rdfs:subClassOf rdf:resource="#Nitrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Nitrogen-35 -->
+
+ <owl:Class rdf:about="#Nitrogen-35">
+ <rdfs:subClassOf rdf:resource="#Nitrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Nitrogen-36 -->
+
+ <owl:Class rdf:about="#Nitrogen-36">
+ <rdfs:subClassOf rdf:resource="#Nitrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Nitrogen-37 -->
+
+ <owl:Class rdf:about="#Nitrogen-37">
+ <rdfs:subClassOf rdf:resource="#Nitrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Nitrogen-38 -->
+
+ <owl:Class rdf:about="#Nitrogen-38">
+ <rdfs:subClassOf rdf:resource="#Nitrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Nitrogen-499 -->
+
+ <owl:Class rdf:about="#Nitrogen-499">
+ <rdfs:subClassOf rdf:resource="#Nitrogen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Non_ar_5c_ring -->
+
+ <owl:Class rdf:about="#Non_ar_5c_ring">
+ <rdfs:subClassOf rdf:resource="#Ring"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Non_ar_6c_ring -->
+
+ <owl:Class rdf:about="#Non_ar_6c_ring">
+ <rdfs:subClassOf rdf:resource="#Ring"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Non_ar_hetero_5_ring -->
+
+ <owl:Class rdf:about="#Non_ar_hetero_5_ring">
+ <rdfs:subClassOf rdf:resource="#Ring"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Non_ar_hetero_6_ring -->
+
+ <owl:Class rdf:about="#Non_ar_hetero_6_ring">
+ <rdfs:subClassOf rdf:resource="#Ring"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Oxygen -->
+
+ <owl:Class rdf:about="#Oxygen">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Oxygen-40 -->
+
+ <owl:Class rdf:about="#Oxygen-40">
+ <rdfs:subClassOf rdf:resource="#Oxygen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Oxygen-41 -->
+
+ <owl:Class rdf:about="#Oxygen-41">
+ <rdfs:subClassOf rdf:resource="#Oxygen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Oxygen-42 -->
+
+ <owl:Class rdf:about="#Oxygen-42">
+ <rdfs:subClassOf rdf:resource="#Oxygen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Oxygen-45 -->
+
+ <owl:Class rdf:about="#Oxygen-45">
+ <rdfs:subClassOf rdf:resource="#Oxygen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Oxygen-49 -->
+
+ <owl:Class rdf:about="#Oxygen-49">
+ <rdfs:subClassOf rdf:resource="#Oxygen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Oxygen-50 -->
+
+ <owl:Class rdf:about="#Oxygen-50">
+ <rdfs:subClassOf rdf:resource="#Oxygen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Oxygen-51 -->
+
+ <owl:Class rdf:about="#Oxygen-51">
+ <rdfs:subClassOf rdf:resource="#Oxygen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Oxygen-52 -->
+
+ <owl:Class rdf:about="#Oxygen-52">
+ <rdfs:subClassOf rdf:resource="#Oxygen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Oxygen-53 -->
+
+ <owl:Class rdf:about="#Oxygen-53">
+ <rdfs:subClassOf rdf:resource="#Oxygen"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Phenol -->
+
+ <owl:Class rdf:about="#Phenol">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Phosphorus -->
+
+ <owl:Class rdf:about="#Phosphorus">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Phosphorus-60 -->
+
+ <owl:Class rdf:about="#Phosphorus-60">
+ <rdfs:subClassOf rdf:resource="#Phosphorus"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Phosphorus-61 -->
+
+ <owl:Class rdf:about="#Phosphorus-61">
+ <rdfs:subClassOf rdf:resource="#Phosphorus"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Phosphorus-62 -->
+
+ <owl:Class rdf:about="#Phosphorus-62">
+ <rdfs:subClassOf rdf:resource="#Phosphorus"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Ring -->
+
+ <owl:Class rdf:about="#Ring">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Ring_size_4 -->
+
+ <owl:Class rdf:about="#Ring_size_4">
+ <rdfs:subClassOf rdf:resource="#Ring"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Selenium -->
+
+ <owl:Class rdf:about="#Selenium">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Selenium-102 -->
+
+ <owl:Class rdf:about="#Selenium-102">
+ <rdfs:subClassOf rdf:resource="#Selenium"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Six_ring -->
+
+ <owl:Class rdf:about="#Six_ring">
+ <rdfs:subClassOf rdf:resource="#Ring"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sodium -->
+
+ <owl:Class rdf:about="#Sodium">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sodium-81 -->
+
+ <owl:Class rdf:about="#Sodium-81">
+ <rdfs:subClassOf rdf:resource="#Sodium"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Structure -->
+
+ <owl:Class rdf:about="#Structure">
+ <owl:disjointWith rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sulfide -->
+
+ <owl:Class rdf:about="#Sulfide">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sulfo -->
+
+ <owl:Class rdf:about="#Sulfo">
+ <rdfs:subClassOf rdf:resource="#Structure"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sulfur -->
+
+ <owl:Class rdf:about="#Sulfur">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sulfur-70 -->
+
+ <owl:Class rdf:about="#Sulfur-70">
+ <rdfs:subClassOf rdf:resource="#Sulfur"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sulfur-72 -->
+
+ <owl:Class rdf:about="#Sulfur-72">
+ <rdfs:subClassOf rdf:resource="#Sulfur"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sulfur-74 -->
+
+ <owl:Class rdf:about="#Sulfur-74">
+ <rdfs:subClassOf rdf:resource="#Sulfur"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sulfur-75 -->
+
+ <owl:Class rdf:about="#Sulfur-75">
+ <rdfs:subClassOf rdf:resource="#Sulfur"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sulfur-76 -->
+
+ <owl:Class rdf:about="#Sulfur-76">
+ <rdfs:subClassOf rdf:resource="#Sulfur"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sulfur-77 -->
+
+ <owl:Class rdf:about="#Sulfur-77">
+ <rdfs:subClassOf rdf:resource="#Sulfur"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sulfur-78 -->
+
+ <owl:Class rdf:about="#Sulfur-78">
+ <rdfs:subClassOf rdf:resource="#Sulfur"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Sulfur-79 -->
+
+ <owl:Class rdf:about="#Sulfur-79">
+ <rdfs:subClassOf rdf:resource="#Sulfur"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Tellurium -->
+
+ <owl:Class rdf:about="#Tellurium">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Tellurium-129 -->
+
+ <owl:Class rdf:about="#Tellurium-129">
+ <rdfs:subClassOf rdf:resource="#Tellurium"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Tin -->
+
+ <owl:Class rdf:about="#Tin">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Tin-113 -->
+
+ <owl:Class rdf:about="#Tin-113">
+ <rdfs:subClassOf rdf:resource="#Tin"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Titanium -->
+
+ <owl:Class rdf:about="#Titanium">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Titanium-134 -->
+
+ <owl:Class rdf:about="#Titanium-134">
+ <rdfs:subClassOf rdf:resource="#Titanium"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Vanadium -->
+
+ <owl:Class rdf:about="#Vanadium">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Zinc -->
+
+ <owl:Class rdf:about="#Zinc">
+ <rdfs:subClassOf rdf:resource="#Atom"/>
+ </owl:Class>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#Zinc-87 -->
+
+ <owl:Class rdf:about="#Zinc-87">
+ <rdfs:subClassOf rdf:resource="#Zinc"/>
+ </owl:Class>
+
+
+
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Individuals
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
+
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1029 -->
+
+ <Alcohol rdf:about="#alcohol-1029"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1030 -->
+
+ <Alcohol rdf:about="#alcohol-1030"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1031 -->
+
+ <Alcohol rdf:about="#alcohol-1031"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1032 -->
+
+ <Alcohol rdf:about="#alcohol-1032"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1069 -->
+
+ <Alcohol rdf:about="#alcohol-1069"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1070 -->
+
+ <Alcohol rdf:about="#alcohol-1070"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1071 -->
+
+ <Alcohol rdf:about="#alcohol-1071"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1072 -->
+
+ <Alcohol rdf:about="#alcohol-1072"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1073 -->
+
+ <Alcohol rdf:about="#alcohol-1073"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1074 -->
+
+ <Alcohol rdf:about="#alcohol-1074"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-11 -->
+
+ <Alcohol rdf:about="#alcohol-11"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1107 -->
+
+ <Alcohol rdf:about="#alcohol-1107"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1128 -->
+
+ <Alcohol rdf:about="#alcohol-1128"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1322 -->
+
+ <Alcohol rdf:about="#alcohol-1322"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-158 -->
+
+ <Alcohol rdf:about="#alcohol-158"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1581 -->
+
+ <Alcohol rdf:about="#alcohol-1581"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1585 -->
+
+ <Alcohol rdf:about="#alcohol-1585"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1586 -->
+
+ <Alcohol rdf:about="#alcohol-1586"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-165 -->
+
+ <Alcohol rdf:about="#alcohol-165"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1787 -->
+
+ <Alcohol rdf:about="#alcohol-1787"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1833 -->
+
+ <Alcohol rdf:about="#alcohol-1833"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1834 -->
+
+ <Alcohol rdf:about="#alcohol-1834"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1835 -->
+
+ <Alcohol rdf:about="#alcohol-1835"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1836 -->
+
+ <Alcohol rdf:about="#alcohol-1836"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1950 -->
+
+ <Alcohol rdf:about="#alcohol-1950"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-1957 -->
+
+ <Alcohol rdf:about="#alcohol-1957"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2019 -->
+
+ <Alcohol rdf:about="#alcohol-2019"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2045 -->
+
+ <Alcohol rdf:about="#alcohol-2045"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2046 -->
+
+ <Alcohol rdf:about="#alcohol-2046"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2047 -->
+
+ <Alcohol rdf:about="#alcohol-2047"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2110 -->
+
+ <Alcohol rdf:about="#alcohol-2110"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2120 -->
+
+ <Alcohol rdf:about="#alcohol-2120"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2131 -->
+
+ <Alcohol rdf:about="#alcohol-2131"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2132 -->
+
+ <Alcohol rdf:about="#alcohol-2132"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2133 -->
+
+ <Alcohol rdf:about="#alcohol-2133"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2134 -->
+
+ <Alcohol rdf:about="#alcohol-2134"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2155 -->
+
+ <Alcohol rdf:about="#alcohol-2155"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2156 -->
+
+ <Alcohol rdf:about="#alcohol-2156"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2158 -->
+
+ <Alcohol rdf:about="#alcohol-2158"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2172 -->
+
+ <Alcohol rdf:about="#alcohol-2172"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2173 -->
+
+ <Alcohol rdf:about="#alcohol-2173"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2258 -->
+
+ <Alcohol rdf:about="#alcohol-2258"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2259 -->
+
+ <Alcohol rdf:about="#alcohol-2259"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2280 -->
+
+ <Alcohol rdf:about="#alcohol-2280"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2304 -->
+
+ <Alcohol rdf:about="#alcohol-2304"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2305 -->
+
+ <Alcohol rdf:about="#alcohol-2305"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2306 -->
+
+ <Alcohol rdf:about="#alcohol-2306"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2307 -->
+
+ <Alcohol rdf:about="#alcohol-2307"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2370 -->
+
+ <Alcohol rdf:about="#alcohol-2370"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2391 -->
+
+ <Alcohol rdf:about="#alcohol-2391"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2392 -->
+
+ <Alcohol rdf:about="#alcohol-2392"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-240 -->
+
+ <Alcohol rdf:about="#alcohol-240"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2422 -->
+
+ <Alcohol rdf:about="#alcohol-2422"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2423 -->
+
+ <Alcohol rdf:about="#alcohol-2423"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2424 -->
+
+ <Alcohol rdf:about="#alcohol-2424"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2425 -->
+
+ <Alcohol rdf:about="#alcohol-2425"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2459 -->
+
+ <Alcohol rdf:about="#alcohol-2459"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2471 -->
+
+ <Alcohol rdf:about="#alcohol-2471"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2472 -->
+
+ <Alcohol rdf:about="#alcohol-2472"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2509 -->
+
+ <Alcohol rdf:about="#alcohol-2509"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2626 -->
+
+ <Alcohol rdf:about="#alcohol-2626"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2627 -->
+
+ <Alcohol rdf:about="#alcohol-2627"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2639 -->
+
+ <Alcohol rdf:about="#alcohol-2639"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2711 -->
+
+ <Alcohol rdf:about="#alcohol-2711"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2726 -->
+
+ <Alcohol rdf:about="#alcohol-2726"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2727 -->
+
+ <Alcohol rdf:about="#alcohol-2727"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2796 -->
+
+ <Alcohol rdf:about="#alcohol-2796"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2851 -->
+
+ <Alcohol rdf:about="#alcohol-2851"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2852 -->
+
+ <Alcohol rdf:about="#alcohol-2852"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-2853 -->
+
+ <Alcohol rdf:about="#alcohol-2853"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-3019 -->
+
+ <Alcohol rdf:about="#alcohol-3019"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-3020 -->
+
+ <Alcohol rdf:about="#alcohol-3020"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-3106 -->
+
+ <Alcohol rdf:about="#alcohol-3106"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-434 -->
+
+ <Alcohol rdf:about="#alcohol-434"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-435 -->
+
+ <Alcohol rdf:about="#alcohol-435"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-487 -->
+
+ <Alcohol rdf:about="#alcohol-487"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-488 -->
+
+ <Alcohol rdf:about="#alcohol-488"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-489 -->
+
+ <Alcohol rdf:about="#alcohol-489"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-537 -->
+
+ <Alcohol rdf:about="#alcohol-537"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-574 -->
+
+ <Alcohol rdf:about="#alcohol-574"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-623 -->
+
+ <Alcohol rdf:about="#alcohol-623"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-677 -->
+
+ <Alcohol rdf:about="#alcohol-677"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-699 -->
+
+ <Alcohol rdf:about="#alcohol-699"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-719 -->
+
+ <Alcohol rdf:about="#alcohol-719"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-720 -->
+
+ <Alcohol rdf:about="#alcohol-720"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-721 -->
+
+ <Alcohol rdf:about="#alcohol-721"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-722 -->
+
+ <Alcohol rdf:about="#alcohol-722"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-790 -->
+
+ <Alcohol rdf:about="#alcohol-790"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-791 -->
+
+ <Alcohol rdf:about="#alcohol-791"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-792 -->
+
+ <Alcohol rdf:about="#alcohol-792"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-793 -->
+
+ <Alcohol rdf:about="#alcohol-793"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-838 -->
+
+ <Alcohol rdf:about="#alcohol-838"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-839 -->
+
+ <Alcohol rdf:about="#alcohol-839"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-840 -->
+
+ <Alcohol rdf:about="#alcohol-840"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-841 -->
+
+ <Alcohol rdf:about="#alcohol-841"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-842 -->
+
+ <Alcohol rdf:about="#alcohol-842"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-855 -->
+
+ <Alcohol rdf:about="#alcohol-855"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-862 -->
+
+ <Alcohol rdf:about="#alcohol-862"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-869 -->
+
+ <Alcohol rdf:about="#alcohol-869"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-903 -->
+
+ <Alcohol rdf:about="#alcohol-903"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-916 -->
+
+ <Alcohol rdf:about="#alcohol-916"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-917 -->
+
+ <Alcohol rdf:about="#alcohol-917"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-924 -->
+
+ <Alcohol rdf:about="#alcohol-924"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-925 -->
+
+ <Alcohol rdf:about="#alcohol-925"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-926 -->
+
+ <Alcohol rdf:about="#alcohol-926"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-927 -->
+
+ <Alcohol rdf:about="#alcohol-927"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-928 -->
+
+ <Alcohol rdf:about="#alcohol-928"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-929 -->
+
+ <Alcohol rdf:about="#alcohol-929"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-980 -->
+
+ <Alcohol rdf:about="#alcohol-980"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alcohol-986 -->
+
+ <Alcohol rdf:about="#alcohol-986"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-116 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-116"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-117 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-117"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-118 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-118"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-119 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-119"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-120 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-120"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-121 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-121"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-122 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-122"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-123 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-123"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-124 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-124"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-125 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-125"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-126 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-126"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-127 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-127"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-128 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-128"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-129 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-129"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-130 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-130"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-131 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-131"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-132 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-132"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-133 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-133"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-134 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-134"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-135 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-135"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1439 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1439"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1440 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1440"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1441 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1441"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1444 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1444"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1445 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1445"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1448 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1448"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1449 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1449"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1452 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1452"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1465 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1465"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1466 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1466"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1512 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1512"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1513 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1513"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1514 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1514"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1515 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1515"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1516 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1516"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1517 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1517"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1522 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1522"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-155 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-155"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1552 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1552"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-156 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-156"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-157 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-157"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1584 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1584"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1607 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1607"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1608 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1608"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1643 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1643"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1644 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1644"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1645 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1645"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1646 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1646"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1683 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1683"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1693 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1693"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1694 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1694"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1699 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1699"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1700 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1700"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1701 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1701"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1723 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1723"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1748 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1748"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1766 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1766"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1783 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1783"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1786 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1786"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1794 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1794"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-1979 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-1979"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2003 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2003"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2004 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2004"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2005 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2005"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2116 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2116"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2153 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2153"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2154 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2154"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-218 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-218"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-219 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-219"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-220 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-220"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-221 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-221"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-222 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-222"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-223 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-223"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-231 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-231"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-232 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-232"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2457 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2457"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2458 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2458"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2489 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2489"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2490 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2490"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2491 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2491"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-252 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-252"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-253 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-253"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-259 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-259"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-274 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-274"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2751 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2751"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2913 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2913"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2914 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2914"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2915 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2915"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2916 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2916"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2917 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2917"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2918 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2918"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2919 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2919"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2920 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2920"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2921 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2921"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2922 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2922"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2923 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2923"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2924 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2924"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alkyl_halide-2925 -->
+
+ <Alkyl_halide rdf:about="#alkyl_halide-2925"/>
+
+
+
+ <!-- http://dl-learner.org/carcinogenesis#alk...
[truncated message content] |
|
From: <jen...@us...> - 2008-03-19 08:11:25
|
Revision: 715
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=715&view=rev
Author: jenslehmann
Date: 2008-03-19 01:11:19 -0700 (Wed, 19 Mar 2008)
Log Message:
-----------
redundancy check bug fixes
changes in heuristic
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java
trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java
trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java
trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java
trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java
Modified: trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java 2008-03-17 10:21:51 UTC (rev 714)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java 2008-03-19 08:11:19 UTC (rev 715)
@@ -115,7 +115,7 @@
// the divide&conquer approach in many ILP programs using a
// clause by clause search; after a period of time the candidate
// set is reduced to focus CPU time on the most promising concepts
- private boolean useCandidateReduction = false;
+ private boolean useCandidateReduction = true;
private int candidatePostReductionSize = 30;
// setting to true gracefully stops the algorithm
@@ -244,24 +244,36 @@
}
public void start() {
+
+ // TODO: write a JUnit test for this problem (long-lasting or infinite loops because
+ // redundant children of a node are called recursively after when the node is extended
+ // twice)
/*
// String conceptStr = "(\"http://dl-learner.org/carcinogenesis#Compound\" AND (>= 2 \"http://dl-learner.org/carcinogenesis#hasStructure\".\"http://dl-learner.org/carcinogenesis#Ar_halide\" OR ((\"http://dl-learner.org/carcinogenesis#amesTestPositive\" IS TRUE) AND >= 5 \"http://dl-learner.org/carcinogenesis#hasBond\". TOP)))";
- String conceptStr = "(\"http://dl-learner.org/carcinogenesis#Compound\" AND ((\"http://dl-learner.org/carcinogenesis#amesTestPositive\" IS TRUE) AND (\"http://dl-learner.org/carcinogenesis#amesTestPositive\" IS TRUE)))";
+// String conceptStr = "(\"http://dl-learner.org/carcinogenesis#Compound\" AND ((\"http://dl-learner.org/carcinogenesis#amesTestPositive\" IS TRUE) AND (\"http://dl-learner.org/carcinogenesis#amesTestPositive\" IS TRUE)))";
+ String conceptStr = "(\"http://dl-learner.org/carcinogenesis#Compound\" AND (>= 3 \"http://dl-learner.org/carcinogenesis#hasStructure\".\"http://dl-learner.org/carcinogenesis#Halide\" OR ((\"http://dl-learner.org/carcinogenesis#amesTestPositive\" IS TRUE) AND ALL \"http://dl-learner.org/carcinogenesis#hasAtom\".TOP)))";
+ String conceptStr2 = "(\"http://dl-learner.org/carcinogenesis#Compound\" AND (>= 4 \"http://dl-learner.org/carcinogenesis#hasStructure\".\"http://dl-learner.org/carcinogenesis#Halide\" OR ((\"http://dl-learner.org/carcinogenesis#amesTestPositive\" IS TRUE) AND ALL \"http://dl-learner.org/carcinogenesis#hasAtom\".TOP)))";
try {
NamedClass struc = new NamedClass("http://dl-learner.org/carcinogenesis#Compound");
Description d = KBParser.parseConcept(conceptStr);
+ Description d2 = KBParser.parseConcept(conceptStr2);
// SortedSet<Description> ds = (SortedSet<Description>) operator.refine(d,15,null,struc);
// System.out.println(ds);
- System.out.println(RhoDRDown.checkIntersection((Intersection)d));
+// System.out.println(RhoDRDown.checkIntersection((Intersection)d));
Set<Individual> coveredNegatives = rs.instanceCheck(d, learningProblem.getNegativeExamples());
Set<Individual> coveredPositives = rs.instanceCheck(d, learningProblem.getPositiveExamples());
ExampleBasedNode ebn = new ExampleBasedNode(d);
ebn.setCoveredExamples(coveredPositives, coveredNegatives);
- extendNodeProper(ebn,15);
+ properRefinements.add(d2);
+ extendNodeProper(ebn,13);
+ extendNodeProper(ebn,14);
+ for(Description refinement: ebn.getChildConcepts())
+ System.out.println("refinement: " + refinement);
+
// Individual i = new Individual("http://dl-learner.org/carcinogenesis#d101");
// for(Individual i : learningProblem.getPositiveExamples())
// rs.instanceCheck(ds.last(), i);
@@ -308,7 +320,7 @@
// print statistics at most once a second
currentTime = System.nanoTime();
- if(currentTime - lastPrintTime > 1000000000) {
+ if(currentTime - lastPrintTime > 3000000000l) {
printStatistics(false);
lastPrintTime = currentTime;
logger.debug("--- loop " + loop + " started ---");
@@ -327,7 +339,7 @@
// Logger.getRootLogger().setLevel(Level.TRACE);
}
- System.out.println("next expanded: " + candidates.last().getShortDescription(nrOfPositiveExamples, nrOfNegativeExamples, baseURI));
+// System.out.println("next expanded: " + candidates.last().getShortDescription(nrOfPositiveExamples, nrOfNegativeExamples, baseURI));
// chose best node according to heuristics
bestNode = candidates.last();
// extend best node
@@ -434,8 +446,11 @@
childConceptsDeletionTimeNs += System.nanoTime() - childConceptsDeletionTimeNsStart;
-// if(refinements.size()<30)
-// System.out.println("refinements: " + refinements);
+// if(refinements.size()<30) {
+//// System.out.println("refinements: " + refinements);
+// for(Description refinement: refinements)
+// System.out.println("refinement: " + refinement);
+// }
long evaluateSetCreationTimeNsStart = System.nanoTime();
@@ -463,7 +478,7 @@
propernessTestsAvoidedByShortConceptConstruction++;
propernessDetected = true;
- System.out.println("refinement " + refinement + " can be shortened");
+// System.out.println("refinement " + refinement + " can be shortened");
// System.exit(0);
}
}
@@ -517,7 +532,7 @@
}
evaluateSetCreationTimeNs += System.nanoTime() - evaluateSetCreationTimeNsStart;
-// System.out.println("intermediate 1");
+// System.out.println("intermediate 1 " + node.getShortDescription(nrOfPositiveExamples, nrOfNegativeExamples, baseURI));
// System.out.println(toEvaluateConcepts.size());
@@ -678,8 +693,17 @@
for(Description refinement : refinements) {
// for(int i=0; i<=recDepth; i++)
// System.out.print(" ");
-// System.out.println("call: " + refinement + " [maxLength " + maxLength + "]");
- extendNodeProper(node, refinement, maxLength, recDepth+1);
+// System.out.println("call: " + refinement + " [maxLength " + maxLength + ", rec depth " + recDepth + "]");
+
+ // check for redundancy (otherwise we may run into very time-intensive loops,
+ // see planned JUnit test case $x)
+
+ long redundancyCheckTimeNsStart = System.nanoTime();
+ boolean redundant = properRefinements.contains(refinement);
+ redundancyCheckTimeNs += System.nanoTime() - redundancyCheckTimeNsStart;
+
+ if(!redundant)
+ extendNodeProper(node, refinement, maxLength, recDepth+1);
// for(int i=0; i<=recDepth; i++)
// System.out.print(" ");
// System.out.println("finished: " + refinement + " [maxLength " + maxLength + "]");
Modified: trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java 2008-03-17 10:21:51 UTC (rev 714)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java 2008-03-19 08:11:19 UTC (rev 715)
@@ -79,6 +79,9 @@
private double gainBonusFactor;
private double nodeChildPenalty = 0.0001;
private double startNodeBonus = 1.0;
+ // penalise errors on positive examples harder than on negative examples
+ // (positive weight = 1)
+ private double negativeWeight = 0.8;
// examples
private int nrOfNegativeExamples;
@@ -113,11 +116,11 @@
}
public double getNodeScore(ExampleBasedNode node) {
- double accuracy = getAccuracy(node.getCoveredPositives().size(),node.getCoveredNegatives().size());
+ double accuracy = getWeightedAccuracy(node.getCoveredPositives().size(),node.getCoveredNegatives().size());
ExampleBasedNode parent = node.getParent();
double gain = 0;
if(parent != null) {
- double parentAccuracy = getAccuracy(parent.getCoveredPositives().size(),parent.getCoveredNegatives().size());
+ double parentAccuracy = getWeightedAccuracy(parent.getCoveredPositives().size(),parent.getCoveredNegatives().size());
gain = accuracy - parentAccuracy;
} else {
accuracy += startNodeBonus;
@@ -126,9 +129,8 @@
return accuracy + gainBonusFactor * gain - expansionPenaltyFactor * he - nodeChildPenalty * node.getChildren().size();
}
- private double getAccuracy(int coveredPositives, int coveredNegatives) {
- return (coveredPositives + nrOfNegativeExamples - coveredNegatives)/(double)nrOfExamples;
-
+ private double getWeightedAccuracy(int coveredPositives, int coveredNegatives) {
+ return (coveredPositives + negativeWeight * (nrOfNegativeExamples - coveredNegatives))/(double)nrOfExamples;
}
public static double getNodeScore(ExampleBasedNode node, int nrOfPositiveExamples, int nrOfNegativeExamples) {
Modified: trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java 2008-03-17 10:21:51 UTC (rev 714)
+++ trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java 2008-03-19 08:11:19 UTC (rev 715)
@@ -123,6 +123,9 @@
private static boolean learnCarcinogenic = true;
private static boolean useNewGroups = true;
+ private static boolean createPTE1Conf = false;
+ private static boolean createPTE2Conf = false;
+
/**
* @param args
* No arguments supported.
