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[DL-Learner SVN] SF.net SVN: dl-learner: [752] trunk/src/dl-learner/org/dllearner/algorithms /refexamples/ExampleBasedROLearner.java

From: <ku...@us...> - 2008-04-02 15:35:43

Revision: 752
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=752&view=rev
Author:   kurzum
Date:     2008-04-02 08:35:39 -0700 (Wed, 02 Apr 2008)

Log Message:
-----------
line for manchester syntax, minor importance

Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java

Modified: trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java	2008-04-02 10:44:32 UTC (rev 751)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java	2008-04-02 15:35:39 UTC (rev 752)
@@ -21,6 +21,7 @@
 
 import java.io.File;
 import java.text.DecimalFormat;
+import java.util.HashMap;
 import java.util.HashSet;
 import java.util.Iterator;
 import java.util.LinkedList;
@@ -385,6 +386,8 @@
 			logger.info("\nsolutions:");
 			for(Description c : solutions) {
 				logger.info("  " + c + " (length " + c.getLength() +", depth " + c.getDepth() + ")");
+				//TODO remove this line
+				logger.info( "Manchester: " + c.toManchesterSyntaxString(baseURI, new HashMap<String,String>()) );
 			}
 		}
 		logger.debug("size of candidate set: " + candidates.size());


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[DL-Learner SVN] SF.net SVN: dl-learner: [751] trunk/doc/configOptions.txt

From: <ku...@us...> - 2008-04-02 10:44:36

Revision: 751
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=751&view=rev
Author:   kurzum
Date:     2008-04-02 03:44:32 -0700 (Wed, 02 Apr 2008)

Log Message:
-----------
updated configOptions.txt

Modified Paths:
--------------
    trunk/doc/configOptions.txt

Modified: trunk/doc/configOptions.txt
===================================================================
--- trunk/doc/configOptions.txt	2008-04-02 10:31:31 UTC (rev 750)
+++ trunk/doc/configOptions.txt	2008-04-02 10:44:32 UTC (rev 751)
@@ -7,161 +7,189 @@
 component: KB file (org.dllearner.kb.KBFile)
 ============================================
 
-Usage:
-import("kbFileName.kb");
+CLI usage: import = ;
 
 option name: filename
 description: pointer to the KB file on local file system
 values: class org.dllearner.core.config.StringConfigOption
 default value: null
+CLI usage: .filename = null;
 
 option name: url
 description: URL pointer to the KB file
 values: class org.dllearner.core.config.StringConfigOption
 default value: null
+CLI usage: .url = null;
 
+
 component: OWL file (org.dllearner.kb.OWLFile)
 ==============================================
 
-Usage:
-import("owlFileName.owl");
+CLI usage: import = ;
 
 option name: url
 description: URL pointing to the OWL file
 values: class org.dllearner.core.config.StringConfigOption
 default value: null
+CLI usage: .url = null;
 
+
 component: SPARQL Endpoint (org.dllearner.kb.sparql.SparqlKnowledgeSource)
 ==========================================================================
 
-Usage:
-Example: import("http://dbpedia.openlinksw.com:8890/sparql","SPARQL");
+CLI usage: import = sparql;
 
 option name: url
 description: URL of SPARQL Endpoint
 values: class org.dllearner.core.config.StringConfigOption
 default value: null
+CLI usage: sparql.url = null;
 
 option name: instances
 description: relevant instances e.g. positive and negative examples in a learning problem
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: sparql.instances = null;
 
 option name: recursionDepth
 description: recursion depth of KB fragment selection
 values: class org.dllearner.core.config.IntegerConfigOption
 default value: 2
+CLI usage: sparql.recursionDepth = 2;
 
 option name: predefinedFilter
 description: the mode of the SPARQL Filter
 values: class org.dllearner.core.config.IntegerConfigOption
 default value: null
+CLI usage: sparql.predefinedFilter = null;
 
 option name: predefinedEndpoint
 description: the mode of the SPARQL Filter
 values: class org.dllearner.core.config.IntegerConfigOption
 default value: null
+CLI usage: sparql.predefinedEndpoint = null;
 
 option name: predList
 description: list of all ignored roles
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: sparql.predList = null;
 
 option name: objList
 description: list of all ignored objects
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: sparql.objList = null;
 
 option name: classList
 description: list of all ignored classes
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: sparql.classList = null;
 
 option name: format
 description: N-TRIPLES or KB format
 values: class org.dllearner.core.config.StringConfigOption
 default value: N-TRIPLES
+CLI usage: sparql.format = N-TRIPLES;
 
 option name: dumpToFile
 description: Specifies whether the extracted ontology is written to a file or not.
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: sparql.dumpToFile = true;
 
 option name: useLits
 description: use Literals in SPARQL query
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: sparql.useLits = null;
 
 option name: getAllSuperClasses
 description: If true then all superclasses are retrieved until the most general class (owl:Thing) is reached.
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: sparql.getAllSuperClasses = true;
 
 option name: learnDomain
 description: learns the Domain for a Role
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: sparql.learnDomain = null;
 
 option name: learnRange
 description: learns the Range for a Role
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: sparql.learnRange = null;
 
 option name: role
 description: role to learn Domain/Range from
 values: class org.dllearner.core.config.StringConfigOption
 default value: null
+CLI usage: sparql.role = null;
 