@@ -133,14 +136,13 @@
public static void main(String[] args) throws FileNotFoundException, IOException,
ParseException {
- // TODO: newgroups are not mapped currently
String[] files = new String[] { "newgroups.pl", "ames.pl", "atoms.pl", "bonds.pl", "gentoxprops.pl",
"ind_nos.pl", "ind_pos.pl"};
// "pte2/canc_nos.pl", "pte2/pte2ames.pl", "pte2/pte2atoms.pl",
// "pte2/pte2bonds.pl", "pte2/pte2gentox.pl", "pte2/pte2ind_nos.pl", "pte2/pte2newgroups.pl"
// "train.b" => not a pure Prolog file but Progol/Aleph specific
// };
- File owlFile = new File("examples/carcinogenesis/pte.owl");
+ File owlFile = new File("examples/carcinogenesis/carcinogenesis.owl");
Program program = null;
long startTime, duration;
@@ -281,7 +283,6 @@
// generating test examples for PTE-1
// => put all in one file, because they were used as training for PTE-2
File confPTE1File = new File("examples/carcinogenesis/testpte1.conf");
- Files.clearFile(confPTE1File);
File testPTE1Positives = new File(prologDirectory + "pte1.f");
File testPTE1Negatives = new File(prologDirectory + "pte1.n");
@@ -289,16 +290,20 @@
List<Individual> negPTE1Examples = getExamples(testPTE1Negatives);
appendPosExamples(confTrainFile, posPTE1Examples);
appendNegExamples(confTrainFile, negPTE1Examples);
- Files.clearFile(confPTE1File);
- Files.appendFile(confPTE1File, "import(\"pte.owl\");\nreasoner=fastInstanceChecker;\n\n");
- appendPosExamples(confPTE1File, posPTE1Examples);
- appendNegExamples(confPTE1File, negPTE1Examples);
+ if(createPTE1Conf) {
+ Files.clearFile(confPTE1File);
+ Files.appendFile(confPTE1File, "import(\"pte.owl\");\nreasoner=fastInstanceChecker;\n\n");
+ appendPosExamples(confPTE1File, posPTE1Examples);
+ appendNegExamples(confPTE1File, negPTE1Examples);
+ }
// create a PTE-2 test file
- File confPTE2File = new File("examples/carcinogenesis/testpte2.conf");
- Files.clearFile(confPTE2File);
- Files.appendFile(confPTE2File, "import(\"pte.owl\");\nreasoner=fastInstanceChecker;\n\n");
- Files.appendFile(confPTE2File, getPTE2Examples());
+ if(createPTE2Conf) {
+ File confPTE2File = new File("examples/carcinogenesis/testpte2.conf");
+ Files.clearFile(confPTE2File);
+ Files.appendFile(confPTE2File, "import(\"pte.owl\");\nreasoner=fastInstanceChecker;\n\n");
+ Files.appendFile(confPTE2File, getPTE2Examples());
+ }
}
Modified: trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java 2008-03-17 10:21:51 UTC (rev 714)
+++ trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java 2008-03-19 08:11:19 UTC (rev 715)
@@ -325,10 +325,10 @@
return true;
// earyl abort: e.g. >= 10 hasStructure.Methyl;
// if there are 11 fillers and 2 are not Methyl, the result is false
- } /* else {
+ } else {
if(roleFillers.size() - index < number)
return false;
- }*/
+ }
}
return false;
} else if (description instanceof ObjectMaxCardinalityRestriction) {
@@ -363,10 +363,10 @@
return false;
// earyl abort: e.g. <= 5 hasStructure.Methyl;
// if there are 6 fillers and 2 are not Methyl, the result is true
- } /* else {
+ } else {
if(roleFillers.size() - index <= number)
return true;
- } */
+ }
}
return true;
} else if (description instanceof BooleanValueRestriction) {
Modified: trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java 2008-03-17 10:21:51 UTC (rev 714)
+++ trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java 2008-03-19 08:11:19 UTC (rev 715)
@@ -92,6 +92,10 @@
// maximum number of fillers for eeach role
private Map<ObjectProperty,Integer> maxNrOfFillers = new TreeMap<ObjectProperty,Integer>();
+ // limit for cardinality restrictions (this makes sense if we e.g. have compounds with up to
+ // more than 200 atoms but we are only interested in atoms with certain characteristics and do
+ // not want something like e.g. >= 204 hasAtom.NOT Carbon-87; which blows up the search space
+ private int cardinalityLimit = 5;
// start concept (can be used to start from an arbitrary concept, needs
// to be Thing or NamedClass), note that when you use e.g. Compound as
@@ -105,7 +109,7 @@
private int topRefinementsLength = 0;
private Map<NamedClass, Integer> topARefinementsLength = new TreeMap<NamedClass, Integer>();
// M is finite and this value is the maximum length of any value in M
- private static int mMaxLength = 3;
+ private static int mMaxLength = 4;
// the sets M_\top and M_A
private Map<Integer,SortedSet<Description>> m = new TreeMap<Integer,SortedSet<Description>>();
@@ -194,15 +198,22 @@
}
// determine the maximum number of fillers for each role
+ // (up to a specified cardinality maximum)
+ if(useCardinalityRestrictions) {
for(ObjectProperty op : rs.getAtomicRoles()) {
int maxFillers = 0;
Map<Individual,SortedSet<Individual>> opMembers = rs.getRoleMembers(op);
for(SortedSet<Individual> inds : opMembers.values()) {
if(inds.size()>maxFillers)
maxFillers = inds.size();
+ if(maxFillers >= cardinalityLimit) {
+ maxFillers = cardinalityLimit;
+ break;
+ }
}
maxNrOfFillers.put(op, maxFillers);
}
+ }
/*
String conceptStr = "(\"http://dl-learner.org/carcinogenesis#Compound\" AND (>= 2 \"http://dl-learner.org/carcinogenesis#hasStructure\".\"http://dl-learner.org/carcinogenesis#Ar_halide\" OR ((\"http://dl-learner.org/carcinogenesis#amesTestPositive\" IS TRUE) AND >= 5 \"http://dl-learner.org/carcinogenesis#hasBond\". TOP)))";
@@ -412,23 +423,41 @@
// rule 4: ALL r.D => <= (maxFillers-1) r.D
// (length increases by 1 so we have to check whether max length is sufficient)
- if(useCardinalityRestrictions) {
- if(maxLength > description.getLength() && maxNrOfFillers.get(ar)>1) {
- ObjectMaxCardinalityRestriction max = new ObjectMaxCardinalityRestriction(maxNrOfFillers.get(ar)-1,role,description.getChild(0));
- refinements.add(max);
- }
- }
+ // => commented out because this is acutally not a downward refinement
+// if(useCardinalityRestrictions) {
+// if(maxLength > description.getLength() && maxNrOfFillers.get(ar)>1) {
+// ObjectMaxCardinalityRestriction max = new ObjectMaxCardinalityRestriction(maxNrOfFillers.get(ar)-1,role,description.getChild(0));
+// refinements.add(max);
+// }
+// }
} else if (description instanceof ObjectCardinalityRestriction) {
+ ObjectPropertyExpression role = ((ObjectCardinalityRestriction)description).getRole();
+ Description range = opRanges.get(role);
+ int number = ((ObjectCardinalityRestriction)description).getCardinality();
if(description instanceof ObjectMaxCardinalityRestriction) {
- // <= x r.C => <= (x-1) r.C
+ // rule 1: <= x r.C => <= x r.D
+ tmp = refine(description.getChild(0), maxLength-3, null, range);
+
+ for(Description d : tmp) {
+ refinements.add(new ObjectMaxCardinalityRestriction(number,role,d));
+ }
+
+ // rule 2: <= x r.C => <= (x-1) r.C
ObjectMaxCardinalityRestriction max = (ObjectMaxCardinalityRestriction) description;
- int number = max.getNumber();
- if(number > 0)
+// int number = max.getNumber();
+ if(number > 1)
refinements.add(new ObjectMaxCardinalityRestriction(number-1,max.getRole(),max.getChild(0)));
+
} else if(description instanceof ObjectMinCardinalityRestriction) {
+ tmp = refine(description.getChild(0), maxLength-3, null, range);
+
+ for(Description d : tmp) {
+ refinements.add(new ObjectMinCardinalityRestriction(number,role,d));
+ }
+
// >= x r.C => >= (x+1) r.C
ObjectMinCardinalityRestriction min = (ObjectMinCardinalityRestriction) description;
- int number = min.getNumber();
+// int number = min.getNumber();
if(number < maxNrOfFillers.get(min.getRole()))
refinements.add(new ObjectMinCardinalityRestriction(number+1,min.getRole(),min.getChild(0)));
}
@@ -723,7 +752,7 @@
long mComputationTimeStartNs = System.nanoTime();
// initialise all possible lengths (1 to 3)
- for(int i=1; i<=3; i++) {
+ for(int i=1; i<=mMaxLength; i++) {
m.put(i, new TreeSet<Description>(conceptComparator));
}
@@ -777,6 +806,15 @@
m.put(3,m3);
+ SortedSet<Description> m4 = new TreeSet<Description>(conceptComparator);
+ if(useCardinalityRestrictions) {
+ for(ObjectProperty r : rs.getMostGeneralRoles()) {
+ int maxFillers = maxNrOfFillers.get(r);
+ m4.add(new ObjectMaxCardinalityRestriction(maxFillers-1, r, new Thing()));
+ }
+ }
+ m.put(4,m4);
+
mComputationTimeNs += System.nanoTime() - mComputationTimeStartNs;
}
@@ -866,6 +904,15 @@
mA.get(nc).put(3,m3);
+ SortedSet<Description> m4 = new TreeSet<Description>(conceptComparator);
+ if(useCardinalityRestrictions) {
+ for(ObjectProperty r : mgr.get(nc)) {
+ int maxFillers = maxNrOfFillers.get(r);
+ m4.add(new ObjectMaxCardinalityRestriction(maxFillers-1, r, new Thing()));
+ }
+ }
+ mA.get(nc).put(4,m4);
+
mComputationTimeNs += System.nanoTime() - mComputationTimeStartNs;
}
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <lor...@us...> - 2008-03-17 10:22:07
|
Revision: 714
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=714&view=rev
Author: lorenz_b
Date: 2008-03-17 03:21:51 -0700 (Mon, 17 Mar 2008)
Log Message:
-----------
First Steps
Select KnowledgeSource
Select Concept
Auto-Select pos/neg-Examples
Start Learning-Algorithm
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
Added Paths:
-----------
trunk/src/dl-learner/org/dllearner/tools/ore/Enrichment.java
trunk/src/dl-learner/org/dllearner/tools/ore/Repair.java
Added: trunk/src/dl-learner/org/dllearner/tools/ore/Enrichment.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/Enrichment.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/Enrichment.java 2008-03-17 10:21:51 UTC (rev 714)
@@ -0,0 +1,5 @@
+package org.dllearner.tools.ore;
+
+public class Enrichment {
+
+}
Modified: trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java 2008-03-16 19:03:46 UTC (rev 713)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java 2008-03-17 10:21:51 UTC (rev 714)
@@ -19,12 +19,591 @@
*/
package org.dllearner.tools.ore;
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.IOException;
+import java.io.InputStreamReader;
+import java.net.MalformedURLException;
+import java.net.URL;
+import java.util.HashMap;
+import java.util.HashSet;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+import java.util.SortedSet;
+import java.util.TreeSet;
+
+import org.apache.log4j.ConsoleAppender;
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
+import org.apache.log4j.SimpleLayout;
+import org.dllearner.algorithms.BruteForceLearner;
+import org.dllearner.algorithms.RandomGuesser;
+import org.dllearner.algorithms.gp.GP;
+import org.dllearner.algorithms.refexamples.ExampleBasedROLComponent;
+import org.dllearner.algorithms.refinement.ROLearner;
+import org.dllearner.cli.ConfFileOption;
+import org.dllearner.core.Component;
+import org.dllearner.core.ComponentInitException;
+import org.dllearner.core.ComponentManager;
+import org.dllearner.core.KnowledgeSource;
+import org.dllearner.core.LearningAlgorithm;
+import org.dllearner.core.ReasonerComponent;
+import org.dllearner.core.ReasoningService;
+import org.dllearner.core.config.BooleanConfigOption;
+import org.dllearner.core.config.ConfigEntry;
+import org.dllearner.core.config.ConfigOption;
+import org.dllearner.core.config.DoubleConfigOption;
+import org.dllearner.core.config.IntegerConfigOption;
+import org.dllearner.core.config.InvalidConfigOptionValueException;
+import org.dllearner.core.config.StringConfigOption;
+import org.dllearner.core.config.StringSetConfigOption;
+import org.dllearner.core.config.StringTupleListConfigOption;
+import org.dllearner.core.owl.Description;
+import org.dllearner.core.owl.Individual;
+import org.dllearner.core.owl.NamedClass;
+import org.dllearner.kb.KBFile;
+import org.dllearner.kb.OWLFile;
+import org.dllearner.kb.sparql.SparqlKnowledgeSource;
+import org.dllearner.learningproblems.PosNegDefinitionLP;
+import org.dllearner.parser.ConfParser;
+import org.dllearner.parser.KBParser;
+import org.dllearner.parser.ParseException;
+import org.dllearner.parser.TokenMgrError;
+import org.dllearner.reasoning.DIGReasoner;
+import org.dllearner.reasoning.FastInstanceChecker;
+import org.dllearner.reasoning.FastRetrievalReasoner;
+import org.dllearner.reasoning.OWLAPIReasoner;
+import org.dllearner.utilities.ConceptComparator;
+import org.dllearner.utilities.Datastructures;
+import org.dllearner.utilities.Helper;
+import org.dllearner.utilities.StringTuple;
+
/**
* Start class for the ontology repair and enrichment tool.
*
- * @author Lorenz Bühmann.
+ * @author Lorenz Buehmann.
*
*/
public class ORE {
+ private static Logger logger = Logger.getRootLogger();
+
+ private static LearningAlgorithm la;
+ private ReasoningService rs;
+
+ /**
+ * Entry point for CLI interface.
+ *
+ * @param args
+ */
+ public static void main(String[] args) throws ComponentInitException {
+
+ File file = new File(args[args.length - 1]);
+
+ // create logger (a simple logger which outputs
+ // its messages to the console)
+ SimpleLayout layout = new SimpleLayout();
+ ConsoleAppender consoleAppender = new ConsoleAppender(layout);
+ logger.removeAllAppenders();
+ logger.addAppender(consoleAppender);
+ logger.setLevel(Level.DEBUG);
+
+ ORE ore = null;
+ ore = new ORE(file);
+ ore.start();
+ }
+
+ /**
+ * Initialise all components based on conf file.
+ *
+ * @param file
+ * Conf file to read.
+ * @throws ComponentInitException
+ */
+ public ORE(File file) throws ComponentInitException {
+ String baseDir = file.getParentFile().getPath();
+
+ // create component manager instance
+ String message = "starting component manager ... ";
+ long cmStartTime = System.nanoTime();
+ ComponentManager cm = ComponentManager.getInstance();
+ long cmTime = System.nanoTime() - cmStartTime;
+ message += "OK (" + Helper.prettyPrintNanoSeconds(cmTime) + ")";
+ logger.info(message);
+
+ // create a mapping between components and prefixes in the conf file
+ Map<Class<? extends Component>, String> componentPrefixMapping = createComponentPrefixMapping();
+
+ // parse conf file
+ ConfParser parser = ConfParser.parseFile(file);
+
+ // step 1: detect knowledge sources
+ Set<KnowledgeSource> sources = new HashSet<KnowledgeSource>();
+ Map<URL, Class<? extends KnowledgeSource>> importedFiles = getImportedFiles(
+ parser, baseDir);
+ for (Map.Entry<URL, Class<? extends KnowledgeSource>> entry : importedFiles
+ .entrySet()) {
+ KnowledgeSource ks = cm.knowledgeSource(entry.getValue());
+ // apply URL entry (this assumes that every knowledge source has a
+ // configuration option "url"), so this may need to be changed in
+ // the
+ // future
+ cm.applyConfigEntry(ks, "url", entry.getKey().toString());
+
+ sources.add(ks);
+ configureComponent(cm, ks, componentPrefixMapping, parser);
+ initComponent(cm, ks);
+ }
+
+ // step 2: detect used reasoner
+ ConfFileOption reasonerOption = parser.getConfOptionsByName("reasoner");
+ ReasonerComponent reasoner = cm.reasoner(
+ getReasonerClass(reasonerOption), sources);
+ configureComponent(cm, reasoner, componentPrefixMapping, parser);
+ initComponent(cm, reasoner);
+ rs = cm.reasoningService(reasoner);
+
+ }
+
+ public void start() {
+ processOREMode(rs);
+
+ }
+
+ /**
+ * creates a mapping from components to option prefix strings
+ */
+ public static Map<Class<? extends Component>, String> createComponentPrefixMapping() {
+ Map<Class<? extends Component>, String> componentPrefixMapping = new HashMap<Class<? extends Component>, String>();
+ // knowledge sources
+ componentPrefixMapping.put(SparqlKnowledgeSource.class, "sparql");
+ // reasoners
+ componentPrefixMapping.put(DIGReasoner.class, "digReasoner");
+ componentPrefixMapping.put(OWLAPIReasoner.class, "owlAPIReasoner");
+ // learning problems - configured via + and - flags for examples
+ componentPrefixMapping.put(PosNegDefinitionLP.class,
+ "posNegDefinitionLP");
+ // learning algorithms
+ componentPrefixMapping.put(ROLearner.class, "refinement");
+ componentPrefixMapping.put(ExampleBasedROLComponent.class,
+ "refexamples");
+ componentPrefixMapping.put(GP.class, "gp");
+ return componentPrefixMapping;
+ }
+
+ /**
+ * convenience method basically every prefix (e.g. "refinement" in
+ * "refinement.horizontalExpFactor) corresponds to a specific component -
+ * this way the CLI will automatically support any configuration options
+ * supported by the component
+ */
+ public static void configureComponent(ComponentManager cm,
+ Component component,
+ Map<Class<? extends Component>, String> componentPrefixMapping,
+ ConfParser parser) {
+ String prefix = componentPrefixMapping.get(component.getClass());
+ if (prefix != null)
+ configureComponent(cm, component, parser
+ .getConfOptionsByPrefix(prefix));
+ }
+
+ // convenience method - see above method
+ private static void configureComponent(ComponentManager cm,
+ Component component, List<ConfFileOption> options) {
+ if (options != null)
+ for (ConfFileOption option : options)
+ applyConfFileOption(cm, component, option);
+ }
+
+ // applies an option to a component - checks whether the option and its
+ // value is valid
+ private static void applyConfFileOption(ComponentManager cm,
+ Component component, ConfFileOption option) {
+ // the name of the option is suboption-part (the first part refers
+ // to its component)
+ String optionName = option.getSubOption();
+
+ ConfigOption<?> configOption = cm.getConfigOption(component.getClass(),
+ optionName);
+ // check whether such an option exists
+ if (configOption != null) {
+
+ // catch all invalid config options
+ try {
+
+ // perform compatibility checks
+ if (configOption instanceof StringConfigOption
+ && option.isStringOption()) {
+
+ ConfigEntry<String> entry = new ConfigEntry<String>(
+ (StringConfigOption) configOption, option
+ .getStringValue());
+ cm.applyConfigEntry(component, entry);
+
+ } else if (configOption instanceof IntegerConfigOption
+ && option.isIntegerOption()) {
+
+ ConfigEntry<Integer> entry = new ConfigEntry<Integer>(
+ (IntegerConfigOption) configOption, option
+ .getIntValue());
+ cm.applyConfigEntry(component, entry);
+
+ } else if (configOption instanceof DoubleConfigOption
+ && (option.isIntegerOption() || option.isDoubleOption())) {
+
+ double value;
+ if (option.isIntegerOption())
+ value = option.getIntValue();
+ else
+ value = option.getDoubleValue();
+
+ ConfigEntry<Double> entry = new ConfigEntry<Double>(
+ (DoubleConfigOption) configOption, value);
+ cm.applyConfigEntry(component, entry);
+
+ } else if (configOption instanceof BooleanConfigOption
+ && option.isStringOption()) {
+
+ ConfigEntry<Boolean> entry = new ConfigEntry<Boolean>(
+ (BooleanConfigOption) configOption, Datastructures
+ .strToBool(option.getStringValue()));
+ cm.applyConfigEntry(component, entry);
+
+ } else if (configOption instanceof StringSetConfigOption
+ && option.isSetOption()) {
+
+ ConfigEntry<Set<String>> entry = new ConfigEntry<Set<String>>(
+ (StringSetConfigOption) configOption, option
+ .getSetValues());
+ cm.applyConfigEntry(component, entry);
+
+ } else if (configOption instanceof StringTupleListConfigOption
+ && option.isListOption()) {
+
+ ConfigEntry<List<StringTuple>> entry = new ConfigEntry<List<StringTuple>>(
+ (StringTupleListConfigOption) configOption, option
+ .getListTuples());
+ cm.applyConfigEntry(component, entry);
+
+ } else {
+ handleError("The type of conf file entry \""
+ + option.getFullName()
+ + "\" is not correct: value \"" + option.getValue()
+ + "\" not valid for option type \""
+ + configOption.getClass().getName() + "\".");
+ }
+
+ } catch (InvalidConfigOptionValueException e) {
+ e.printStackTrace();
+ System.exit(0);
+ }
+
+ } else
+ handleError("Unknow option " + option + ".");
+ }
+
+ /**
+ * detects all imported files and their format
+ */
+ public static Map<URL, Class<? extends KnowledgeSource>> getImportedFiles(
+ ConfParser parser, String baseDir) {
+ List<List<String>> imports = parser.getFunctionCalls().get("import");
+ Map<URL, Class<? extends KnowledgeSource>> importedFiles = new HashMap<URL, Class<? extends KnowledgeSource>>();
+
+ if (imports != null) {
+ for (List<String> arguments : imports) {
+ // step 1: detect URL
+ URL url = null;
+ try {
+ String fileString = arguments.get(0);
+ if (fileString.startsWith("http:")) {
+ url = new URL(fileString);
+ } else {
+ File f = new File(baseDir, arguments.get(0));
+ url = f.toURI().toURL();
+ }
+ } catch (MalformedURLException e) {
+ e.printStackTrace();
+ }
+
+ // step 2: detect format
+ Class<? extends KnowledgeSource> ksClass;
+ if (arguments.size() == 1) {
+ String filename = url.getPath();
+ String ending = filename.substring(filename
+ .lastIndexOf(".") + 1);
+
+ if (ending.equals("rdf") || ending.equals("owl"))
+ ksClass = OWLFile.class;
+ else if (ending.equals("nt"))
+ ksClass = OWLFile.class;
+ else if (ending.equals("kb"))
+ ksClass = KBFile.class;
+ else {
+ System.err.println("Warning: no format given for "
+ + arguments.get(0)
+ + " and could not detect it. Chosing RDF/XML.");
+ ksClass = OWLFile.class;
+ }
+
+ importedFiles.put(url, ksClass);
+ } else {
+ String formatString = arguments.get(1);
+
+ if (formatString.equals("RDF/XML"))
+ ksClass = OWLFile.class;
+ else if (formatString.equals("KB"))
+ ksClass = KBFile.class;
+ else if (formatString.equals("SPARQL"))
+ ksClass = SparqlKnowledgeSource.class;
+ else if (formatString.equals("NT"))
+ ksClass = OWLFile.class;
+ else {
+ throw new RuntimeException(
+ "Unsupported knowledge source format "
+ + formatString + ". Exiting.");
+ }
+
+ importedFiles.put(url, ksClass);
+ }
+ }
+ }
+
+ return importedFiles;
+ }
+
+ private static void initComponent(ComponentManager cm, Component component)
+ throws ComponentInitException {
+ String startMessage = "initialising component \""
+ + cm.getComponentName(component.getClass()) + "\" ... ";
+ long initStartTime = System.nanoTime();
+ component.init();
+ // standard messsage is just "OK" but can be more detailed for certain
+ // components
+ String message = "OK";
+ if (component instanceof KBFile)
+ message = ((KBFile) component).getURL().toString() + " read";
+ else if (component instanceof DIGReasoner) {
+ DIGReasoner reasoner = (DIGReasoner) component;
+ message = "using " + reasoner.getIdentifier()
+ + " connected via DIG 1.1 at "
+ + reasoner.getReasonerURL().toString();
+ }
+
+ long initTime = System.nanoTime() - initStartTime;
+ logger.info(startMessage + message + " ("
+ + Helper.prettyPrintNanoSeconds(initTime, false, false) + ")");
+ }
+
+ private static void processOREMode(ReasoningService rs) {
+ System.err.println("Concepts :" + rs.getAtomicConcepts());
+
+ System.out.println("Individuals " + rs.getIndividuals());
+ System.out
+ .println("Entering ORE mode. Enter a existing concept for learning(new) or q to quit");
+
+ String conceptStr = "";
+ do {
+ //Step 1: choose existing concept which should be (new) learned
+ System.out.print("enter concept: ");
+ // read input string
+ BufferedReader input = new BufferedReader(new InputStreamReader(
+ System.in));
+
+ try {
+ conceptStr = input.readLine();
+ } catch (IOException e) {
+ e.printStackTrace();
+ }
+
+ if (!conceptStr.equals("q")) {
+
+ // parse concept
+ Description concept = null;
+ boolean parsedCorrectly = true;
+
+ try {
+ concept = KBParser.parseConcept(conceptStr);
+
+ } catch (ParseException e1) {
+ e1.printStackTrace();
+ System.err
+ .println("The concept you entered could not be parsed. Please try again.");
+ parsedCorrectly = false;
+ } catch (TokenMgrError e) {
+ e.printStackTrace();
+ System.err
+ .println("An error occured during parsing. Please enter a syntactically valid concept.");
+ parsedCorrectly = false;
+ }
+
+ if (parsedCorrectly) {
+
+ // compute atomic concepts used in concept
+ SortedSet<NamedClass> occurringConcepts = new TreeSet<NamedClass>(
+ new ConceptComparator());
+ occurringConcepts.addAll(Helper.getAtomicConcepts(concept));
+
+ // substract existing concepts from detected
+ // concepts -> the resulting set should be
+ // empty, otherwise print a warning (the DIG reasoner
+ // will just treat them as concepts about which it
+ // has no knowledge - this makes it hard to
+ // detect typos
+ // (note that removeAll currently gives a different
+ // result here, because the comparator of the argument
+ // is used)
+ for (NamedClass ac : rs.getAtomicConcepts())
+ occurringConcepts.remove(ac);
+
+ boolean nonExistingConstructs = false;
+ if (occurringConcepts.size() != 0) {
+ System.out
+ .println("You used non-existing atomic concepts or roles. Please correct your query.");
+ if (occurringConcepts.size() > 0)
+
+ System.out.println("non-existing concepts: "
+ + occurringConcepts);
+
+ nonExistingConstructs = true;
+ }
+
+ if (!nonExistingConstructs) {
+
+ // Step 2_1: choose all individuals of the concept as positive examples
+ SortedSet<Individual> posExamples = null;
+ posExamples = rs.retrieval(concept);
+ posExamples.removeAll(posExamples);
+ posExamples.add(new Individual(
+ "http://example.com/father#stefan"));
+ posExamples.add(new Individual(
+ "http://example.com/father#markus"));
+ posExamples.add(new Individual(
+ "http://example.com/father#martin"));
+
+ //Step 2_2: subtract positive examples from all individuals of the ontology
+ //->negative examples of the concepts
+ SortedSet<Individual> negExamples = null;
+ negExamples = rs.getIndividuals();
+ for (Individual rem_pos : posExamples)
+ negExamples.remove(rem_pos);
+ System.out.println("+" + posExamples);
+ System.out.println("-" + negExamples);
+
+ //Step 3: Start learning-algorithm
+
+ // step 3_1: set learning problem
+ ComponentManager cm = ComponentManager.getInstance();
+
+ PosNegDefinitionLP lp = new PosNegDefinitionLP(rs,
+ posExamples, negExamples);
+
+ try {
+ initComponent(cm, lp);
+ } catch (ComponentInitException e1) {
+ // TODO Auto-generated catch block
+ e1.printStackTrace();
+ }
+
+ // step 3_2: set learning algorithm
+
+ la = new ROLearner(lp, rs);
+
+ try {
+ initComponent(cm, la);
+ } catch (ComponentInitException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
+
+ Thread laThread = new Thread()
+ {
+ public void run(){
+ la.start();
+ }
+ };
+ laThread.start();
+
+
+ System.out.println(la.getBestSolutions(5));
+
+ //Step 4: Knowledge Engineer chooses one of the suggestions
+
+ //Step 5: Enrichment
+
+ //Step 6: Repair:-check which individuals cause inconsistency
+ // -problem solving
+
+ }
+ }
+ }
+
+ } while (!conceptStr.equals("q"));
+
+ }
+
+ /**
+ * error handling over the logger
+ *
+ * @param message
+ * is a string and you message for problem
+ */
+ public static void handleError(String message) {
+ logger.error(message);
+ System.exit(0);
+ }
+
+ public ReasoningService getReasoningService() {
+ return rs;
+ }
+
+ // edit by Tilo Hielscher
+
+ /**
+ * Set Reasoner class. Define here all possible reasoners.
+ *
+ * @param reasonerOption
+ * from config file
+ * @return reasonerClass reasoner class
+ */
+ public static Class<? extends ReasonerComponent> getReasonerClass(
+ ConfFileOption reasonerOption) {
+ Class<? extends ReasonerComponent> reasonerClass = null;
+ if (reasonerOption == null
+ || reasonerOption.getStringValue().equals("dig"))
+ reasonerClass = DIGReasoner.class;
+ else if (reasonerOption.getStringValue().equals("owlAPI"))
+ reasonerClass = OWLAPIReasoner.class;
+ else if (reasonerOption.getStringValue().equals("fastRetrieval"))
+ reasonerClass = FastRetrievalReasoner.class;
+ else if (reasonerOption.getStringValue().equals("fastInstanceChecker"))
+ reasonerClass = FastInstanceChecker.class;
+ else {
+ handleError("Unknown value " + reasonerOption.getStringValue()
+ + " for option \"reasoner\".");
+ }
+ return reasonerClass;
+ }
+
+ public static Class<? extends LearningAlgorithm> getLearningAlgorithm(
+ ConfFileOption algorithmOption) {
+ Class<? extends LearningAlgorithm> laClass = null;
+ if (algorithmOption == null
+ || algorithmOption.getStringValue().equals("refinement"))
+ laClass = ROLearner.class;
+ else if (algorithmOption.getStringValue().equals("refexamples"))
+ laClass = ExampleBasedROLComponent.class;
+ else if (algorithmOption.getStringValue().equals("gp"))
+ laClass = GP.class;
+ else if (algorithmOption.getStringValue().equals("bruteForce"))
+ laClass = BruteForceLearner.class;
+ else if (algorithmOption.getStringValue().equals("randomGuesser"))
+ laClass = RandomGuesser.class;
+ else
+ handleError("Unknown value in " + algorithmOption);
+
+ return laClass;
+ }
+
}
Added: trunk/src/dl-learner/org/dllearner/tools/ore/Repair.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/Repair.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/Repair.java 2008-03-17 10:21:51 UTC (rev 714)
@@ -0,0 +1,5 @@
+package org.dllearner.tools.ore;
+
+public class Repair {
+
+}
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jen...@us...> - 2008-03-16 19:03:58
|
Revision: 713
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=713&view=rev
Author: jenslehmann
Date: 2008-03-16 12:03:46 -0700 (Sun, 16 Mar 2008)
Log Message:
-----------
partial cardinality restriction learning support
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/Info.java
trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java
trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java
trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
trunk/src/dl-learner/org/dllearner/core/ComponentPool.java
trunk/src/dl-learner/org/dllearner/core/Reasoner.java
trunk/src/dl-learner/org/dllearner/core/ReasonerComponent.java
trunk/src/dl-learner/org/dllearner/core/ReasoningService.java
trunk/src/dl-learner/org/dllearner/core/owl/ObjectCardinalityRestriction.java
trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java
trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java
trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java
trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java
trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java
trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java
trunk/src/dl-learner/org/dllearner/utilities/ConceptComparator.java
trunk/src/dl-learner/org/dllearner/utilities/CrossValidation.java
Modified: trunk/src/dl-learner/org/dllearner/Info.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/Info.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/Info.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -3,6 +3,6 @@
package org.dllearner;
public class Info {
- public static final String build = "2008-02-18";
+ public static final String build = "2008-03-16";
}
\ No newline at end of file
Modified: trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -30,7 +30,6 @@
import java.util.SortedSet;
import java.util.TreeSet;
-import org.apache.log4j.Level;
import org.apache.log4j.Logger;
import org.dllearner.algorithms.refinement.RefinementOperator;
import org.dllearner.core.LearningProblem;
@@ -39,8 +38,8 @@
import org.dllearner.core.owl.Description;
import org.dllearner.core.owl.Individual;
import org.dllearner.core.owl.Intersection;
+import org.dllearner.core.owl.Thing;
import org.dllearner.core.owl.Union;
-import org.dllearner.core.owl.Thing;
import org.dllearner.learningproblems.PosNegLP;
import org.dllearner.learningproblems.PosOnlyDefinitionLP;
import org.dllearner.refinementoperators.RhoDRDown;
@@ -116,7 +115,7 @@
// the divide&conquer approach in many ILP programs using a
// clause by clause search; after a period of time the candidate
// set is reduced to focus CPU time on the most promising concepts
- private boolean useCandidateReduction = true;
+ private boolean useCandidateReduction = false;
private int candidatePostReductionSize = 30;
// setting to true gracefully stops the algorithm
@@ -214,6 +213,11 @@
posOnly = false;
nrOfPositiveExamples = lp.getPositiveExamples().size();
nrOfNegativeExamples = lp.getNegativeExamples().size();
+
+// System.out.println(nrOfPositiveExamples);
+// System.out.println(nrOfNegativeExamples);
+// System.exit(0);
+
} else if(learningProblem instanceof PosOnlyDefinitionLP) {
PosOnlyDefinitionLP lp = (PosOnlyDefinitionLP) learningProblem;
this.posOnlyLearningProblem = lp;
@@ -236,10 +240,40 @@
this.useShortConceptConstruction = useShortConceptConstruction;
baseURI = rs.getBaseURI();
- logger.setLevel(Level.DEBUG);
+// logger.setLevel(Level.DEBUG);
}
public void start() {
+ /*
+// String conceptStr = "(\"http://dl-learner.org/carcinogenesis#Compound\" AND (>= 2 \"http://dl-learner.org/carcinogenesis#hasStructure\".\"http://dl-learner.org/carcinogenesis#Ar_halide\" OR ((\"http://dl-learner.org/carcinogenesis#amesTestPositive\" IS TRUE) AND >= 5 \"http://dl-learner.org/carcinogenesis#hasBond\". TOP)))";
+ String conceptStr = "(\"http://dl-learner.org/carcinogenesis#Compound\" AND ((\"http://dl-learner.org/carcinogenesis#amesTestPositive\" IS TRUE) AND (\"http://dl-learner.org/carcinogenesis#amesTestPositive\" IS TRUE)))";
+ try {
+ NamedClass struc = new NamedClass("http://dl-learner.org/carcinogenesis#Compound");
+ Description d = KBParser.parseConcept(conceptStr);
+// SortedSet<Description> ds = (SortedSet<Description>) operator.refine(d,15,null,struc);
+// System.out.println(ds);
+
+ System.out.println(RhoDRDown.checkIntersection((Intersection)d));
+
+
+ Set<Individual> coveredNegatives = rs.instanceCheck(d, learningProblem.getNegativeExamples());
+ Set<Individual> coveredPositives = rs.instanceCheck(d, learningProblem.getPositiveExamples());
+ ExampleBasedNode ebn = new ExampleBasedNode(d);
+ ebn.setCoveredExamples(coveredPositives, coveredNegatives);
+ extendNodeProper(ebn,15);
+
+ // Individual i = new Individual("http://dl-learner.org/carcinogenesis#d101");
+// for(Individual i : learningProblem.getPositiveExamples())
+// rs.instanceCheck(ds.last(), i);
+
+ System.out.println("finished");
+ } catch (ParseException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
+ System.exit(0);
+ */
+
// calculate quality threshold required for a solution
allowedMisclassifications = (int) Math.round(noise * nrOfExamples);
@@ -290,8 +324,10 @@
if(useCandidateReduction && (currentTime - lastReductionTime > reductionInterval)) {
reduceCandidates();
lastReductionTime = System.nanoTime();
+// Logger.getRootLogger().setLevel(Level.TRACE);
}
+ System.out.println("next expanded: " + candidates.last().getShortDescription(nrOfPositiveExamples, nrOfNegativeExamples, baseURI));
// chose best node according to heuristics
bestNode = candidates.last();
// extend best node
@@ -304,7 +340,8 @@
// newCandidates has been filled during node expansion
candidates.addAll(newCandidates);
candidatesStable.addAll(newCandidates);
-
+// System.out.println("done");
+
if(writeSearchTree) {
// String treeString = "";
String treeString = "best node: " + bestNode+ "\n";
@@ -338,13 +375,13 @@
logger.info(" " + c + " (length " + c.getLength() +", depth " + c.getDepth() + ")");
}
}
- System.out.println("size of candidate set: " + candidates.size());
+ logger.debug("size of candidate set: " + candidates.size());
printStatistics(true);
if(stop)
- System.out.println("Algorithm stopped.");
+ logger.info("Algorithm stopped.");
else
- System.out.println("Algorithm terminated succesfully.");
+ logger.info("Algorithm terminated succesfully.");
}
// we apply the operator recursively until all proper refinements up
@@ -397,14 +434,18 @@
childConceptsDeletionTimeNs += System.nanoTime() - childConceptsDeletionTimeNsStart;
+// if(refinements.size()<30)
+// System.out.println("refinements: " + refinements);
+
long evaluateSetCreationTimeNsStart = System.nanoTime();
// alle Konzepte, die länger als horizontal expansion sind, müssen ausgewertet
// werden
- Set<Description> toEvaluateConcepts = new TreeSet<Description>(conceptComparator);
+ TreeSet<Description> toEvaluateConcepts = new TreeSet<Description>(conceptComparator);
Iterator<Description> it = refinements.iterator();
// for(Concept refinement : refinements) {
- while(it.hasNext()) {
+ while(it.hasNext()) {
+
Description refinement = it.next();
if(refinement.getLength()>node.getHorizontalExpansion()) {
// sagt aus, ob festgestellt wurde, ob refinement proper ist
@@ -413,7 +454,6 @@
// 1. short concept construction
if(useShortConceptConstruction) {
-
// kurzes Konzept konstruieren
Description shortConcept = ConceptTransformation.getShortConcept(refinement, conceptComparator);
int n = conceptComparator.compare(shortConcept, concept);
@@ -422,11 +462,14 @@
if(n==0) {
propernessTestsAvoidedByShortConceptConstruction++;
propernessDetected = true;
+
+ System.out.println("refinement " + refinement + " can be shortened");
+// System.exit(0);
}
}
// 2. too weak test
- if(!propernessDetected && useTooWeakList) {
+ if(!propernessDetected && useTooWeakList) {
if(refinement instanceof Intersection) {
boolean tooWeakElement = containsTooWeakElement((Intersection)refinement);
if(tooWeakElement) {
@@ -454,14 +497,28 @@
}
// properness konnte nicht vorher ermittelt werden
- if(!propernessDetected)
+ if(!propernessDetected) {
toEvaluateConcepts.add(refinement);
+// if(!res) {
+// System.out.println("already in: " + refinement);
+// Comparator comp = toEvaluateConcepts.comparator();
+// for(Description d : toEvaluateConcepts) {
+// if(comp.compare(d,refinement)==0)
+// System.out.println("see: " + d);
+// }
+// }
+ }
}
+
+// System.out.println("handled " + refinement + " length: " + refinement.getLength() + " (new size: " + toEvaluateConcepts.size() + ")");
+
}
evaluateSetCreationTimeNs += System.nanoTime() - evaluateSetCreationTimeNsStart;
+// System.out.println("intermediate 1");
+
// System.out.println(toEvaluateConcepts.size());
Set<Description> improperConcepts = null;
@@ -476,6 +533,11 @@
}
}
+// if(toEvaluateConcepts.size()<10)
+// System.out.println("to evaluate: " + toEvaluateConcepts);
+// else
+// System.out.println("to evaluate: more than 10");
+
long improperConceptsRemovalTimeNsStart = System.nanoTime();
// die improper Konzepte werden von den auszuwertenden gelöscht, d.h.
// alle proper concepts bleiben übrig (einfache Umbenennung)
@@ -486,6 +548,13 @@
refinements.removeAll(properConcepts);
improperConceptsRemovalTimeNs += System.nanoTime() - improperConceptsRemovalTimeNsStart;
+// if(refinements.size()<10)
+// System.out.println("refinements: " + refinements);
+// else
+// System.out.println("refinements: more than 10");
+//
+// System.out.println("improper concepts: " + improperConcepts);
+
for(Description refinement : properConcepts) {
long redundancyCheckTimeNsStart = System.nanoTime();
boolean nonRedundant = properRefinements.add(refinement);
@@ -603,18 +672,18 @@
}
}
-
// es sind jetzt noch alle Konzepte übrig, die improper refinements sind
// auf jedem dieser Konzepte wird die Funktion erneut aufgerufen, da sich
// proper refinements ergeben könnten
for(Description refinement : refinements) {
// for(int i=0; i<=recDepth; i++)
// System.out.print(" ");
- // System.out.println("call: " + refinement + " [maxLength " + maxLength + "]");
+// System.out.println("call: " + refinement + " [maxLength " + maxLength + "]");
extendNodeProper(node, refinement, maxLength, recDepth+1);
// for(int i=0; i<=recDepth; i++)
// System.out.print(" ");
- // System.out.println("finished: " + refinement + " [maxLength " + maxLength + "]");
+ // System.out.println("finished: " + refinement + " [maxLength " + maxLength + "]");
+// System.exit(0);
}
}
@@ -637,26 +706,25 @@
// + nrOfNegativeExamples - bestNode.getCoveredNegatives().size())/(double)nrOfExamples);
// Refinementoperator auf Konzept anwenden
// String bestNodeString = "currently best node: " + bestNode + " accuracy: " + df.format(accuracy) + "%";
- System.out.println("start node: " + startNode.getShortDescription(nrOfPositiveExamples, nrOfNegativeExamples, baseURI));
+ logger.debug("start node: " + startNode.getShortDescription(nrOfPositiveExamples, nrOfNegativeExamples, baseURI));
String bestNodeString = "currently best node: " + bestNode.getShortDescription(nrOfPositiveExamples, nrOfNegativeExamples, baseURI);
// searchTree += bestNodeString + "\n";
- System.out.println(bestNodeString);
+ logger.debug(bestNodeString);
String expandedNodeString = "next expanded node: " + candidates.last().getShortDescription(nrOfPositiveExamples, nrOfNegativeExamples, baseURI);
// searchTree += expandedNodeString + "\n";
- System.out.println(expandedNodeString);
- System.out.println("algorithm runtime " + Helper.prettyPrintNanoSeconds(algorithmRuntime));
- System.out.println("size of candidate set: " + candidates.size());
+ logger.debug(expandedNodeString);
+ logger.debug("algorithm runtime " + Helper.prettyPrintNanoSeconds(algorithmRuntime));
+ logger.debug("size of candidate set: " + candidates.size());
// System.out.println("properness max recursion depth: " + maxRecDepth);
// System.out.println("max. number of one-step refinements: " + maxNrOfRefinements);
// System.out.println("max. number of children of a node: " + maxNrOfChildren);
- System.out.println("subsumption time: " + Helper.prettyPrintNanoSeconds(rs.getSubsumptionReasoningTimeNs()));
- System.out.println("instance check time: " + Helper.prettyPrintNanoSeconds(rs.getInstanceCheckReasoningTimeNs()));
- System.out.println("retrieval time: " + Helper.prettyPrintNanoSeconds(rs.getRetrievalReasoningTimeNs()));
+ logger.debug("subsumption time: " + Helper.prettyPrintNanoSeconds(rs.getSubsumptionReasoningTimeNs()));
+ logger.debug("instance check time: " + Helper.prettyPrintNanoSeconds(rs.getInstanceCheckReasoningTimeNs()));
+ logger.debug("retrieval time: " + Helper.prettyPrintNanoSeconds(rs.getRetrievalReasoningTimeNs()));
}
if(computeBenchmarkInformation) {
-
long reasoningTime = rs.getOverallReasoningTimeNs();
double reasoningPercentage = 100 * reasoningTime/(double)algorithmRuntime;
long propWithoutReasoning = propernessCalcTimeNs-propernessCalcReasoningTimeNs;
@@ -674,24 +742,24 @@
double onnfTimePercentage = 100 * ConceptTransformation.onnfTimeNs/(double)algorithmRuntime;
double shorteningTimePercentage = 100 * ConceptTransformation.shorteningTimeNs/(double)algorithmRuntime;
- System.out.println("reasoning percentage: " + df.format(reasoningPercentage) + "%");
- System.out.println(" subsumption check time: " + df.format(subPercentage) + "%");
- System.out.println("proper calculation percentage (wo. reasoning): " + df.format(propPercentage) + "%");
- System.out.println(" deletion time percentage: " + df.format(deletionPercentage) + "%");
- System.out.println(" refinement calculation percentage: " + df.format(refinementPercentage) + "%");
- System.out.println(" m calculation percentage: " + df.format(mComputationTimePercentage) + "%");
- System.out.println(" top calculation percentage: " + df.format(topComputationTimePercentage) + "%");
- System.out.println(" redundancy check percentage: " + df.format(redundancyCheckPercentage) + "%");
- System.out.println(" evaluate set creation time percentage: " + df.format(evaluateSetCreationTimePercentage) + "%");
- System.out.println(" improper concepts removal time percentage: " + df.format(improperConceptsRemovalTimePercentage) + "%");
- System.out.println("clean time percentage: " + df.format(cleanTimePercentage) + "%");
- System.out.println("onnf time percentage: " + df.format(onnfTimePercentage) + "%");
- System.out.println("shortening time percentage: " + df.format(shorteningTimePercentage) + "%");
+ logger.debug("reasoning percentage: " + df.format(reasoningPercentage) + "%");
+ logger.debug(" subsumption check time: " + df.format(subPercentage) + "%");
+ logger.debug("proper calculation percentage (wo. reasoning): " + df.format(propPercentage) + "%");
+ logger.debug(" deletion time percentage: " + df.format(deletionPercentage) + "%");
+ logger.debug(" refinement calculation percentage: " + df.format(refinementPercentage) + "%");
+ logger.debug(" m calculation percentage: " + df.format(mComputationTimePercentage) + "%");
+ logger.debug(" top calculation percentage: " + df.format(topComputationTimePercentage) + "%");
+ logger.debug(" redundancy check percentage: " + df.format(redundancyCheckPercentage) + "%");
+ logger.debug(" evaluate set creation time percentage: " + df.format(evaluateSetCreationTimePercentage) + "%");
+ logger.debug(" improper concepts removal time percentage: " + df.format(improperConceptsRemovalTimePercentage) + "%");
+ logger.debug("clean time percentage: " + df.format(cleanTimePercentage) + "%");
+ logger.debug("onnf time percentage: " + df.format(onnfTimePercentage) + "%");
+ logger.debug("shortening time percentage: " + df.format(shorteningTimePercentage) + "%");
}
- System.out.println("properness tests (reasoner/short concept/too weak list): " + propernessTestsReasoner + "/" + propernessTestsAvoidedByShortConceptConstruction
+ logger.debug("properness tests (reasoner/short concept/too weak list): " + propernessTestsReasoner + "/" + propernessTestsAvoidedByShortConceptConstruction
+ "/" + propernessTestsAvoidedByTooWeakList);
- System.out.println("concept tests (reasoner/too weak list/overly general list/redundant concepts): " + conceptTestsReasoner + "/"
+ logger.debug("concept tests (reasoner/too weak list/overly general list/redundant concepts): " + conceptTestsReasoner + "/"
+ conceptTestsTooWeakList + "/" + conceptTestsOverlyGeneralList + "/" + redundantConcepts);
}
@@ -737,8 +805,8 @@
Set<Individual> currentCoveredNeg = startNode.getCoveredNegatives();
double currentAccuracy = startNode.getAccuracy(nrOfPositiveExamples, nrOfNegativeExamples);
int currentMisclassifications = nrOfPositiveExamples - currentCoveredPos.size() + currentCoveredNeg.size();
- System.out.println("tree traversal start node " + startNode.getShortDescription(nrOfPositiveExamples, nrOfNegativeExamples, baseURI));
- System.out.println("tree traversal start accuracy: " + currentAccuracy);
+ logger.debug("tree traversal start node " + startNode.getShortDescription(nrOfPositiveExamples, nrOfNegativeExamples, baseURI));
+ logger.debug("tree traversal start accuracy: " + currentAccuracy);
int i=0;
// start from the most promising nodes
NavigableSet<ExampleBasedNode> reverseView = candidatesStable.descendingSet();
@@ -775,9 +843,9 @@
ConceptTransformation.transformToOrderedNegationNormalFormNonRecursive(mc, conceptComparator);
// System.out.println("extended concept to: " + mc);
- System.out.println("misclassifications: " + misclassifications);
- System.out.println("misclassified positives: " + misclassifiedPositives);
- System.out.println("accuracy: " + accuracy);
+ logger.debug("misclassifications: " + misclassifications);
+ logger.debug("misclassified positives: " + misclassifiedPositives);
+ logger.debug("accuracy: " + accuracy);
// update variables
currentDescription = mc;
@@ -787,8 +855,8 @@
currentAccuracy = accuracy;
if(accuracy > 1 - noise) {
- System.out.println("traversal found " + mc);
- System.out.println("accuracy: " + accuracy);
+ logger.info("traversal found " + mc);
+ logger.info("accuracy: " + accuracy);
System.exit(0);
}
}
@@ -844,9 +912,9 @@
i++;
}
candidates.retainAll(promisingNodes);
- System.out.println("searched " + i + " nodes and picked the following promising descriptions:");
+ logger.debug("searched " + i + " nodes and picked the following promising descriptions:");
for(ExampleBasedNode node : promisingNodes)
- System.out.println(node.getShortDescription(nrOfPositiveExamples, nrOfNegativeExamples, baseURI));
+ logger.debug(node.getShortDescription(nrOfPositiveExamples, nrOfNegativeExamples, baseURI));
}
/*
Modified: trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -21,7 +21,6 @@
import java.util.List;
-import org.dllearner.core.owl.BooleanValueRestriction;
import org.dllearner.core.owl.DatatypeSomeRestriction;
import org.dllearner.core.owl.Description;
import org.dllearner.core.owl.Thing;
@@ -145,10 +144,10 @@
// do not count TOP symbols (in particular in ALL r.TOP and EXISTS r.TOP)
// as they provide no extra information
if(description instanceof Thing)
- bonus = 2;
+ bonus = 1;
- if(description instanceof BooleanValueRestriction)
- bonus = -1;
+// if(description instanceof BooleanValueRestriction)
+// bonus = -1;
// some bonus for doubles because they are already penalised by length 3
if(description instanceof DatatypeSomeRestriction) {
Modified: trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/ComponentManager.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/core/ComponentManager.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -355,6 +355,10 @@
pool.unregisterComponent(component);
}
+ public void freeAllComponents() {
+ pool.clearComponents();
+ }
+
public <T> T getConfigOptionValue(Component component, ConfigOption<T> option) {
T object = pool.getLastValidConfigValue(component, option);
if(object==null)
Modified: trunk/src/dl-learner/org/dllearner/core/ComponentPool.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/ComponentPool.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/core/ComponentPool.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -70,4 +70,11 @@
lastValidConfigValue.get(component).put(entry.getOption(), entry.getValue());
}
+ // unregisters all components
+ public void clearComponents() {
+ components = new LinkedList<Component>();
+ lastValidConfigValue = new HashMap<Component,Map<ConfigOption<?>,Object>>();
+ configEntryHistory = new HashMap<Component,List<ConfigEntry<?>>>();
+ }
+
}
Modified: trunk/src/dl-learner/org/dllearner/core/Reasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/Reasoner.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/core/Reasoner.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -128,4 +128,5 @@
public SortedSet<Individual> getIndividuals();
+ public void releaseKB();
}
Modified: trunk/src/dl-learner/org/dllearner/core/ReasonerComponent.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/ReasonerComponent.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/core/ReasonerComponent.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -251,4 +251,6 @@
throw new ReasoningMethodUnsupportedException();
}
+ public abstract void releaseKB();
+
}
Modified: trunk/src/dl-learner/org/dllearner/core/ReasoningService.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/ReasoningService.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/core/ReasoningService.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -603,6 +603,10 @@
return reasoner.getPrefixes();
}
+ public void releaseKB() {
+ reasoner.releaseKB();
+ }
+
public long getInstanceCheckReasoningTimeNs() {
return instanceCheckReasoningTimeNs;
}
Modified: trunk/src/dl-learner/org/dllearner/core/owl/ObjectCardinalityRestriction.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/owl/ObjectCardinalityRestriction.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/core/owl/ObjectCardinalityRestriction.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -13,7 +13,7 @@
}
public int getLength() {
- return 1 + role.getLength() + getChild(0).getLength();
+ return 2 + role.getLength() + getChild(0).getLength();
}
public int getNumber() {
Modified: trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -118,6 +118,7 @@
private static boolean ignoreAmes = false;
private static boolean ignoreSalmonella = false;;
private static boolean ignoreCytogenCa = false;
+ private static boolean includeMutagenesis = true;
// if true we learn carcinogenic, if false we learn non-carcinogenic
private static boolean learnCarcinogenic = true;
private static boolean useNewGroups = true;
@@ -134,10 +135,11 @@
// TODO: newgroups are not mapped currently
String[] files = new String[] { "newgroups.pl", "ames.pl", "atoms.pl", "bonds.pl", "gentoxprops.pl",
- "ind_nos.pl", "ind_pos.pl", "pte2/canc_nos.pl", "pte2/pte2ames.pl", "pte2/pte2atoms.pl",
- "pte2/pte2bonds.pl", "pte2/pte2gentox.pl", "pte2/pte2ind_nos.pl", "pte2/pte2newgroups.pl"
+ "ind_nos.pl", "ind_pos.pl"};
+ // "pte2/canc_nos.pl", "pte2/pte2ames.pl", "pte2/pte2atoms.pl",
+ // "pte2/pte2bonds.pl", "pte2/pte2gentox.pl", "pte2/pte2ind_nos.pl", "pte2/pte2newgroups.pl"
// "train.b" => not a pure Prolog file but Progol/Aleph specific
- };
+ // };
File owlFile = new File("examples/carcinogenesis/pte.owl");
Program program = null;
@@ -182,6 +184,10 @@
kbString += "DPDOMAIN(" + getURI2("amesTestPositive") + ") = " + getURI2("Compound") + ".\n";
kbString += "DPRANGE(" + getURI2("amesTestPositive") + ") = BOOLEAN.\n";
}
+ if(includeMutagenesis) {
+ kbString += "DPDOMAIN(" + getURI2("isMutagenic") + ") = " + getURI2("Compound") + ".\n";
+ kbString += "DPRANGE(" + getURI2("isMutagenic") + ") = BOOLEAN.\n";
+ }
kbString += "OPDOMAIN(" + getURI2("hasAtom") + ") = " + getURI2("Compound") + ".\n";
kbString += "OPRANGE(" + getURI2("hasAtom") + ") = " + getURI2("Atom") + ".\n";
kbString += "OPDOMAIN(" + getURI2("hasBond") + ") = " + getURI2("Compound") + ".\n";
@@ -205,6 +211,10 @@
for (Axiom axiom : axioms)
kb.addAxiom(axiom);
}
+
+ if(includeMutagenesis)
+ addMutagenesis(kb);
+
// special handling for ames test (we assume the ames test
// was performed on all compounds but only the positive ones
// are in ames.pl [the rest is negative in Prolog by CWA], so
@@ -395,42 +405,39 @@
// if(!useNewGroups) {
String compoundName = head.getArgument(0).toPLString();
String structureName = head.getArgument(1).toPLString();
-// int count = Integer.parseInt(head.getArgument(2).toPLString());
+ int count = Integer.parseInt(head.getArgument(2).toPLString());
// upper case first letter
String structureClass = structureName.substring(0,1).toUpperCase() + structureName.substring(1);;
String structureInstance = structureName + "-" + structureNr;
addStructureSubclass(axioms, structureClass);
-// for(int i=0; i<count; i++) {
+ for(int i=0; i<count; i++) {
ObjectPropertyAssertion op = getRoleAssertion("hasStructure", compoundName, structureInstance);
axioms.add(op);
// make e.g. halide10-382 instance of Bond-3
ClassAssertionAxiom ca = getConceptAssertion(structureClass, structureInstance);
axioms.add(ca);
structureNr++;
+ }
// }
-// }
} else if (headName.equals("ashby_alert")) {
// ... currently ignored ...
} else if (newGroups.contains(headName)) {
if(useNewGroups) {
String compoundName = head.getArgument(0).toPLString();
String structureName = headName;
-// int count = Integer.parseInt(head.getArgument(2).toPLString());
// upper case first letter
String structureClass = structureName.substring(0,1).toUpperCase() + structureName.substring(1);;
String structureInstance = structureName + "-" + structureNr;
addStructureSubclass(axioms, structureClass);
-// for(int i=0; i<count; i++) {
ObjectPropertyAssertion op = getRoleAssertion("hasStructure", compoundName, structureInstance);
axioms.add(op);
ClassAssertionAxiom ca = getConceptAssertion(structureClass, structureInstance);
axioms.add(ca);
structureNr++;
-// }
}
} else {
// print clauses which are not supported yet
@@ -732,4 +739,36 @@
return ret;
}
+ private static void addMutagenesis(KB kb) {
+ String[] mutagenicCompounds = new String[] {
+ "d101", "d104", "d106", "d107", "d112", "d113", "d117",
+ "d121", "d123", "d126", "d128", "d13", "d135", "d137",
+ "d139", "d140", "d143", "d144", "d145", "d146", "d147",
+ "d152", "d153", "d154", "d155", "d156", "d159", "d160",
+ "d161", "d163", "d164", "d166", "d168", "d171", "d173",
+ "d174", "d177", "d179", "d18", "d180", "d182", "d183",
+ "d185", "d186", "d187", "d188", "d189", "d19", "d191",
+ "d192", "d193", "d195", "d197", "d2", "d201", "d202",
+ "d205", "d206", "d207", "d211", "d214", "d215", "d216",
+ "d224", "d225", "d227", "d228", "d229", "d231", "d235",
+ "d237", "d239", "d242", "d245", "d246", "d249", "d251",
+ "d254", "d257", "d258", "d261", "d264", "d266", "d269",
+ "d27", "d270", "d271", "d28", "d288", "d292", "d297",
+ "d300", "d308", "d309", "d311", "d313", "d314", "d322",
+ "d323", "d324", "d329", "d330", "d332", "d334", "d35",
+ "d36", "d37", "d38", "d41", "d42", "d48", "d50", "d51",
+ "d54", "d58", "d61", "d62", "d63", "d66", "d69", "d72",
+ "d76", "d77", "d78", "d84", "d86", "d89", "d92", "d96"};
+ TreeSet<String> mutagenic = new TreeSet<String>(Arrays.asList(mutagenicCompounds));
+
+ for(String compound : compounds) {
+ if(mutagenic.contains(compound)) {
+ BooleanDatatypePropertyAssertion muta = getBooleanDatatypePropertyAssertion(compound, "isMutagenic", true);
+ kb.addAxiom(muta);
+ } else {
+ BooleanDatatypePropertyAssertion muta = getBooleanDatatypePropertyAssertion(compound, "isMutagenic", false);
+ kb.addAxiom(muta);
+ }
+ }
+ }
}
Modified: trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -760,6 +760,7 @@
return identifier;
}
+ @Override
public void releaseKB() {
connector.releaseKB(kbURI);
}
Modified: trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -50,6 +50,9 @@
import org.dllearner.core.owl.Negation;
import org.dllearner.core.owl.Nothing;
import org.dllearner.core.owl.ObjectAllRestriction;
+import org.dllearner.core.owl.ObjectCardinalityRestriction;
+import org.dllearner.core.owl.ObjectMaxCardinalityRestriction;
+import org.dllearner.core.owl.ObjectMinCardinalityRestriction;
import org.dllearner.core.owl.ObjectProperty;
import org.dllearner.core.owl.ObjectPropertyExpression;
import org.dllearner.core.owl.ObjectPropertyHierarchy;
@@ -290,6 +293,82 @@
return false;
}
return true;
+ } else if (description instanceof ObjectMinCardinalityRestriction) {
+ ObjectPropertyExpression ope = ((ObjectCardinalityRestriction) description).getRole();
+ if (!(ope instanceof ObjectProperty))
+ throw new ReasoningMethodUnsupportedException("Instance check for description "
+ + description + " unsupported. Inverse object properties not supported.");
+ ObjectProperty op = (ObjectProperty) ope;
+ Description child = description.getChild(0);
+ Map<Individual, SortedSet<Individual>> mapping = opPos.get(op);
+
+ if (mapping == null) {
+ logger.warn("Instance check of a description with an undefinied property (" + op
+ + ").");
+ return true;
+ }
+
+ int number = ((ObjectCardinalityRestriction) description).getNumber();
+ int nrOfFillers = 0;
+
+ SortedSet<Individual> roleFillers = opPos.get(op).get(individual);
+ // return false if there are none or not enough role fillers
+ if (roleFillers == null || roleFillers.size() < number)
+ return false;
+
+ int index = 0;
+ for (Individual roleFiller : roleFillers) {
+ index++;
+ if (instanceCheck(child, roleFiller)) {
+ nrOfFillers++;
+ if(nrOfFillers == number)
+ return true;
+ // earyl abort: e.g. >= 10 hasStructure.Methyl;
+ // if there are 11 fillers and 2 are not Methyl, the result is false
+ } /* else {
+ if(roleFillers.size() - index < number)
+ return false;
+ }*/
+ }
+ return false;
+ } else if (description instanceof ObjectMaxCardinalityRestriction) {
+ ObjectPropertyExpression ope = ((ObjectCardinalityRestriction) description).getRole();
+ if (!(ope instanceof ObjectProperty))
+ throw new ReasoningMethodUnsupportedException("Instance check for description "
+ + description + " unsupported. Inverse object properties not supported.");
+ ObjectProperty op = (ObjectProperty) ope;
+ Description child = description.getChild(0);
+ Map<Individual, SortedSet<Individual>> mapping = opPos.get(op);
+
+ if (mapping == null) {
+ logger.warn("Instance check of a description with an undefinied property (" + op
+ + ").");
+ return true;
+ }
+
+ int number = ((ObjectCardinalityRestriction) description).getNumber();
+ int nrOfFillers = 0;
+
+ SortedSet<Individual> roleFillers = opPos.get(op).get(individual);
+ // return false if there are none or not enough role fillers
+ if (roleFillers == null || roleFillers.size() > number)
+ return true;
+
+ int index = 0;
+ for (Individual roleFiller : roleFillers) {
+ index++;
+ if (instanceCheck(child, roleFiller)) {
+ nrOfFillers++;
+ if(nrOfFillers == number)
+ return false;
+ // earyl abort: e.g. <= 5 hasStructure.Methyl;
+ // if there are 6 fillers and 2 are not Methyl, the result is true
+ } /* else {
+ if(roleFillers.size() - index <= number)
+ return true;
+ } */
+ }
+ return true;
} else if (description instanceof BooleanValueRestriction) {
DatatypeProperty dp = ((BooleanValueRestriction)description).getRestrictedPropertyExpresssion();
boolean value = ((BooleanValueRestriction)description).getBooleanValue();
@@ -503,6 +582,19 @@
@Override
public Description getRange(ObjectProperty objectProperty) {
return rc.getRange(objectProperty);
+ }
+
+ @Override
+ public Map<Individual, SortedSet<Individual>> getRoleMembers(ObjectProperty atomicRole) {
+ return opPos.get(atomicRole);
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.ReasonerComponent#releaseKB()
+ */
+ @Override
+ public void releaseKB() {
+ rc.releaseKB();
}
}
Modified: trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -182,5 +182,13 @@
*/
public Map<String, String> getPrefixes() {
return rc.getPrefixes();
- }
+ }
+
+ /* (non-Javadoc)
+ * @see org.dllearner.core.ReasonerComponent#releaseKB()
+ */
+ @Override
+ public void releaseKB() {
+ rc.releaseKB();
+ }
}
Modified: trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -1021,4 +1021,18 @@
return prefixes;
}
+ /* (non-Javadoc)
+ * @see org.dllearner.core.ReasonerComponent#releaseKB()
+ */
+ @Override
+ public void releaseKB() {
+ try {
+ reasoner.clearOntologies();
+ reasoner.dispose();
+ } catch (OWLReasonerException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
+ }
+
}
Modified: trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -32,6 +32,7 @@
import java.util.TreeSet;
import java.util.Map.Entry;
+import org.apache.log4j.Logger;
import org.dllearner.algorithms.refinement.RefinementOperator;
import org.dllearner.core.ReasoningService;
import org.dllearner.core.owl.BooleanValueRestriction;
@@ -47,6 +48,9 @@
import org.dllearner.core.owl.Negation;
import org.dllearner.core.owl.Nothing;
import org.dllearner.core.owl.ObjectAllRestriction;
+import org.dllearner.core.owl.ObjectCardinalityRestriction;
+import org.dllearner.core.owl.ObjectMaxCardinalityRestriction;
+import org.dllearner.core.owl.ObjectMinCardinalityRestriction;
import org.dllearner.core.owl.ObjectProperty;
import org.dllearner.core.owl.ObjectPropertyExpression;
import org.dllearner.core.owl.ObjectQuantorRestriction;
@@ -72,6 +76,10 @@
*/
public class RhoDRDown implements RefinementOperator {
+ @SuppressWarnings({"unused"})
+ private static Logger logger = Logger
+ .getLogger(RhoDRDown.class);
+
private ReasoningService rs;
// hierarchies
@@ -82,6 +90,9 @@
private Map<DatatypeProperty,Description> dpDomains = new TreeMap<DatatypeProperty,Description>();
private Map<ObjectProperty,Description> opRanges = new TreeMap<ObjectProperty,Description>();
+ // maximum number of fillers for eeach role
+ private Map<ObjectProperty,Integer> maxNrOfFillers = new TreeMap<ObjectProperty,Integer>();
+
// start concept (can be used to start from an arbitrary concept, needs
// to be Thing or NamedClass), note that when you use e.g. Compound as
// start class, then the algorithm should start the search with class
@@ -137,6 +148,7 @@
private boolean applyExistsFilter = true;
private boolean useAllConstructor = true;
private boolean useExistsConstructor = true;
+ private boolean useCardinalityRestrictions = true;
private boolean useNegation = true;
private boolean useBooleanDatatypes = true;
private boolean useDoubleDatatypes = true;
@@ -181,7 +193,36 @@
computeSplits(dp);
}
+ // determine the maximum number of fillers for each role
+ for(ObjectProperty op : rs.getAtomicRoles()) {
+ int maxFillers = 0;
+ Map<Individual,SortedSet<Individual>> opMembers = rs.getRoleMembers(op);
+ for(SortedSet<Individual> inds : opMembers.values()) {
+ if(inds.size()>maxFillers)
+ maxFillers = inds.size();
+ }
+ maxNrOfFillers.put(op, maxFillers);
+ }
+
/*
+ String conceptStr = "(\"http://dl-learner.org/carcinogenesis#Compound\" AND (>= 2 \"http://dl-learner.org/carcinogenesis#hasStructure\".\"http://dl-learner.org/carcinogenesis#Ar_halide\" OR ((\"http://dl-learner.org/carcinogenesis#amesTestPositive\" IS TRUE) AND >= 5 \"http://dl-learner.org/carcinogenesis#hasBond\". TOP)))";
+ try {
+ NamedClass struc = new NamedClass("http://dl-learner.org/carcinogenesis#Compound");
+ Description d = KBParser.parseConcept(conceptStr);
+ SortedSet<Description> ds = (SortedSet<Description>) refine(d,15,null,struc);
+ System.out.println(ds);
+
+ Individual i = new Individual("http://dl-learner.org/carcinogenesis#d101");
+ rs.instanceCheck(ds.first(), i);
+
+ } catch (ParseException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
+ System.exit(0);
+ */
+
+ /*
NamedClass struc = new NamedClass("http://dl-learner.org/carcinogenesis#Atom");
ObjectProperty op = new ObjectProperty("http://dl-learner.org/carcinogenesis#hasAtom");
ObjectSomeRestriction oar = new ObjectSomeRestriction(op,Thing.instance);
@@ -222,7 +263,7 @@
public Set<Description> refine(Description description, int maxLength,
List<Description> knownRefinements, Description currDomain) {
-// System.out.println(description + " " + currDomain + " " + maxLength);
+// logger.trace(description + " " + currDomain + " " + maxLength);
// actions needing to be performed if this is the first time the
// current domain is used
@@ -336,6 +377,15 @@
for(ObjectProperty moreSpecialRole : moreSpecialRoles)
refinements.add(new ObjectSomeRestriction(moreSpecialRole, description.getChild(0)));
+ // rule 3: EXISTS r.D => >= 2 r.D
+ // (length increases by 1 so we have to check whether max length is sufficient)
+ if(useCardinalityRestrictions) {
+ if(maxLength > description.getLength() && maxNrOfFillers.get(ar)>1) {
+ ObjectMinCardinalityRestriction min = new ObjectMinCardinalityRestriction(2,role,description.getChild(0));
+ refinements.add(min);
+ }
+ }
+
} else if (description instanceof ObjectAllRestriction) {
ObjectPropertyExpression role = ((ObjectQuantorRestriction)description).getRole();
Description range = opRanges.get(role);
@@ -360,6 +410,28 @@
refinements.add(new ObjectAllRestriction(moreSpecialRole, description.getChild(0)));
}
+ // rule 4: ALL r.D => <= (maxFillers-1) r.D
+ // (length increases by 1 so we have to check whether max length is sufficient)
+ if(useCardinalityRestrictions) {
+ if(maxLength > description.getLength() && maxNrOfFillers.get(ar)>1) {
+ ObjectMaxCardinalityRestriction max = new ObjectMaxCardinalityRestriction(maxNrOfFillers.get(ar)-1,role,description.getChild(0));
+ refinements.add(max);
+ }
+ }
+ } else if (description instanceof ObjectCardinalityRestriction) {
+ if(description instanceof ObjectMaxCardinalityRestriction) {
+ // <= x r.C => <= (x-1) r.C
+ ObjectMaxCardinalityRestriction max = (ObjectMaxCardinalityRestriction) description;
+ int number = max.getNumber();
+ if(number > 0)
+ refinements.add(new ObjectMaxCardinalityRestriction(number-1,max.getRole(),max.getChild(0)));
+ } else if(description instanceof ObjectMinCardinalityRestriction) {
+ // >= x r.C => >= (x+1) r.C
+ ObjectMinCardinalityRestriction min = (ObjectMinCardinalityRestriction) description;
+ int number = min.getNumber();
+ if(number < maxNrOfFillers.get(min.getRole()))
+ refinements.add(new ObjectMinCardinalityRestriction(number+1,min.getRole(),min.getChild(0)));
+ }
} else if (description instanceof DatatypeSomeRestriction) {
DatatypeSomeRestriction dsr = (DatatypeSomeRestriction) description;
@@ -434,6 +506,7 @@
}
// check for double datatype properties
+ /*
if(c instanceof DatatypeSomeRestriction &&
description instanceof DatatypeSomeRestriction) {
DataRange dr = ((DatatypeSomeRestriction)c).getDataRange();
@@ -442,7 +515,7 @@
if((dr instanceof DoubleMaxValue && dr2 instanceof DoubleMaxValue)
||(dr instanceof DoubleMinValue && dr2 instanceof DoubleMinValue))
skip = true;
- }
+ }*/
// perform a disjointness check when named classes are added;
// this can avoid a lot of superfluous computation in the algorithm e.g.
@@ -462,7 +535,9 @@
ConceptTransformation.cleanConceptNonRecursive(mc);
ConceptTransformation.transformToOrderedNegationNormalFormNonRecursive(mc, conceptComparator);
- refinements.add(mc);
+ // last check before intersection is added
+ if(checkIntersection(mc))
+ refinements.add(mc);
}
}
}
@@ -481,11 +556,15 @@
// when a child of an intersection is refined and reintegrated into the
// intersection, we can perform some sanity checks;
// method returns true if everything is OK and false otherwise
- private boolean checkIntersection(Intersection intersection) {
+ // TODO: can be implemented more efficiently if the newly added child
+ // is given as parameter
+ public static boolean checkIntersection(Intersection intersection) {
// rule 1: max. restrictions at most once
boolean maxDoubleOccurence = false;
// rule 2: min restrictions at most once
boolean minDoubleOccurence = false;
+ // rule 3: no double boolean datatypes
+ TreeSet<DatatypeProperty> occuredDP = new TreeSet<DatatypeProperty>();
for(Description child : intersection.getChildren()) {
if(child instanceof DatatypeSomeRestriction) {
DataRange dr = ((DatatypeSomeRestriction)child).getDataRange();
@@ -500,7 +579,14 @@
else
minDoubleOccurence = true;
}
+ } else if(child instanceof BooleanValueRestriction) {
+ DatatypeProperty dp = (DatatypeProperty) ((BooleanValueRestriction)child).getRestrictedPropertyExpression();
+// System.out.println("dp: " + dp);
+ // return false if the boolean property exists already
+ if(!occuredDP.add(dp))
+ return false;
}
+// System.out.println(child.getClass());
}
return true;
}
Modified: trunk/src/dl-learner/org/dllearner/utilities/ConceptComparator.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/utilities/ConceptComparator.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/utilities/ConceptComparator.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -12,6 +12,9 @@
import org.dllearner.core.owl.NamedClass;
import org.dllearner.core.owl.Nothing;
import org.dllearner.core.owl.Description;
+import org.dllearner.core.owl.ObjectCardinalityRestriction;
+import org.dllearner.core.owl.ObjectMaxCardinalityRestriction;
+import org.dllearner.core.owl.ObjectMinCardinalityRestriction;
import org.dllearner.core.owl.ObjectSomeRestriction;
import org.dllearner.core.owl.Intersection;
import org.dllearner.core.owl.SimpleDoubleDataRange;
@@ -172,6 +175,46 @@
return roleCompare;
} else
return -1;
+ } else if(concept1 instanceof ObjectMinCardinalityRestriction) {
+ if(concept2.getChildren().size()<1 || concept2 instanceof Negation || concept2 instanceof ObjectQuantorRestriction)
+ return 1;
+ // first criterion: object property
+ // second criterion: number
+ // third criterion: children
+ else if(concept2 instanceof ObjectMinCardinalityRestriction) {
+ int roleCompare = rc.compare(((ObjectCardinalityRestriction)concept1).getRole(), ((ObjectCardinalityRestriction)concept2).getRole());
+ if(roleCompare == 0) {
+ Integer number1 = ((ObjectCardinalityRestriction)concept1).getNumber();
+ Integer number2 = ((ObjectCardinalityRestriction)concept2).getNumber();
+ int numberCompare = number1.compareTo(number2);
+ if(numberCompare == 0)
+ return compare(concept1.getChild(0), concept2.getChild(0));
+ else
+ return numberCompare;
+ } else
+ return roleCompare;
+ } else
+ return -1;
+ } else if(concept1 instanceof ObjectMaxCardinalityRestriction) {
+ if(concept2.getChildren().size()<1 || concept2 instanceof Negation || concept2 instanceof ObjectQuantorRestriction || concept2 instanceof ObjectMinCardinalityRestriction)
+ return 1;
+ // first criterion: object property
+ // second criterion: number
+ // third criterion: children
+ else if(concept2 instanceof ObjectMaxCardinalityRestriction) {
+ int roleCompare = rc.compare(((ObjectCardinalityRestriction)concept1).getRole(), ((ObjectCardinalityRestriction)concept2).getRole());
+ if(roleCompare == 0) {
+ Integer number1 = ((ObjectCardinalityRestriction)concept1).getNumber();
+ Integer number2 = ((ObjectCardinalityRestriction)concept2).getNumber();
+ int numberCompare = number1.compareTo(number2);
+ if(numberCompare == 0)
+ return compare(concept1.getChild(0), concept2.getChild(0));
+ else
+ return numberCompare;
+ } else
+ return roleCompare;
+ } else
+ return -1;
} else if(concept1 instanceof Intersection) {
if(concept2.getChildren().size()<2)
return 1;
Modified: trunk/src/dl-learner/org/dllearner/utilities/CrossValidation.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/utilities/CrossValidation.java 2008-03-14 22:58:35 UTC (rev 712)
+++ trunk/src/dl-learner/org/dllearner/utilities/CrossValidation.java 2008-03-16 19:03:46 UTC (rev 713)
@@ -21,9 +21,11 @@
import java.io.File;
import java.text.DecimalFormat;
+import java.util.Collections;
import java.util.HashSet;
import java.util.LinkedList;
import java.util.List;
+import java.util.Random;
import java.util.Set;
import org.apache.log4j.ConsoleAppender;
@@ -65,20 +67,27 @@
else
leaveOneOut = true;
+ if(folds < 2) {
+ System.out.println("At least 2 fold needed.");
+ System.exit(0);
+ }
+
// create logger (a simple logger which outputs
// its messages to the console)
SimpleLayout layout = new SimpleLayout();
ConsoleAppender consoleAppender = new ConsoleAppender(layout);
logger.removeAllAppenders();
logger.addAppender(consoleAppender);
- logger.setLevel(Level.WARN);
+ logger.setLevel(Level.WARN);
+ // disable OWL API info output
+ java.util.logging.Logger.getLogger("").setLevel(java.util.logging.Level.WARNING);
new CrossValidation(file, folds, leaveOneOut);
}
public CrossValidation(File file, int folds, boolean leaveOneOut) {
-
+
DecimalFormat df = new DecimalFormat();
ComponentManager cm = ComponentManager.getInstance();
@@ -104,10 +113,13 @@
if(lp instanceof PosNegLP) {
+ // get examples and shuffle them to
Set<Individual> posExamples = ((PosNegLP)lp).getPositiveExamples();
List<Individual> posExamplesList = new LinkedList<Individual>(posExamples);
+ Collections.shuffle(posExamplesList, new Random(1));
Set<Individual> negExamples = ((PosNegLP)lp).getNegativeExamples();
List<Individual> negExamplesList = new LinkedList<Individual>(negExamples);
+ Collections.shuffle(negExamplesList, new Random(2));
// sanity check whether nr. of folds makes sense for this benchmark
if(!leaveOneOut && (posExamples.size()<folds && negExamples.size()<folds)) {
@@ -138,6 +150,9 @@
int[] splitsPos = calculateSplits(posExamples.size(),folds);
int[] splitsNeg = calculateSplits(negExamples.size(),folds);
+// System.out.println(splitsPos[0]);
+// System.out.println(splitsNeg[0]);
+
// calculating training and test sets
for(int i=0; i<folds; i++) {
Set<Individual> testPos = getTestingSet(posExamplesList, splitsPos, i);
@@ -180,16 +195,45 @@
Set<String> neg = Datastructures.individualSetToStringSet(trainingSetsNeg.get(currFold));
cm.applyConfigEntry(lp, "positiveExamples", pos);
cm.applyConfigEntry(lp, "negativeExamples", neg);
+// System.out.println("pos: " + pos.size());
+// System.out.println("neg: " + neg.size());
+// System.exit(0);
+ // es fehlt init zwischendurch
+
LearningAlgorithm la = start.getLearningAlgorithm();
+ // init again, because examples have changed
+ try {
+ la.init();
+ } catch (ComponentInitException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
long algorithmStartTime = System.nanoTime();
la.start();
long algorithmDuration = System.nanoTime() - algorithmStartTime;
runtime.addNumber(algorithmDuration/(double)1000000000);
Description concept = la.getBestSolution();
- int correctExamples = getCorrectPosClassified(rs, concept, testSetsPos.get(currFold))
- + getCorrectNegClassified(rs, concept, testSetsNeg.get(currFold));
+
+ Set<Individual> tmp = rs.instanceCheck(concept, testSetsPos.get(currFold));
+ Set<Individual> tmp2 = Helper.difference(testSetsPos.get(currFold), tmp);
+ Set<Individual> tmp3 = rs.instanceCheck(concept, testSetsNeg.get(currFold));
+
+ System.out.println("test set errors pos: " + tmp2);
+ System.out.println("test set errors neg: " + tmp3);
+
+ // calculate training accuracies
+ int trainingCorrectPosClassified = getCorrectPosClassified(rs, concept, trainingSetsPos.get(currFold));
+ int trainingCorrectNegClassified = getCorrectNegClassified(rs, concept, trainingSetsNeg.get(currFold));
+ int trainingCorrectExamples = trainingCorrectPosClassified + trainingCorrectNegClassified;
+ double trainingAccuracy = 100*((double)trainingCorrectExamples/(trainingSetsPos.get(currFold).size()+
+ trainingSetsNeg.get(currFold).size()));
+
+ // calculate test accuracies
+ int correctPosClassified = getCorrectPosClassified(rs, concept, testSetsPos.get(currFold));
+ int correctNegClassified = getCorrectNegClassified(rs, concept, testSetsNeg.get(currFold));
+ int correctExamples = correctPosClassified + correctNegClassified;
double currAccuracy = 100*((double)correctExamples/(testSetsPos.get(currFold).size()+
testSetsNeg.get(currFold).size()));
accuracy.addNumber(currAccuracy);
@@ -197,10 +241,17 @@
length.addNumber(concept.getLength());
System.out.println("fold " + currFold + " (" + file + "):");
+ System.out.println(" training: " + pos.size() + " positive and " + neg.size() + " negative examples");
+ System.out.println(" testing: " + correctPosClassified + "/" + testSetsPos.get(currFold).size() + " correct positives, "
+ + correctNegClassified + "/" + testSetsNeg.get(currFold).size() + " correct negatives");
System.out.println(" concept: " + concept);
- System.out.println(" accuracy: " + df.format(currAccuracy) + "%");
+ System.out.println(" accuracy: " + df.format(currAccuracy) + "% (" + df.format(trainingAccuracy) + "% on training set)");
System.out.println(" length: " + df.format(concept.getLength()));
System.out.println(" runtime: " + df.format(algorithmDuration/(double)1000000000) + "s");
+
+ // free all resources
+ start.getReasoningService().releaseKB();
+ cm.freeAllComponents();
}
System.out.println();
@@ -211,12 +262,12 @@
}
- private int getCorrectPosClassified(ReasoningService rs, Description concept, Set<Individual> posClassified) {
- return rs.instanceCheck(concept, posClassified).size();
+ private int getCorrectPosClassified(ReasoningService rs, Description concept, Set<Individual> testSetPos) {
+ return rs.instanceCheck(concept, testSetPos).size();
}
- private int getCorrectNegClassified(ReasoningService rs, Description concept, Set<Individual> negClassified) {
- return negClassified.size() - rs.instanceCheck(concept, negClassified).size();
+ private int getCorrectNegClassified(ReasoningService rs, Description concept, Set<Individual> testSetNeg) {
+ return testSetNeg.size() - rs.instanceCheck(concept, testSetNeg).size();
}
private Set<Individual> getTestingSet(List<Individual> examples, int[] splits, int fold) {
@@ -229,6 +280,8 @@
// the split corresponds to the ends of the folds
int toIndex = splits[fold];
+// System.out.println("from " + fromIndex + " to " + toIndex);
+
Set<Individual> testingSet = new HashSet<Individual>();
// +1 because 2nd element is exclusive in subList method
testingSet.addAll(examples.subList(fromIndex, toIndex));
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <ton...@us...> - 2008-03-14 22:58:38
|
Revision: 712
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=712&view=rev
Author: tonytacker
Date: 2008-03-14 15:58:35 -0700 (Fri, 14 Mar 2008)
Log Message:
-----------
fixes
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/gui/ConfigSave.java
trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java
Modified: trunk/src/dl-learner/org/dllearner/gui/ConfigSave.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/ConfigSave.java 2008-03-14 19:53:45 UTC (rev 711)
+++ trunk/src/dl-learner/org/dllearner/gui/ConfigSave.java 2008-03-14 22:58:35 UTC (rev 712)
@@ -177,7 +177,6 @@
* @return a string to write
*/
public String getTypeForFile(Class<?> componentClass) {
- System.out.println("getTypeForFile: " + componentClass);
// reasoner
if (DIGReasoner.class == componentClass)
return ("dig");
Modified: trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java 2008-03-14 19:53:45 UTC (rev 711)
+++ trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java 2008-03-14 22:58:35 UTC (rev 712)
@@ -21,7 +21,6 @@
*/
import javax.swing.*;
-import javax.swing.tree.*;
import org.dllearner.algorithms.refexamples.*;
/**
@@ -47,38 +46,12 @@
setIconImage(java.awt.Toolkit.getDefaultToolkit().getImage(
this.getClass().getResource("icon.gif")));
- // test example tree
- DefaultMutableTreeNode exampleRoot = new DefaultMutableTreeNode("root");
- for (int knot = 0; knot < 4; knot++) {
- DefaultMutableTreeNode node = new DefaultMutableTreeNode("knot " + knot);
- exampleRoot.add(node);
- for (int leaf = 1; leaf < 4; leaf++)
- node.add(new DefaultMutableTreeNode("leaf " + (knot * 3 + leaf)));
- }
-
// tree model
- EBNodeTreeModel root = null;
- // if (config.getLearningAlgorithm() != null) {
if (config.getLearningAlgorithm() instanceof ExampleBasedROLComponent) {
ExampleBasedROLComponent ebrol = (ExampleBasedROLComponent) config
.getLearningAlgorithm();
ExampleBasedNode rootNode = ebrol.getStartNode();
- root = new EBNodeTreeModel(rootNode);
-
- // show tree
- if (root != null) {
- //System.out.println("TEST: " + root.getChildCount(rootNode));
- for (int i = 0; i < root.getChildCount(rootNode); i++) {
- // Object node = root.getChild(rootNode, i);
-
- root.getChild(rootNode, i);
- //System.out.println("TEST: " + root.getChild(rootNode, i));
- }
- JTree tree = new JTree(root);
- this.add(new JScrollPane(tree));
- }
- } else {
- JTree tree = new JTree(exampleRoot);
+ JTree tree = new JTree(new EBNodeTreeModel(rootNode));
this.add(new JScrollPane(tree));
}
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <ton...@us...> - 2008-03-14 19:53:57
|
Revision: 711
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=711&view=rev
Author: tonytacker
Date: 2008-03-14 12:53:45 -0700 (Fri, 14 Mar 2008)
Log Message:
-----------
better save (with algorithm)
Modified Paths:
--------------
trunk/examples/test.conf
trunk/src/dl-learner/org/dllearner/gui/ConfigSave.java
Modified: trunk/examples/test.conf
===================================================================
--- trunk/examples/test.conf 2008-03-14 10:33:10 UTC (rev 710)
+++ trunk/examples/test.conf 2008-03-14 19:53:45 UTC (rev 711)
@@ -1,7 +1,13 @@
import("father.kb");
+reasoner = "fastInstanceChecker";
+problem = "posNegDefinition";
-+"http://localhost/foo#bernd"
-+"http://localhost/foo#gabi"
++"http://localhost/foo#markus"
++"http://localhost/foo#michelle"
++"http://localhost/foo#stefan"
--"http://localhost/foo#markus"
+-"http://localhost/foo#anna"
+-"http://localhost/foo#bernd"
+-"http://localhost/foo#gabi"
+algorithm = "refexamples";
Modified: trunk/src/dl-learner/org/dllearner/gui/ConfigSave.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/ConfigSave.java 2008-03-14 10:33:10 UTC (rev 710)
+++ trunk/src/dl-learner/org/dllearner/gui/ConfigSave.java 2008-03-14 19:53:45 UTC (rev 711)
@@ -24,13 +24,24 @@
//import java.net.URL;
import java.util.List; //import java.util.Map;
import java.util.Map;
-
-import org.dllearner.core.ComponentManager; //import org.dllearner.core.KnowledgeSource;
+import org.dllearner.core.ComponentManager;
import org.dllearner.core.Component;
import org.dllearner.core.config.ConfigEntry;
import org.dllearner.core.config.ConfigOption;
import org.dllearner.core.config.InvalidConfigOptionValueException;
import org.dllearner.cli.*;
+import org.dllearner.reasoning.DIGReasoner;
+import org.dllearner.reasoning.FastInstanceChecker;
+import org.dllearner.reasoning.FastRetrievalReasoner;
+import org.dllearner.reasoning.OWLAPIReasoner;
+import org.dllearner.learningproblems.PosNegDefinitionLP;
+import org.dllearner.learningproblems.PosNegInclusionLP;
+import org.dllearner.learningproblems.PosOnlyDefinitionLP;
+import org.dllearner.algorithms.BruteForceLearner;
+import org.dllearner.algorithms.RandomGuesser;
+import org.dllearner.algorithms.gp.GP;
+import org.dllearner.algorithms.refexamples.ExampleBasedROLComponent;
+import org.dllearner.algorithms.refinement.ROLearner;
import java.io.PrintWriter;
/**
@@ -95,21 +106,21 @@
config.getKnowledgeSource(), "url");
if (url != null) {
out.println("import(\"" + url + "\",\"SPARQL\");");
- setFileEntry(config.getKnowledgeSource(), out);
+ setFileEntry(null, config.getKnowledgeSource(), out);
}
}
}
// REASONER
if (config.getReasoner() != null) {
- setFileEntry(config.getReasoner(), out);
+ setFileEntry("reasoner", config.getReasoner(), out);
}
// LEARNING PROBLEM
if (config.getLearningProblem() != null) {
- setFileEntry(config.getLearningProblem(), out);
+ setFileEntry("problem", config.getLearningProblem(), out);
}
// LEARNING ALGORITHM
if (config.getLearningAlgorithm() != null) {
- setFileEntry(config.getLearningAlgorithm(), out);
+ setFileEntry("algorithm", config.getLearningAlgorithm(), out);
}
}
@@ -121,7 +132,13 @@
* i.e. config.getKnowledgeSource(), config.getResaoner(), ...
*/
@SuppressWarnings("unchecked")
- public void setFileEntry(Component component, PrintWriter out) {
+ public void setFileEntry(String type, Component component, PrintWriter out) {
+ // write used algorithm
+ if (type != null) {
+ String alg = getTypeForFile(component.getClass());
+ if (alg != null)
+ out.println(type + " = \"" + alg + "\";");
+ }
// get prefix map
Map<Class<? extends Component>, String> componentPrefixMapping = Start
.createComponentPrefixMapping();
@@ -152,4 +169,43 @@
}
}
+ /**
+ * Get type to write into configuration file.
+ *
+ * @param componentClass
+ * is your class for reasoner, problem, algorithm
+ * @return a string to write
+ */
+ public String getTypeForFile(Class<?> componentClass) {
+ System.out.println("getTypeForFile: " + componentClass);
+ // reasoner
+ if (DIGReasoner.class == componentClass)
+ return ("dig");
+ if (OWLAPIReasoner.class == componentClass)
+ return ("owlAPI");
+ if (FastRetrievalReasoner.class == componentClass)
+ return ("fastRetrieval");
+ if (FastInstanceChecker.class == componentClass)
+ return ("fastInstanceChecker");
+ // problem
+ if (PosNegDefinitionLP.class == componentClass)
+ return ("posNegDefinition");
+ if (PosNegInclusionLP.class == componentClass)
+ return ("posNegInclusion");
+ if (PosOnlyDefinitionLP.class == componentClass)
+ return ("posOnlyDefinition");
+ // algorithm
+ if (ROLearner.class == componentClass)
+ return ("refinement");
+ if (ExampleBasedROLComponent.class == componentClass)
+ return ("refexamples");
+ if (GP.class == componentClass)
+ return ("gp");
+ if (BruteForceLearner.class == componentClass)
+ return ("bruteForce");
+ if (RandomGuesser.class == componentClass)
+ return ("randomGuesser");
+ return null;
+ }
+
}
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <ku...@us...> - 2008-03-13 16:48:26
|
Revision: 709
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=709&view=rev
Author: kurzum
Date: 2008-03-13 09:48:24 -0700 (Thu, 13 Mar 2008)
Log Message:
-----------
krk cont. still not working, might be buggy
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/examples/KRK.java
Added Paths:
-----------
trunk/examples/krk/ONE.txt
trunk/examples/krk/ZERO.txt
trunk/examples/krk/krkopt.data
trunk/examples/krk/krkopt_large.data
trunk/examples/krk/krkopt_small.data
trunk/examples/krk/test.conf
trunk/examples/krk/test.owl
Added: trunk/examples/krk/ONE.txt
===================================================================
--- trunk/examples/krk/ONE.txt (rev 0)
+++ trunk/examples/krk/ONE.txt 2008-03-13 16:48:24 UTC (rev 709)
@@ -0,0 +1,159 @@
++"http://www.test.de/test#game100"
++"http://www.test.de/test#game101"
++"http://www.test.de/test#game102"
++"http://www.test.de/test#game103"
++"http://www.test.de/test#game104"
++"http://www.test.de/test#game105"
++"http://www.test.de/test#game28"
++"http://www.test.de/test#game29"
++"http://www.test.de/test#game30"
++"http://www.test.de/test#game31"
++"http://www.test.de/test#game32"
++"http://www.test.de/test#game33"
++"http://www.test.de/test#game34"
++"http://www.test.de/test#game35"
++"http://www.test.de/test#game36"
++"http://www.test.de/test#game37"
++"http://www.test.de/test#game38"
++"http://www.test.de/test#game39"
++"http://www.test.de/test#game40"
++"http://www.test.de/test#game41"
++"http://www.test.de/test#game42"
++"http://www.test.de/test#game43"
++"http://www.test.de/test#game44"
++"http://www.test.de/test#game45"
++"http://www.test.de/test#game46"
++"http://www.test.de/test#game47"
++"http://www.test.de/test#game48"
++"http://www.test.de/test#game49"
++"http://www.test.de/test#game50"
++"http://www.test.de/test#game51"
++"http://www.test.de/test#game52"
++"http://www.test.de/test#game53"
++"http://www.test.de/test#game54"
++"http://www.test.de/test#game55"
++"http://www.test.de/test#game56"
++"http://www.test.de/test#game57"
++"http://www.test.de/test#game58"
++"http://www.test.de/test#game59"
++"http://www.test.de/test#game60"
++"http://www.test.de/test#game61"
++"http://www.test.de/test#game62"
++"http://www.test.de/test#game63"
++"http://www.test.de/test#game64"
++"http://www.test.de/test#game65"
++"http://www.test.de/test#game66"
++"http://www.test.de/test#game67"
++"http://www.test.de/test#game68"
++"http://www.test.de/test#game69"
++"http://www.test.de/test#game70"
++"http://www.test.de/test#game71"
++"http://www.test.de/test#game72"
++"http://www.test.de/test#game73"
++"http://www.test.de/test#game74"
++"http://www.test.de/test#game75"
++"http://www.test.de/test#game76"
++"http://www.test.de/test#game77"
++"http://www.test.de/test#game78"
++"http://www.test.de/test#game79"
++"http://www.test.de/test#game80"
++"http://www.test.de/test#game81"
++"http://www.test.de/test#game82"
++"http://www.test.de/test#game83"
++"http://www.test.de/test#game84"
++"http://www.test.de/test#game85"
++"http://www.test.de/test#game86"
++"http://www.test.de/test#game87"
++"http://www.test.de/test#game88"
++"http://www.test.de/test#game89"
++"http://www.test.de/test#game90"
++"http://www.test.de/test#game91"
++"http://www.test.de/test#game92"
++"http://www.test.de/test#game93"
++"http://www.test.de/test#game94"
++"http://www.test.de/test#game95"
++"http://www.test.de/test#game96"
++"http://www.test.de/test#game97"
++"http://www.test.de/test#game98"
++"http://www.test.de/test#game99"
+
+
+-"http://www.test.de/test#game100"
+-"http://www.test.de/test#game101"
+-"http://www.test.de/test#game102"
+-"http://www.test.de/test#game103"
+-"http://www.test.de/test#game104"
+-"http://www.test.de/test#game105"
+-"http://www.test.de/test#game28"
+-"http://www.test.de/test#game29"
+-"http://www.test.de/test#game30"
+-"http://www.test.de/test#game31"
+-"http://www.test.de/test#game32"
+-"http://www.test.de/test#game33"
+-"http://www.test.de/test#game34"
+-"http://www.test.de/test#game35"
+-"http://www.test.de/test#game36"
+-"http://www.test.de/test#game37"
+-"http://www.test.de/test#game38"
+-"http://www.test.de/test#game39"
+-"http://www.test.de/test#game40"
+-"http://www.test.de/test#game41"
+-"http://www.test.de/test#game42"
+-"http://www.test.de/test#game43"
+-"http://www.test.de/test#game44"
+-"http://www.test.de/test#game45"
+-"http://www.test.de/test#game46"
+-"http://www.test.de/test#game47"
+-"http://www.test.de/test#game48"
+-"http://www.test.de/test#game49"
+-"http://www.test.de/test#game50"
+-"http://www.test.de/test#game51"
+-"http://www.test.de/test#game52"
+-"http://www.test.de/test#game53"
+-"http://www.test.de/test#game54"
+-"http://www.test.de/test#game55"
+-"http://www.test.de/test#game56"
+-"http://www.test.de/test#game57"
+-"http://www.test.de/test#game58"
+-"http://www.test.de/test#game59"
+-"http://www.test.de/test#game60"
+-"http://www.test.de/test#game61"
+-"http://www.test.de/test#game62"
+-"http://www.test.de/test#game63"
+-"http://www.test.de/test#game64"
+-"http://www.test.de/test#game65"
+-"http://www.test.de/test#game66"
+-"http://www.test.de/test#game67"
+-"http://www.test.de/test#game68"
+-"http://www.test.de/test#game69"
+-"http://www.test.de/test#game70"
+-"http://www.test.de/test#game71"
+-"http://www.test.de/test#game72"
+-"http://www.test.de/test#game73"
+-"http://www.test.de/test#game74"
+-"http://www.test.de/test#game75"
+-"http://www.test.de/test#game76"
+-"http://www.test.de/test#game77"
+-"http://www.test.de/test#game78"
+-"http://www.test.de/test#game79"
+-"http://www.test.de/test#game80"
+-"http://www.test.de/test#game81"
+-"http://www.test.de/test#game82"
+-"http://www.test.de/test#game83"
+-"http://www.test.de/test#game84"
+-"http://www.test.de/test#game85"
+-"http://www.test.de/test#game86"
+-"http://www.test.de/test#game87"
+-"http://www.test.de/test#game88"
+-"http://www.test.de/test#game89"
+-"http://www.test.de/test#game90"
+-"http://www.test.de/test#game91"
+-"http://www.test.de/test#game92"
+-"http://www.test.de/test#game93"
+-"http://www.test.de/test#game94"
+-"http://www.test.de/test#game95"
+-"http://www.test.de/test#game96"
+-"http://www.test.de/test#game97"
+-"http://www.test.de/test#game98"
+-"http://www.test.de/test#game99"
+
Added: trunk/examples/krk/ZERO.txt
===================================================================
--- trunk/examples/krk/ZERO.txt (rev 0)
+++ trunk/examples/krk/ZERO.txt 2008-03-13 16:48:24 UTC (rev 709)
@@ -0,0 +1,57 @@
++"http://www.test.de/test#game1"
++"http://www.test.de/test#game10"
++"http://www.test.de/test#game11"
++"http://www.test.de/test#game12"
++"http://www.test.de/test#game13"
++"http://www.test.de/test#game14"
++"http://www.test.de/test#game15"
++"http://www.test.de/test#game16"
++"http://www.test.de/test#game17"
++"http://www.test.de/test#game18"
++"http://www.test.de/test#game19"
++"http://www.test.de/test#game2"
++"http://www.test.de/test#game20"
++"http://www.test.de/test#game21"
++"http://www.test.de/test#game22"
++"http://www.test.de/test#game23"
++"http://www.test.de/test#game24"
++"http://www.test.de/test#game25"
++"http://www.test.de/test#game26"
++"http://www.test.de/test#game27"
++"http://www.test.de/test#game3"
++"http://www.test.de/test#game4"
++"http://www.test.de/test#game5"
++"http://www.test.de/test#game6"
++"http://www.test.de/test#game7"
++"http://www.test.de/test#game8"
++"http://www.test.de/test#game9"
+
+
+-"http://www.test.de/test#game1"
+-"http://www.test.de/test#game10"
+-"http://www.test.de/test#game11"
+-"http://www.test.de/test#game12"
+-"http://www.test.de/test#game13"
+-"http://www.test.de/test#game14"
+-"http://www.test.de/test#game15"
+-"http://www.test.de/test#game16"
+-"http://www.test.de/test#game17"
+-"http://www.test.de/test#game18"
+-"http://www.test.de/test#game19"
+-"http://www.test.de/test#game2"
+-"http://www.test.de/test#game20"
+-"http://www.test.de/test#game21"
+-"http://www.test.de/test#game22"
+-"http://www.test.de/test#game23"
+-"http://www.test.de/test#game24"
+-"http://www.test.de/test#game25"
+-"http://www.test.de/test#game26"
+-"http://www.test.de/test#game27"
+-"http://www.test.de/test#game3"
+-"http://www.test.de/test#game4"
+-"http://www.test.de/test#game5"
+-"http://www.test.de/test#game6"
+-"http://www.test.de/test#game7"
+-"http://www.test.de/test#game8"
+-"http://www.test.de/test#game9"
+
Added: trunk/examples/krk/krkopt.data
===================================================================
--- trunk/examples/krk/krkopt.data (rev 0)
+++ trunk/examples/krk/krkopt.data 2008-03-13 16:48:24 UTC (rev 709)
@@ -0,0 +1,105 @@
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Added: trunk/examples/krk/krkopt_large.data
===================================================================
--- trunk/examples/krk/krkopt_large.data (rev 0)
+++ trunk/examples/krk/krkopt_large.data 2008-03-13 16:48:24 UTC (rev 709)
@@ -0,0 +1,28056 @@
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[truncated message content] |
|
From: <ku...@us...> - 2008-03-13 08:12:02
|
Revision: 708
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=708&view=rev
Author: kurzum
Date: 2008-03-13 01:11:59 -0700 (Thu, 13 Mar 2008)
Log Message:
-----------
intermediate working owl, still missing conf files
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/examples/KRK.java
Modified: trunk/src/dl-learner/org/dllearner/examples/KRK.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/examples/KRK.java 2008-03-13 06:55:13 UTC (rev 707)
+++ trunk/src/dl-learner/org/dllearner/examples/KRK.java 2008-03-13 08:11:59 UTC (rev 708)
@@ -5,8 +5,8 @@
import java.io.FileNotFoundException;
import java.io.FileReader;
import java.net.URI;
-import java.util.HashMap;
import java.util.Iterator;
+import java.util.LinkedList;
import java.util.SortedSet;
import java.util.StringTokenizer;
import java.util.TreeSet;
@@ -18,9 +18,23 @@
import org.dllearner.core.owl.NamedClass;
import org.dllearner.core.owl.ObjectProperty;
import org.dllearner.core.owl.ObjectPropertyAssertion;
+import org.dllearner.core.owl.ObjectPropertyDomainAxiom;
+import org.dllearner.core.owl.ObjectPropertyRangeAxiom;
+import org.dllearner.core.owl.SubClassAxiom;
+import org.dllearner.core.owl.SubObjectPropertyAxiom;
+import org.dllearner.core.owl.SymmetricObjectPropertyAxiom;
import org.dllearner.core.owl.TransitiveObjectPropertyAxiom;
import org.dllearner.reasoning.OWLAPIReasoner;
+/*
+ * Structure
+ *
+ *
+ *
+ *
+ * */
+
+
public class KRK {
// REMEMBER
@@ -28,71 +42,48 @@
// RANKS are numbers
private static URI ontologyURI = URI.create("http://www.test.de/test");
- static SortedSet<String> fileSet;
- static SortedSet<String> rankSet;
- static SortedSet<String> classSet;
- static HashMap<String,SortedSet<String>> classToInd;
+ static SortedSet<String> fileSet = new TreeSet<String>();;
+ static SortedSet<String> rankSet = new TreeSet<String>();;
+ static SortedSet<String> classSet = new TreeSet<String>();;
+ static LinkedList<String> words ;
+ static KB kb;
+
+
+ static NamedClass Game =getAtomicConcept("Game");
+ static NamedClass WKing = getAtomicConcept("WKing");
+ static NamedClass WRook = getAtomicConcept("WRook");
+ static NamedClass BKing = getAtomicConcept("BKing");
+ static NamedClass File = getAtomicConcept("File");
+ static NamedClass Rank = getAtomicConcept("Rank");
+ static NamedClass Piece = getAtomicConcept("Piece");
+
+ static ObjectProperty hasRank= getRole("hasRank");
+ static ObjectProperty hasFile= getRole("hasFile");
+ static ObjectProperty hasPiece= getRole("hasPiece");
+ static ObjectProperty lessThan= getRole("strictLessThan");
+
+
+ //static HashMap<String,SortedSet<String>> classToInd;
/**
* @param args
*/
public static void main(String[] args) {
- classToInd = new HashMap<String,SortedSet<String>>();
- fileSet = new TreeSet<String>();
- rankSet = new TreeSet<String>();
- classSet = new TreeSet<String>();
- KB kb=new KB();
-
+ //classToInd = new HashMap<String,SortedSet<String>>();
+ initVarsAndClasses();
+ initBackgroundRoles();
+
- fileSet.add("a"); fileSet.add("b"); fileSet.add("c"); fileSet.add("d"); fileSet.add("e"); fileSet.add("f"); fileSet.add("g"); fileSet.add("h");
+ Individual gameind;
+ Individual wkingind;
+ Individual wrookind;
+ Individual bkingind;
- for (int count = 1; count < 9; count++) {
- rankSet.add("f"+count);
- }
- NamedClass[] nc=new NamedClass[]{
- getAtomicConcept("Game"),
- getAtomicConcept("WKing"),
- getAtomicConcept("WRook"),
- getAtomicConcept("BKing")};
- ObjectProperty rank= getRole("hasRank");
- ObjectProperty file= getRole("hasFile");
- ObjectProperty piece= getRole("hasPiece");
- ObjectProperty lessThan= getRole("strictLessThan");
- //ObjectProperty rank= getRole("hasRank");
-
- Individual game;
- Individual wking;
- Individual wrook;
- Individual bking;
-
- kb.addRBoxAxiom(new TransitiveObjectPropertyAxiom(lessThan));
-
- Iterator<String> it = fileSet.iterator();
- Individual current = getIndividual(it.next());
- Individual next;
- while (it.hasNext()){
- next=getIndividual(it.next());
- kb.addABoxAxiom(new ObjectPropertyAssertion(lessThan,current,next));
- current=next;
-
- }
-
- it = rankSet.iterator();
- current = getIndividual(it.next());
- next=null;
- while (it.hasNext()){
- next=getIndividual(it.next());
- kb.addABoxAxiom(new ObjectPropertyAssertion(lessThan,current,next));
- current=next;
-
- }
-
-
String fileIn = "examples/krk/krkopt.data";
- // Datei öffnen
+ // Datei \xF6ffnen
BufferedReader in = null;
try {
in = new BufferedReader(new FileReader(fileIn));
@@ -110,36 +101,35 @@
{ x++;
//if(x % 3000 == 0 ) System.out.println("Currently at line "+x);
ar = tokenize(line);
- game = getIndividual("game"+x);
- wking = getIndividual("wking"+x);
- wrook = getIndividual("wrook"+x);
- bking = getIndividual("bking"+x);
+ gameind = getIndividual("game"+x);
+ wkingind = getIndividual("wking"+x);
+ wrookind = getIndividual("wrook"+x);
+ bkingind = getIndividual("bking"+x);
classSet.add(ar[6]);
- //ar[0]);
-
+
// CLASSES
- kb.addABoxAxiom(new ClassAssertionAxiom(nc[0],game));
- kb.addABoxAxiom(new ClassAssertionAxiom(getAtomicConcept(ar[6]),game));
- kb.addABoxAxiom(new ClassAssertionAxiom(nc[1],wking));
- kb.addABoxAxiom(new ClassAssertionAxiom(nc[2],wrook));
- kb.addABoxAxiom(new ClassAssertionAxiom(nc[3],bking));
+ kb.addABoxAxiom(new ClassAssertionAxiom(Game,gameind));
+ kb.addABoxAxiom(new ClassAssertionAxiom(getAtomicConcept(ar[6]),gameind));
+ kb.addABoxAxiom(new ClassAssertionAxiom(WKing,wkingind));
+ kb.addABoxAxiom(new ClassAssertionAxiom(WRook,wrookind));
+ kb.addABoxAxiom(new ClassAssertionAxiom(BKing,bkingind));
//PROPERTIES
- kb.addABoxAxiom(new ObjectPropertyAssertion(piece,game,wking));
- kb.addABoxAxiom(new ObjectPropertyAssertion(piece,game,wrook));
- kb.addABoxAxiom(new ObjectPropertyAssertion(piece,game,bking));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(hasPiece,gameind,wkingind));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(hasPiece,gameind,wrookind));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(hasPiece,gameind,bkingind));
- kb.addABoxAxiom(new ObjectPropertyAssertion(rank,wking,getIndividual(ar[0])));
- kb.addABoxAxiom(new ObjectPropertyAssertion(file,wking,getIndividual("f"+ar[1])));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(hasRank,wkingind,getIndividual(ar[0])));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(hasFile,wkingind,getIndividual("f"+ar[1])));
- kb.addABoxAxiom(new ObjectPropertyAssertion(rank,wrook,getIndividual(ar[2])));
- kb.addABoxAxiom(new ObjectPropertyAssertion(file,wrook,getIndividual("f"+ar[3])));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(hasRank,wrookind,getIndividual(ar[2])));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(hasFile,wrookind,getIndividual("f"+ar[3])));
- kb.addABoxAxiom(new ObjectPropertyAssertion(rank,bking,getIndividual(ar[4])));
- kb.addABoxAxiom(new ObjectPropertyAssertion(file,bking,getIndividual("f"+ar[5])));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(hasRank,bkingind,getIndividual(ar[4])));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(hasFile,bkingind,getIndividual("f"+ar[5])));
//kb.addABoxAxiom(new ClassAssertionAxiom(new NamedClass("Game"),new Individual(names[0]+(x++))));
//kb.addABoxAxiom(new ClassAssertionAxiom(new NamedClass("Game"),new Individual(names[0]+(x++))));
@@ -156,6 +146,108 @@
}catch (Exception e) {e.printStackTrace();}
System.out.println("Done");
+ }//end main
+
+
+ static void initVarsAndClasses(){
+ kb=new KB();
+ fileSet.add("a"); fileSet.add("b"); fileSet.add("c"); fileSet.add("d"); fileSet.add("e"); fileSet.add("f"); fileSet.add("g"); fileSet.add("h");
+ for (int count = 1; count < 9; count++) {
+ rankSet.add("r"+count);
+ }
+
+ // all sub of piece
+ kb.addTBoxAxiom(new SubClassAxiom(WKing,Piece));
+ kb.addTBoxAxiom(new SubClassAxiom(WRook,Piece));
+ kb.addTBoxAxiom(new SubClassAxiom(BKing,Piece));
+
+ // Classes for files
+ Iterator<String> it = fileSet.iterator();
+ Individual next;
+ while (it.hasNext()){
+ next=getIndividual(it.next());
+ kb.addABoxAxiom(new ClassAssertionAxiom(File, next));
+ }
+
+ // Classes for rank
+ it = rankSet.iterator();
+ while (it.hasNext()){
+ next=getIndividual(it.next());
+ kb.addABoxAxiom(new ClassAssertionAxiom(Rank, next));
+ }
+
+
+ }//end init
+
+
+ static void initBackgroundRoles()
+ {
+
+ //TODO test
+ kb.addRBoxAxiom(new TransitiveObjectPropertyAxiom(lessThan));
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(lessThan,Rank));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(lessThan, Rank));
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(lessThan, File));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(lessThan, File));
+ //TODO test
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(hasRank, Piece));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(hasRank, Rank));
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(hasFile, Piece));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(hasFile, File));
+ kb.addRBoxAxiom(new ObjectPropertyDomainAxiom(hasPiece, Game));
+ kb.addRBoxAxiom(new ObjectPropertyRangeAxiom(hasPiece, Piece));
+
+ // assigning lessthan to file
+ Iterator<String> it = fileSet.iterator();
+ Individual current = getIndividual(it.next());
+ Individual next;
+ while (it.hasNext()){
+ next=getIndividual(it.next());
+ kb.addABoxAxiom(new ObjectPropertyAssertion(lessThan,current,next));
+ current=next;
+
+ }
+ // assigning lessthan to rank
+ it = rankSet.iterator();
+ current = getIndividual(it.next());
+ next=null;
+ while (it.hasNext()){
+ next=getIndividual(it.next());
+ kb.addABoxAxiom(new ObjectPropertyAssertion(lessThan,current,next));
+ current=next;
+
+ }
+
+
+
+
+ //new PropertyRangeAxiom(rank, (PropertyRange) nc[5]);
+
+ String str="hasDistanceOf";
+ String str2="hasDistanceLessThan";
+ //ObjectProperty tmp;
+ String[] rankarray=new String[8];
+ String[] filearray=new String[8];
+ rankSet.toArray(rankarray);
+ fileSet.toArray(filearray);
+
+ // assigning has DistanceOf to Rank and File
+ for (int count = 0; count < filearray.length; count++) {
+ for (int inner = count+1 , dist = 1; inner < filearray.length; inner++, dist++) {
+ //ObjectProperty op = getRole(str+inner);
+ kb.addABoxAxiom(getRoleAssertion( str+dist, rankarray[count], rankarray[inner]));
+ kb.addABoxAxiom(getRoleAssertion( str+dist, filearray[count], filearray[inner]));
+
+ }
+ }
+ //make it symmetric + subproperty of
+ for (int count = 1; count < 8; count++) {
+ kb.addRBoxAxiom(new SymmetricObjectPropertyAxiom(getRole(str+count)));
+ kb.addRBoxAxiom(new SubObjectPropertyAxiom(getRole(str+count),getRole(str2+(count+1))));
+ kb.addRBoxAxiom(new SubObjectPropertyAxiom(getRole(str2+count),getRole(str2+(count+1))));
+ }
+
+
}
public static String[] tokenize (String s) {
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jen...@us...> - 2008-03-13 06:55:17
|
Revision: 707
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=707&view=rev
Author: jenslehmann
Date: 2008-03-12 23:55:13 -0700 (Wed, 12 Mar 2008)
Log Message:
-----------
- wrote script for training on one and testing on another conf file
- small algorithm improvements
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java
trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java
trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java
trunk/src/dl-learner/org/dllearner/learningproblems/ScoreTwoValued.java
trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java
Added Paths:
-----------
trunk/src/dl-learner/org/dllearner/utilities/TestValidation.java
Modified: trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java 2008-03-12 23:15:31 UTC (rev 706)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java 2008-03-13 06:55:13 UTC (rev 707)
@@ -267,7 +267,7 @@
long lastReductionTime = System.nanoTime();
// try a traversal after 100 seconds
long traversalInterval = 1000l * 1000000000l;
- long reductionInterval = 100l * 1000000000l;
+ long reductionInterval = 300l * 1000000000l;
long currentTime;
while(!solutionFound && !stop) {
Modified: trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java 2008-03-12 23:15:31 UTC (rev 706)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java 2008-03-13 06:55:13 UTC (rev 707)
@@ -21,7 +21,8 @@
import java.util.List;
-import org.dllearner.core.owl.DatatypeValueRestriction;
+import org.dllearner.core.owl.BooleanValueRestriction;
+import org.dllearner.core.owl.DatatypeSomeRestriction;
import org.dllearner.core.owl.Description;
import org.dllearner.core.owl.Thing;
import org.dllearner.utilities.ConceptComparator;
@@ -78,7 +79,7 @@
private double expansionPenaltyFactor;
private double gainBonusFactor;
private double nodeChildPenalty = 0.0001;
- private double startNodeBonus = 0.8;
+ private double startNodeBonus = 1.0;
// examples
private int nrOfNegativeExamples;
@@ -144,11 +145,16 @@
// do not count TOP symbols (in particular in ALL r.TOP and EXISTS r.TOP)
// as they provide no extra information
if(description instanceof Thing)
- bonus = 1;
+ bonus = 2;
+ if(description instanceof BooleanValueRestriction)
+ bonus = -1;
+
// some bonus for doubles because they are already penalised by length 3
- if(description instanceof DatatypeValueRestriction)
- bonus = 1;
+ if(description instanceof DatatypeSomeRestriction) {
+// System.out.println(description);
+ bonus = 3;
+ }
List<Description> children = description.getChildren();
for(Description child : children) {
Modified: trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java 2008-03-12 23:15:31 UTC (rev 706)
+++ trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java 2008-03-13 06:55:13 UTC (rev 707)
@@ -112,6 +112,16 @@
// list of all "hasProperty" test
private static Set<String> tests = new TreeSet<String>();
+ // we ignore the ames test since its distribution in PTE-2 is so
+ // different from the training substances that a different testing
+ // strategy was probably in use
+ private static boolean ignoreAmes = false;
+ private static boolean ignoreSalmonella = false;;
+ private static boolean ignoreCytogenCa = false;
+ // if true we learn carcinogenic, if false we learn non-carcinogenic
+ private static boolean learnCarcinogenic = true;
+ private static boolean useNewGroups = true;
+
/**
* @param args
* No arguments supported.
@@ -168,8 +178,10 @@
// define properties including domain and range
String kbString = "DPDOMAIN(" + getURI2("charge") + ") = " + getURI2("Atom") + ".\n";
kbString += "DPRANGE(" + getURI2("charge") + ") = DOUBLE.\n";
- kbString += "DPDOMAIN(" + getURI2("amesTestPositive") + ") = " + getURI2("Compound") + ".\n";
- kbString += "DPRANGE(" + getURI2("amesTestPositive") + ") = BOOLEAN.\n";
+ if(!ignoreAmes) {
+ kbString += "DPDOMAIN(" + getURI2("amesTestPositive") + ") = " + getURI2("Compound") + ".\n";
+ kbString += "DPRANGE(" + getURI2("amesTestPositive") + ") = BOOLEAN.\n";
+ }
kbString += "OPDOMAIN(" + getURI2("hasAtom") + ") = " + getURI2("Compound") + ".\n";
kbString += "OPRANGE(" + getURI2("hasAtom") + ") = " + getURI2("Atom") + ".\n";
kbString += "OPDOMAIN(" + getURI2("hasBond") + ") = " + getURI2("Compound") + ".\n";
@@ -177,7 +189,10 @@
kbString += "OPDOMAIN(" + getURI2("inBond") + ") = " + getURI2("Bond") + ".\n";
kbString += "OPRANGE(" + getURI2("inBond") + ") = " + getURI2("Atom") + ".\n";
kbString += "OPDOMAIN(" + getURI2("hasStructure") + ") = " + getURI2("Compound") + ".\n";
- kbString += "OPRANGE(" + getURI2("hasStructure") + ") = " + getURI2("Structure") + ".\n";
+ kbString += "OPRANGE(" + getURI2("hasStructure") + ") = " + getURI2("Structure") + ".\n";
+ kbString += getURI2("Di") + " SUB " + getURI2("Structure") + ".\n";
+ kbString += getURI2("Halide") + " SUB " + getURI2("Structure") + ".\n";
+ kbString += getURI2("Ring") + " SUB " + getURI2("Structure") + ".\n";
KB kb2 = KBParser.parseKBFile(kbString);
kb.addKB(kb2);
@@ -195,7 +210,7 @@
// are in ames.pl [the rest is negative in Prolog by CWA], so
// we add negative test results here)
for(String compound : compounds) {
- if(!compoundsAmes.contains(compound)) {
+ if(!ignoreAmes && !compoundsAmes.contains(compound)) {
BooleanDatatypePropertyAssertion ames = getBooleanDatatypePropertyAssertion(compound, "amesTestPositive", false);
kb.addAxiom(ames);
}
@@ -255,15 +270,19 @@
// generating test examples for PTE-1
// => put all in one file, because they were used as training for PTE-2
- // File confPTE1File = new File("examples/carcinogenesis/testpte1.conf");
- // Files.clearFile(confPTE1File);
+ File confPTE1File = new File("examples/carcinogenesis/testpte1.conf");
+ Files.clearFile(confPTE1File);
File testPTE1Positives = new File(prologDirectory + "pte1.f");
File testPTE1Negatives = new File(prologDirectory + "pte1.n");
List<Individual> posPTE1Examples = getExamples(testPTE1Positives);
List<Individual> negPTE1Examples = getExamples(testPTE1Negatives);
appendPosExamples(confTrainFile, posPTE1Examples);
- appendNegExamples(confTrainFile, negPTE1Examples);
+ appendNegExamples(confTrainFile, negPTE1Examples);
+ Files.clearFile(confPTE1File);
+ Files.appendFile(confPTE1File, "import(\"pte.owl\");\nreasoner=fastInstanceChecker;\n\n");
+ appendPosExamples(confPTE1File, posPTE1Examples);
+ appendNegExamples(confPTE1File, negPTE1Examples);
// create a PTE-2 test file
File confPTE2File = new File("examples/carcinogenesis/testpte2.conf");
@@ -288,10 +307,12 @@
// remaining stuff or use closed world assumption in the
// TBox dematerialisation later on
if(headName.equals("ames")) {
+ if(!ignoreAmes) {
String compoundName = head.getArgument(0).toPLString();
BooleanDatatypePropertyAssertion ames = getBooleanDatatypePropertyAssertion(compoundName, "amesTestPositive", true);
axioms.add(ames);
compoundsAmes.add(compoundName);
+ }
} else if (headName.equals("atm")) {
String compoundName = head.getArgument(0).toPLString();
String atomName = head.getArgument(1).toPLString();
@@ -350,48 +371,67 @@
} else if (headName.equals("has_property")) {
String compoundName = head.getArgument(0).toPLString();
String testName = head.getArgument(1).toPLString();
- String resultStr = head.getArgument(2).toPLString();
- boolean testResult = (resultStr.equals("p")) ? true : false;
-
- // create a new datatype property if it does not exist already
- if(!tests.contains(testName)) {
- String axiom1 = "DPDOMAIN(" + getURI2(testName) + ") = " + getURI2("Compound") + ".\n";
- String axiom2 = "DPRANGE(" + getURI2(testName) + ") = BOOLEAN.\n";
- KB kb = KBParser.parseKBFile(axiom1 + axiom2);
- axioms.addAll(kb.getAxioms());
+ if(!(ignoreSalmonella && testName.equals("salmonella"))
+ && !(ignoreCytogenCa && testName.equals("cytogen_ca"))) {
+ String resultStr = head.getArgument(2).toPLString();
+ boolean testResult = (resultStr.equals("p")) ? true : false;
+
+ // create a new datatype property if it does not exist already
+ if(!tests.contains(testName)) {
+ String axiom1 = "DPDOMAIN(" + getURI2(testName) + ") = " + getURI2("Compound") + ".\n";
+ String axiom2 = "DPRANGE(" + getURI2(testName) + ") = BOOLEAN.\n";
+ KB kb = KBParser.parseKBFile(axiom1 + axiom2);
+ axioms.addAll(kb.getAxioms());
+ }
+ // create an axiom with the test result
+ DatatypePropertyAssertion dpa = getBooleanDatatypePropertyAssertion(compoundName, testName,
+ testResult);
+ axioms.add(dpa);
}
- // create an axiom with the test result
- DatatypePropertyAssertion dpa = getBooleanDatatypePropertyAssertion(compoundName, testName,
- testResult);
- axioms.add(dpa);
// either parse this or ashby_alert - not both - ashby_alert contains
// all information in ind already
} else if (headName.equals("ind") || headName.equals("ring_no")) {
+ // parse this only if the new groups are not parsed
+// if(!useNewGroups) {
String compoundName = head.getArgument(0).toPLString();
String structureName = head.getArgument(1).toPLString();
- int count = Integer.parseInt(head.getArgument(2).toPLString());
+// int count = Integer.parseInt(head.getArgument(2).toPLString());
// upper case first letter
String structureClass = structureName.substring(0,1).toUpperCase() + structureName.substring(1);;
String structureInstance = structureName + "-" + structureNr;
- if (!bondTypes.contains(structureClass)) {
- NamedClass subClass = getAtomicConcept(structureClass);
- SubClassAxiom sc = new SubClassAxiom(subClass, getAtomicConcept("Structure"));
- axioms.add(sc);
- structureTypes.add(structureClass);
- }
+ addStructureSubclass(axioms, structureClass);
- for(int i=0; i<count; i++) {
+// for(int i=0; i<count; i++) {
ObjectPropertyAssertion op = getRoleAssertion("hasStructure", compoundName, structureInstance);
axioms.add(op);
// make e.g. halide10-382 instance of Bond-3
ClassAssertionAxiom ca = getConceptAssertion(structureClass, structureInstance);
axioms.add(ca);
structureNr++;
- }
+// }
+// }
} else if (headName.equals("ashby_alert")) {
// ... currently ignored ...
} else if (newGroups.contains(headName)) {
+ if(useNewGroups) {
+ String compoundName = head.getArgument(0).toPLString();
+ String structureName = headName;
+// int count = Integer.parseInt(head.getArgument(2).toPLString());
+ // upper case first letter
+ String structureClass = structureName.substring(0,1).toUpperCase() + structureName.substring(1);;
+ String structureInstance = structureName + "-" + structureNr;
+
+ addStructureSubclass(axioms, structureClass);
+
+// for(int i=0; i<count; i++) {
+ ObjectPropertyAssertion op = getRoleAssertion("hasStructure", compoundName, structureInstance);
+ axioms.add(op);
+ ClassAssertionAxiom ca = getConceptAssertion(structureClass, structureInstance);
+ axioms.add(ca);
+ structureNr++;
+// }
+ }
} else {
// print clauses which are not supported yet
System.out.println("unsupported clause");
@@ -402,6 +442,23 @@
return axioms;
}
+ private static void addStructureSubclass(List<Axiom> axioms, String structureClass) {
+ // build in more fine-grained subclasses e.g. Di+number is subclass of Di
+ if (!structureTypes.contains(structureClass)) {
+ NamedClass nc = getAtomicConcept("Structure");
+ if(structureClass.contains("Di"))
+ nc = getAtomicConcept("Di");
+ else if(structureClass.contains("ring") || structureClass.contains("Ring"))
+ nc = getAtomicConcept("Ring");
+ else if(structureClass.contains("halide") || structureClass.contains("Halide"))
+ nc = getAtomicConcept("Halide");
+ NamedClass subClass = getAtomicConcept(structureClass);
+ SubClassAxiom sc = new SubClassAxiom(subClass, nc);
+ axioms.add(sc);
+ structureTypes.add(structureClass);
+ }
+ }
+
// takes a *.f or *.n file as input and returns the
// contained examples
private static List<Individual> getExamples(File file) throws FileNotFoundException, IOException, ParseException {
@@ -419,7 +476,10 @@
private static void appendPosExamples(File file, List<Individual> examples) {
StringBuffer content = new StringBuffer();
for(Individual example : examples) {
- content.append("+\""+example.toString()+"\"\n");
+ if(learnCarcinogenic)
+ content.append("+\""+example.toString()+"\"\n");
+ else
+ content.append("-\""+example.toString()+"\"\n");
}
Files.appendFile(file, content.toString());
}
@@ -427,7 +487,10 @@
private static void appendNegExamples(File file, List<Individual> examples) {
StringBuffer content = new StringBuffer();
for(Individual example : examples) {
- content.append("-\""+example.toString()+"\"\n");
+ if(learnCarcinogenic)
+ content.append("-\""+example.toString()+"\"\n");
+ else
+ content.append("+\""+example.toString()+"\"\n");
}
Files.appendFile(file, content.toString());
}
@@ -582,6 +645,7 @@
* <p>Positives (19): <br />
* <ul>
* <li>t3 (SE+3NE): http://ntp.niehs.nih.gov/index.cfm?objectid=BCACAFD4-123F-7908-7B521E4F665EFBD9</li>
+ * <li>t4 (3CE+NE) - contradicts IJCAI-97 paper and should probably be case 75-52-5 instead of 75-52-8: http://ntp.niehs.nih.gov/index.cfm?objectid=BCE49084-123F-7908-7BE127F7AF1FFBB5</li>
* <li>t5: paper</li>
* <li>t7: paper</li>
* <li>t8: paper</li>
@@ -607,7 +671,7 @@
* <ul>
* <li>t1 (4NE): http://ntp.niehs.nih.gov/index.cfm?objectid=BD9FF53C-123F-7908-7B123DAE0A25B122 </li>
* <li>t2 (4NE): http://ntp.niehs.nih.gov/index.cfm?objectid=BCF8651E-123F-7908-7B21DD5ED83CD0FF </li>
- * <li>t4: paper</li>
+ * <li><strike>t4: paper</strike></li>
* <li>t6: paper</li>
* <li>t11: paper</li>
* <li>t13 (4NE): http://ntp.niehs.nih.gov/index.cfm?objectid=BD136ED6-123F-7908-7B619EE79F2FD062</li>
@@ -623,21 +687,47 @@
* <li>t29: probably a negative (see http://ntp.niehs.nih.gov/index.cfm?objectid=BD855EA1-123F-7908-7B573FC3C08188DC) but
* no tests directly for this substance</li>
* </ul>
+ *
+ * <p>The following examples are probably not part of the IJCAI PTE-2 challenge
+ * (reports younger than 1998):
+ * <ul>
+ * <li>pos: t21 (5/99), t25 (9/04), t30(10/01)</li>
+ * <li>neg: t26 (5/99), t27 (05/01), t28 (05/00), t29 (09/02)</li>
+ * </ul>
* </p>
+ * </p>
* @return A string for all examples as used in the conf file.
*/
public static String getPTE2Examples() {
- String[] pos = new String[] {"t3","t5","t7","t8","t9","t10","t12",
- "t14","t15","t16","t18","t19","t20","t21","t22","t23","t24",
- "t25","t30"};
- String[] neg = new String[] {"t1", "t2", "t4", "t6", "t11", "t13",
- "t17","t26","t27","t28"};
+ String[] pos = new String[] {"t3","t4","t5","t7","t8",
+ "t9",
+ "t10","t12",
+ "t14","t15","t16","t18","t19","t20",
+ "t21",
+ "t22",
+ "t23",
+ "t24",
+ "t25",
+ "t30"};
+ String[] neg = new String[] {"t1", "t2",
+ "t6", "t11", "t13",
+ "t17","t26","t27",
+ "t28","t29"
+ };
String ret = "";
- for(String posEx : pos)
- ret += "+" + getURI2(posEx) + "\n";
- for(String negEx : neg)
- ret += "-" + getURI2(negEx) + "\n";
+ for(String posEx : pos) {
+ if(learnCarcinogenic)
+ ret += "+" + getURI2(posEx) + "\n";
+ else
+ ret += "-" + getURI2(posEx) + "\n";
+ }
+ for(String negEx : neg) {
+ if(learnCarcinogenic)
+ ret += "-" + getURI2(negEx) + "\n";
+ else
+ ret += "+" + getURI2(negEx) + "\n";
+ }
return ret;
}
Modified: trunk/src/dl-learner/org/dllearner/learningproblems/ScoreTwoValued.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/learningproblems/ScoreTwoValued.java 2008-03-12 23:15:31 UTC (rev 706)
+++ trunk/src/dl-learner/org/dllearner/learningproblems/ScoreTwoValued.java 2008-03-13 06:55:13 UTC (rev 707)
@@ -54,9 +54,9 @@
String str = "";
str += "score: " + score + "\n";
str += "accuracy: " + (1 + classificationScore) + "\n";
- str += "posAsPos: " + posAsPos + "\n";
- str += "positive examples classified as negative: " + posAsNeg + "\n";
- str += "negative examples classified as positive: " + negAsPos + "\n";
+ str += "posAsPos (" + posAsPos.size() + "): " + posAsPos + "\n";
+ str += "positive examples classified as negative (" + posAsNeg.size() + "): " + posAsNeg + "\n";
+ str += "negative examples classified as positive (" + negAsPos.size() + "): " + negAsPos + "\n";
return str;
}
Modified: trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java 2008-03-12 23:15:31 UTC (rev 706)
+++ trunk/src/dl-learner/org/dllearner/refinementoperators/RhoDRDown.java 2008-03-13 06:55:13 UTC (rev 707)
@@ -286,7 +286,9 @@
ConceptTransformation.cleanConceptNonRecursive(mc);
ConceptTransformation.transformToOrderedNegationNormalFormNonRecursive(mc, conceptComparator);
- refinements.add(mc);
+ // check whether the intersection is OK (sanity checks), then add it
+ if(checkIntersection(mc))
+ refinements.add(mc);
}
}
@@ -431,6 +433,17 @@
}
}
+ // check for double datatype properties
+ if(c instanceof DatatypeSomeRestriction &&
+ description instanceof DatatypeSomeRestriction) {
+ DataRange dr = ((DatatypeSomeRestriction)c).getDataRange();
+ DataRange dr2 = ((DatatypeSomeRestriction)description).getDataRange();
+ // it does not make sense to have statements like height >= 1.8 AND height >= 1.7
+ if((dr instanceof DoubleMaxValue && dr2 instanceof DoubleMaxValue)
+ ||(dr instanceof DoubleMinValue && dr2 instanceof DoubleMinValue))
+ skip = true;
+ }
+
// perform a disjointness check when named classes are added;
// this can avoid a lot of superfluous computation in the algorithm e.g.
// when A1 looks good, so many refinements of the form (A1 OR (A2 AND A3))
@@ -465,6 +478,33 @@
return refinements;
}
+ // when a child of an intersection is refined and reintegrated into the
+ // intersection, we can perform some sanity checks;
+ // method returns true if everything is OK and false otherwise
+ private boolean checkIntersection(Intersection intersection) {
+ // rule 1: max. restrictions at most once
+ boolean maxDoubleOccurence = false;
+ // rule 2: min restrictions at most once
+ boolean minDoubleOccurence = false;
+ for(Description child : intersection.getChildren()) {
+ if(child instanceof DatatypeSomeRestriction) {
+ DataRange dr = ((DatatypeSomeRestriction)child).getDataRange();
+ if(dr instanceof DoubleMaxValue) {
+ if(maxDoubleOccurence)
+ return false;
+ else
+ maxDoubleOccurence = true;
+ } else if(dr instanceof DoubleMinValue) {
+ if(minDoubleOccurence)
+ return false;
+ else
+ minDoubleOccurence = true;
+ }
+ }
+ }
+ return true;
+ }
+
private void computeTopRefinements(int maxLength) {
computeTopRefinements(maxLength, null);
}
Added: trunk/src/dl-learner/org/dllearner/utilities/TestValidation.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/utilities/TestValidation.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/utilities/TestValidation.java 2008-03-13 06:55:13 UTC (rev 707)
@@ -0,0 +1,75 @@
+/**
+ * Copyright (C) 2007-2008, Jens Lehmann
+ *
+ * This file is part of DL-Learner.
+ *
+ * DL-Learner is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * DL-Learner is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ *
+ */
+package org.dllearner.utilities;
+
+import java.io.File;
+import java.util.Set;
+
+import org.apache.log4j.ConsoleAppender;
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
+import org.apache.log4j.SimpleLayout;
+import org.dllearner.cli.Start;
+import org.dllearner.core.ComponentInitException;
+import org.dllearner.core.LearningProblem;
+import org.dllearner.core.ReasoningService;
+import org.dllearner.core.Score;
+import org.dllearner.core.owl.Description;
+import org.dllearner.core.owl.Individual;
+
+/**
+ * @author Jens Lehmann
+ *
+ */
+public class TestValidation {
+
+ private static Logger logger = Logger.getRootLogger();
+
+ public static void main(String args[]) throws ComponentInitException {
+
+ // create logger (a simple logger which outputs
+ // its messages to the console)
+ SimpleLayout layout = new SimpleLayout();
+ ConsoleAppender consoleAppender = new ConsoleAppender(layout);
+ logger.removeAllAppenders();
+ logger.addAppender(consoleAppender);
+ logger.setLevel(Level.DEBUG);
+
+ String filenameTrain = args[0];
+ String filenameTest = args[1];
+
+ Start start = new Start(new File(filenameTrain));
+ start.start(false);
+ Description solution = start.getLearningAlgorithm().getBestSolution();
+
+ logger.setLevel(Level.WARN);
+
+ Start startTest = new Start(new File(filenameTest));
+ ReasoningService rs = startTest.getReasoningService();
+ LearningProblem lp = startTest.getLearningProblem();
+
+ Set<Individual> result = rs.retrieval(solution);
+ System.out.println("retrieval result: " + result);
+
+ Score score = lp.computeScore(solution);
+ System.out.println(score);
+ }
+
+}
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|
|
From: <ton...@us...> - 2008-03-12 23:15:37
|
Revision: 706
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=706&view=rev
Author: tonytacker
Date: 2008-03-12 16:15:31 -0700 (Wed, 12 Mar 2008)
Log Message:
-----------
I reduced thread priorities to ensure main-thread (GUI) is fastest inside. All others have some lower levels. Tree-Window works now, but only 1st level of it. Means you cann't look at 2nd level of tree. It will be later integrated.
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/gui/ThreadRun.java
trunk/src/dl-learner/org/dllearner/gui/ThreadStatistics.java
trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java
Modified: trunk/src/dl-learner/org/dllearner/gui/ThreadRun.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/ThreadRun.java 2008-03-12 19:25:45 UTC (rev 705)
+++ trunk/src/dl-learner/org/dllearner/gui/ThreadRun.java 2008-03-12 23:15:31 UTC (rev 706)
@@ -40,6 +40,7 @@
public void run() {
if (config.getLearningAlgorithm() != null) {
config.setThreadIsRunning(true);
+ this.setPriority(Thread.MIN_PRIORITY);
config.getLearningAlgorithm().start();
config.setThreadIsRunning(false);
}
Modified: trunk/src/dl-learner/org/dllearner/gui/ThreadStatistics.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/ThreadStatistics.java 2008-03-12 19:25:45 UTC (rev 705)
+++ trunk/src/dl-learner/org/dllearner/gui/ThreadStatistics.java 2008-03-12 23:15:31 UTC (rev 706)
@@ -40,6 +40,7 @@
*/
@Override
public void run() {
+ this.setPriority(4);
if (config.getThreadIsRunning()) {
try {
sleep(1000); // sleep 1 second
Modified: trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java 2008-03-12 19:25:45 UTC (rev 705)
+++ trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java 2008-03-12 23:15:31 UTC (rev 706)
@@ -22,6 +22,7 @@
import javax.swing.*;
import javax.swing.tree.*;
+import org.dllearner.algorithms.refexamples.*;
/**
* TreeWindow
@@ -46,7 +47,7 @@
setIconImage(java.awt.Toolkit.getDefaultToolkit().getImage(
this.getClass().getResource("icon.gif")));
- // tree
+ // test example tree
DefaultMutableTreeNode exampleRoot = new DefaultMutableTreeNode("root");
for (int knot = 0; knot < 4; knot++) {
DefaultMutableTreeNode node = new DefaultMutableTreeNode("knot " + knot);
@@ -54,23 +55,35 @@
for (int leaf = 1; leaf < 4; leaf++)
node.add(new DefaultMutableTreeNode("leaf " + (knot * 3 + leaf)));
}
-
+
// tree model
EBNodeTreeModel root = null;
- if (config.getLearningAlgorithm() != null) {
- //ExampleBasedNode rootNode = config.getLearningAlgorithm().getStartNode();
- //root = new EBNodeTreeModel(rootNode);
- }
-
- // show tree
- if (root != null) {
- //JTree tree = new JTree(root);
- //this.add(new JScrollPane(tree));
- }
- else {
+ // if (config.getLearningAlgorithm() != null) {
+ if (config.getLearningAlgorithm() instanceof ExampleBasedROLComponent) {
+ ExampleBasedROLComponent ebrol = (ExampleBasedROLComponent) config
+ .getLearningAlgorithm();
+ ExampleBasedNode rootNode = ebrol.getStartNode();
+ root = new EBNodeTreeModel(rootNode);
+
+ // show tree
+ if (root != null) {
+ //System.out.println("TEST: " + root.getChildCount(rootNode));
+ for (int i = 0; i < root.getChildCount(rootNode); i++) {
+ // Object node = root.getChild(rootNode, i);
+
+ root.getChild(rootNode, i);
+ //System.out.println("TEST: " + root.getChild(rootNode, i));
+ }
+ JTree tree = new JTree(root);
+ this.add(new JScrollPane(tree));
+ }
+ } else {
JTree tree = new JTree(exampleRoot);
this.add(new JScrollPane(tree));
}
+
+ // }
+ this.repaint();
this.setVisible(true);
}
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|
|
From: <ku...@us...> - 2008-03-12 19:25:51
|
Revision: 705
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=705&view=rev
Author: kurzum
Date: 2008-03-12 12:25:45 -0700 (Wed, 12 Mar 2008)
Log Message:
-----------
KRK not completed
Added Paths:
-----------
trunk/examples/krk/
trunk/src/dl-learner/org/dllearner/examples/KRK.java
Added: trunk/src/dl-learner/org/dllearner/examples/KRK.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/examples/KRK.java (rev 0)
+++ trunk/src/dl-learner/org/dllearner/examples/KRK.java 2008-03-12 19:25:45 UTC (rev 705)
@@ -0,0 +1,213 @@
+package org.dllearner.examples;
+
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.FileNotFoundException;
+import java.io.FileReader;
+import java.net.URI;
+import java.util.HashMap;
+import java.util.Iterator;
+import java.util.SortedSet;
+import java.util.StringTokenizer;
+import java.util.TreeSet;
+
+import org.dllearner.core.owl.ClassAssertionAxiom;
+import org.dllearner.core.owl.DatatypeProperty;
+import org.dllearner.core.owl.Individual;
+import org.dllearner.core.owl.KB;
+import org.dllearner.core.owl.NamedClass;
+import org.dllearner.core.owl.ObjectProperty;
+import org.dllearner.core.owl.ObjectPropertyAssertion;
+import org.dllearner.core.owl.TransitiveObjectPropertyAxiom;
+import org.dllearner.reasoning.OWLAPIReasoner;
+
+public class KRK {
+
+ // REMEMBER
+ // FILES are letters
+ // RANKS are numbers
+
+ private static URI ontologyURI = URI.create("http://www.test.de/test");
+ static SortedSet<String> fileSet;
+ static SortedSet<String> rankSet;
+ static SortedSet<String> classSet;
+ static HashMap<String,SortedSet<String>> classToInd;
+ /**
+ * @param args
+ */
+ public static void main(String[] args) {
+
+ classToInd = new HashMap<String,SortedSet<String>>();
+ fileSet = new TreeSet<String>();
+ rankSet = new TreeSet<String>();
+ classSet = new TreeSet<String>();
+ KB kb=new KB();
+
+
+ fileSet.add("a"); fileSet.add("b"); fileSet.add("c"); fileSet.add("d"); fileSet.add("e"); fileSet.add("f"); fileSet.add("g"); fileSet.add("h");
+
+ for (int count = 1; count < 9; count++) {
+ rankSet.add("f"+count);
+ }
+
+ NamedClass[] nc=new NamedClass[]{
+ getAtomicConcept("Game"),
+ getAtomicConcept("WKing"),
+ getAtomicConcept("WRook"),
+ getAtomicConcept("BKing")};
+
+ ObjectProperty rank= getRole("hasRank");
+ ObjectProperty file= getRole("hasFile");
+ ObjectProperty piece= getRole("hasPiece");
+ ObjectProperty lessThan= getRole("strictLessThan");
+ //ObjectProperty rank= getRole("hasRank");
+
+ Individual game;
+ Individual wking;
+ Individual wrook;
+ Individual bking;
+
+ kb.addRBoxAxiom(new TransitiveObjectPropertyAxiom(lessThan));
+
+ Iterator<String> it = fileSet.iterator();
+ Individual current = getIndividual(it.next());
+ Individual next;
+ while (it.hasNext()){
+ next=getIndividual(it.next());
+ kb.addABoxAxiom(new ObjectPropertyAssertion(lessThan,current,next));
+ current=next;
+
+ }
+
+ it = rankSet.iterator();
+ current = getIndividual(it.next());
+ next=null;
+ while (it.hasNext()){
+ next=getIndividual(it.next());
+ kb.addABoxAxiom(new ObjectPropertyAssertion(lessThan,current,next));
+ current=next;
+
+ }
+
+
+ String fileIn = "examples/krk/krkopt.data";
+
+ // Datei öffnen
+ BufferedReader in = null;
+ try {
+ in = new BufferedReader(new FileReader(fileIn));
+ } catch (FileNotFoundException e) {
+ e.printStackTrace();
+ }
+
+ try{
+ String line = "";
+ String[] ar = new String[6];
+
+
+ int x=0;
+ while ( (line =in.readLine()) != null)
+ { x++;
+ //if(x % 3000 == 0 ) System.out.println("Currently at line "+x);
+ ar = tokenize(line);
+ game = getIndividual("game"+x);
+ wking = getIndividual("wking"+x);
+ wrook = getIndividual("wrook"+x);
+ bking = getIndividual("bking"+x);
+
+ classSet.add(ar[6]);
+
+ //ar[0]);
+
+ // CLASSES
+ kb.addABoxAxiom(new ClassAssertionAxiom(nc[0],game));
+ kb.addABoxAxiom(new ClassAssertionAxiom(getAtomicConcept(ar[6]),game));
+ kb.addABoxAxiom(new ClassAssertionAxiom(nc[1],wking));
+ kb.addABoxAxiom(new ClassAssertionAxiom(nc[2],wrook));
+ kb.addABoxAxiom(new ClassAssertionAxiom(nc[3],bking));
+
+ //PROPERTIES
+ kb.addABoxAxiom(new ObjectPropertyAssertion(piece,game,wking));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(piece,game,wrook));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(piece,game,bking));
+
+
+ kb.addABoxAxiom(new ObjectPropertyAssertion(rank,wking,getIndividual(ar[0])));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(file,wking,getIndividual("f"+ar[1])));
+
+ kb.addABoxAxiom(new ObjectPropertyAssertion(rank,wrook,getIndividual(ar[2])));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(file,wrook,getIndividual("f"+ar[3])));
+
+ kb.addABoxAxiom(new ObjectPropertyAssertion(rank,bking,getIndividual(ar[4])));
+ kb.addABoxAxiom(new ObjectPropertyAssertion(file,bking,getIndividual("f"+ar[5])));
+
+ //kb.addABoxAxiom(new ClassAssertionAxiom(new NamedClass("Game"),new Individual(names[0]+(x++))));
+ //kb.addABoxAxiom(new ClassAssertionAxiom(new NamedClass("Game"),new Individual(names[0]+(x++))));
+
+
+
+ //System.out.println(line);
+
+ }
+ System.out.println("Writing owl");
+ File owlfile = new File("examples/krk/test.owl");
+ //System.out.println(kb.toString("http://www.test.de/test", new HashMap<String, String>()));
+ OWLAPIReasoner.exportKBToOWL(owlfile, kb, ontologyURI);
+
+ }catch (Exception e) {e.printStackTrace();}
+ System.out.println("Done");
+ }
+
+ public static String[] tokenize (String s) {
+ StringTokenizer st=new StringTokenizer(s,",");
+
+ String tmp="";
+ String[] ret = new String[7];
+ int x = 0;
+ while (st.hasMoreTokens()){
+ tmp=st.nextToken();
+ if(x==6)tmp=tmp.toUpperCase();
+ ret[x] = tmp;
+ x++;
+ }
+ return ret;
+
+ }
+
+ private static Individual getIndividual(String name) {
+ return new Individual(ontologyURI + "#" + name);
+ }
+
+ private static ObjectProperty getRole(String name) {
+ return new ObjectProperty(ontologyURI + "#" + name);
+ }
+
+ @SuppressWarnings("unused")
+ private static DatatypeProperty getDatatypeProperty(String name) {
+ return new DatatypeProperty(ontologyURI + "#" + name);
+ }
+
+ private static NamedClass getAtomicConcept(String name) {
+ return new NamedClass(ontologyURI + "#" + name);
+ }
+
+ @SuppressWarnings("unused")
+ private static String getURI(String name) {
+ return ontologyURI + "#" + name;
+ }
+
+ @SuppressWarnings("unused")
+ private static ClassAssertionAxiom getConceptAssertion(String concept, String i) {
+ Individual ind = getIndividual(i);
+ NamedClass c = getAtomicConcept(concept);
+ return new ClassAssertionAxiom(c, ind);
+ }
+
+ @SuppressWarnings("unused")
+ private static ObjectPropertyAssertion getRoleAssertion(String role, String i1, String i2) {
+ Individual ind1 = getIndividual(i1);
+ Individual ind2 = getIndividual(i2);
+ ObjectProperty ar = getRole(role);
+ return new ObjectPropertyAssertion(ar, ind1, ind2);
+ }
+}
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|
|
From: <ton...@us...> - 2008-03-12 16:22:27
|
Revision: 704
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=704&view=rev
Author: tonytacker
Date: 2008-03-12 09:22:24 -0700 (Wed, 12 Mar 2008)
Log Message:
-----------
removed changes
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/algorithms/BruteForceLearner.java
trunk/src/dl-learner/org/dllearner/algorithms/RandomGuesser.java
trunk/src/dl-learner/org/dllearner/algorithms/gp/GP.java
trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLComponent.java
trunk/src/dl-learner/org/dllearner/algorithms/refinement/ROLearner.java
trunk/src/dl-learner/org/dllearner/core/LearningAlgorithm.java
trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java
Modified: trunk/src/dl-learner/org/dllearner/algorithms/BruteForceLearner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/BruteForceLearner.java 2008-03-12 02:45:28 UTC (rev 703)
+++ trunk/src/dl-learner/org/dllearner/algorithms/BruteForceLearner.java 2008-03-12 16:22:24 UTC (rev 704)
@@ -26,7 +26,6 @@
import java.util.List;
import java.util.Map;
-import org.dllearner.algorithms.refexamples.ExampleBasedNode;
import org.dllearner.core.LearningAlgorithm;
import org.dllearner.core.LearningProblem;
import org.dllearner.core.ReasoningService;
@@ -287,8 +286,4 @@
stop = true;
}
- @Override
- public ExampleBasedNode getStartNode() {
- return null;
- }
}
Modified: trunk/src/dl-learner/org/dllearner/algorithms/RandomGuesser.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/RandomGuesser.java 2008-03-12 02:45:28 UTC (rev 703)
+++ trunk/src/dl-learner/org/dllearner/algorithms/RandomGuesser.java 2008-03-12 16:22:24 UTC (rev 704)
@@ -25,7 +25,6 @@
import org.apache.log4j.Logger;
import org.dllearner.algorithms.gp.Program;
import org.dllearner.algorithms.gp.GPUtilities;
-import org.dllearner.algorithms.refexamples.ExampleBasedNode;
import org.dllearner.core.LearningAlgorithm;
import org.dllearner.core.LearningProblem;
import org.dllearner.core.ReasoningService;
@@ -128,9 +127,4 @@
}
- @Override
- public ExampleBasedNode getStartNode() {
- return null;
- }
-
}
Modified: trunk/src/dl-learner/org/dllearner/algorithms/gp/GP.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/gp/GP.java 2008-03-12 02:45:28 UTC (rev 703)
+++ trunk/src/dl-learner/org/dllearner/algorithms/gp/GP.java 2008-03-12 16:22:24 UTC (rev 704)
@@ -30,7 +30,6 @@
import java.util.Map.Entry;
import org.dllearner.algorithms.hybridgp.Psi;
-import org.dllearner.algorithms.refexamples.ExampleBasedNode;
import org.dllearner.core.LearningAlgorithm;
import org.dllearner.core.LearningProblem;
import org.dllearner.core.ReasoningService;
@@ -1005,8 +1004,4 @@
// this.algorithmType = algorithmType;
//}
- @Override
- public ExampleBasedNode getStartNode() {
- return null;
- }
}
Modified: trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLComponent.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLComponent.java 2008-03-12 02:45:28 UTC (rev 703)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLComponent.java 2008-03-12 16:22:24 UTC (rev 704)
@@ -349,7 +349,6 @@
algorithm.stop();
}
- @Override
public ExampleBasedNode getStartNode() {
return algorithm.getStartNode();
}
Modified: trunk/src/dl-learner/org/dllearner/algorithms/refinement/ROLearner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refinement/ROLearner.java 2008-03-12 02:45:28 UTC (rev 703)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refinement/ROLearner.java 2008-03-12 16:22:24 UTC (rev 704)
@@ -12,7 +12,6 @@
import java.util.TreeSet;
import org.apache.log4j.Logger;
-import org.dllearner.algorithms.refexamples.ExampleBasedNode;
import org.dllearner.core.LearningAlgorithm;
import org.dllearner.core.LearningProblem;
import org.dllearner.core.ReasoningService;
@@ -1004,12 +1003,8 @@
/**
* @return the startNode
*/
- public Node getStartNode_original() {
+ public Node getStartNode() {
return startNode;
}
- @Override
- public ExampleBasedNode getStartNode() {
- return null;
- }
}
Modified: trunk/src/dl-learner/org/dllearner/core/LearningAlgorithm.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/LearningAlgorithm.java 2008-03-12 02:45:28 UTC (rev 703)
+++ trunk/src/dl-learner/org/dllearner/core/LearningAlgorithm.java 2008-03-12 16:22:24 UTC (rev 704)
@@ -23,7 +23,6 @@
import java.util.LinkedList;
import java.util.List;
-import org.dllearner.algorithms.refexamples.ExampleBasedNode;
import org.dllearner.core.owl.Description;
/**
@@ -70,10 +69,5 @@
public static Collection<Class<? extends LearningProblem>> supportedLearningProblems() {
return new LinkedList<Class<? extends LearningProblem>>();
}
-
- /**
- * Root for search tree.
- * @return
- */
- public abstract ExampleBasedNode getStartNode();
+
}
Modified: trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java 2008-03-12 02:45:28 UTC (rev 703)
+++ trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java 2008-03-12 16:22:24 UTC (rev 704)
@@ -22,7 +22,6 @@
import javax.swing.*;
import javax.swing.tree.*;
-import org.dllearner.algorithms.refexamples.*;
/**
* TreeWindow
@@ -59,14 +58,14 @@
// tree model
EBNodeTreeModel root = null;
if (config.getLearningAlgorithm() != null) {
- ExampleBasedNode rootNode = config.getLearningAlgorithm().getStartNode();
- root = new EBNodeTreeModel(rootNode);
+ //ExampleBasedNode rootNode = config.getLearningAlgorithm().getStartNode();
+ //root = new EBNodeTreeModel(rootNode);
}
// show tree
if (root != null) {
- JTree tree = new JTree(root);
- this.add(new JScrollPane(tree));
+ //JTree tree = new JTree(root);
+ //this.add(new JScrollPane(tree));
}
else {
JTree tree = new JTree(exampleRoot);
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <ton...@us...> - 2008-03-12 02:45:39
|
Revision: 703
http://dl-learner.svn.sourceforge.net/dl-learner/?rev=703&view=rev
Author: tonytacker
Date: 2008-03-11 19:45:28 -0700 (Tue, 11 Mar 2008)
Log Message:
-----------
fix
Modified Paths:
--------------
trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java
Modified: trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java 2008-03-12 01:48:07 UTC (rev 702)
+++ trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java 2008-03-12 02:45:28 UTC (rev 703)
@@ -55,10 +55,14 @@
for (int leaf = 1; leaf < 4; leaf++)
node.add(new DefaultMutableTreeNode("leaf " + (knot * 3 + leaf)));
}
-
- ExampleBasedNode rootNode = config.getLearningAlgorithm().getStartNode();
- EBNodeTreeModel root = new EBNodeTreeModel(rootNode);
+ // tree model
+ EBNodeTreeModel root = null;
+ if (config.getLearningAlgorithm() != null) {
+ ExampleBasedNode rootNode = config.getLearningAlgorithm().getStartNode();
+ root = new EBNodeTreeModel(rootNode);
+ }
+
// show tree
if (root != null) {
JTree tree = new JTree(root);
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