 option name: blankNodeIdentifier
 description: used to identify blanknodes in Tripels
 values: class org.dllearner.core.config.StringConfigOption
 default value: null
+CLI usage: sparql.blankNodeIdentifier = null;
 
 option name: example
 description: example
 values: class org.dllearner.core.config.StringTupleListConfigOption
 default value: null
+CLI usage: sparql.example = null;
 
 option name: replacePredicate
 description: rule for replacing predicates
 values: class org.dllearner.core.config.StringTupleListConfigOption
 default value: null
+CLI usage: sparql.replacePredicate = null;
 
 option name: replaceObject
 description: rule for replacing predicates
 values: class org.dllearner.core.config.StringTupleListConfigOption
 default value: null
+CLI usage: sparql.replaceObject = null;
 
 option name: breakSuperClassRetrievalAfter
 description: stops a cyclic hierarchy after specified number of classes
 values: class org.dllearner.core.config.IntegerConfigOption
 default value: null
+CLI usage: sparql.breakSuperClassRetrievalAfter = null;
 
 option name: numberOfInstancesUsedForRoleLearning
 description: 
 values: class org.dllearner.core.config.IntegerConfigOption
 default value: null
+CLI usage: sparql.numberOfInstancesUsedForRoleLearning = null;
 
 option name: closeAfterRecursion
 description: gets all classes for all instances
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: sparql.closeAfterRecursion = null;
 
 option name: verbosity
 description: control verbosity of output for this component
 values: class org.dllearner.core.config.StringConfigOption
 default value: warning
+CLI usage: sparql.verbosity = warning;
 
 option name: defaultGraphURIs
 description: a list of all default Graph URIs
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: sparql.defaultGraphURIs = null;
 
 option name: namedGraphURIs
 description: a list of all named Graph URIs
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: sparql.namedGraphURIs = null;
 
+
 *************
 * Reasoners *
 *************
@@ -169,47 +197,51 @@
 component: DIG reasoner (org.dllearner.reasoning.DIGReasoner)
 =============================================================
 
-Usage:
-reasoner = dig;
+CLI usage: reasoner = digReasoner;
 
 option name: reasonerUrl
 description: URL of the DIG reasoner
 values: class org.dllearner.core.config.StringConfigOption
 default value: null
+CLI usage: digReasoner.reasonerUrl = null;
 
 option name: writeDIGProtocol
 description: specifies whether or not to write a protocoll of send and received DIG requests
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: false
+CLI usage: digReasoner.writeDIGProtocol = false;
 
 option name: digProtocolFile
 description: the file to store the DIG protocol
 values: class org.dllearner.core.config.StringConfigOption
 default value: log/digProtocol.txt
+CLI usage: digReasoner.digProtocolFile = log/digProtocol.txt;
 
+
 component: fast instance checker (org.dllearner.reasoning.FastInstanceChecker)
 ==============================================================================
 
-Usage:
-reasoner = fastInstanceChecker;
+CLI usage: reasoner = fastInstanceChecker;
 
+
 component: fast retrieval reasoner (org.dllearner.reasoning.FastRetrievalReasoner)
 ==================================================================================
 
-Usage:
-reasoner = XXX;
+CLI usage: reasoner = ;
 
+
 component: OWL API reasoner (org.dllearner.reasoning.OWLAPIReasoner)
 ====================================================================
 
-Usage:
-reasoner = owlAPI;
+CLI usage: reasoner = owlAPIReasoner;
 
 option name: reasonerType
 description: FaCT++ or Pellet
 values: class org.dllearner.core.config.StringConfigOption
 default value: pellet
+CLI usage: owlAPIReasoner.reasonerType = pellet;
 
+
 *********************
 * Learning Problems *
 *********************
@@ -217,76 +249,87 @@
 component: two valued definition learning problem (org.dllearner.learningproblems.PosNegDefinitionLP)
 =====================================================================================================
 
-Usage:
-problem = XXX DEFAULT
+CLI usage: problem = posNegDefinitionLP;
 
 option name: positiveExamples
 description: positive examples
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: posNegDefinitionLP.positiveExamples = null;
 
 option name: negativeExamples
 description: negative examples
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: posNegDefinitionLP.negativeExamples = null;
 
 option name: useRetrievalForClassficiation
 description: Specifies whether to use retrieval or instance checks for testing a concept.
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: posNegDefinitionLP.useRetrievalForClassficiation = null;
 
 option name: percentPerLenghtUnit
 description: describes the reduction in classification accuracy in percent one is willing to accept for reducing the length of the concept by one
 values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
 default value: 0.05
+CLI usage: posNegDefinitionLP.percentPerLenghtUnit = 0.05;
 
 option name: useMultiInstanceChecks
 description: See UseMultiInstanceChecks enum.
 values: class org.dllearner.core.config.StringConfigOption
 default value: null
+CLI usage: posNegDefinitionLP.useMultiInstanceChecks = null;
 
+
 component: inclusion learning problem (org.dllearner.learningproblems.PosNegInclusionLP)
 ========================================================================================
 
-Usage:
-problem = posNegInclusion;
+CLI usage: problem = posNegInclusionLP;
 
 option name: positiveExamples
 description: positive examples
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: posNegInclusionLP.positiveExamples = null;
 
 option name: negativeExamples
 description: negative examples
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: posNegInclusionLP.negativeExamples = null;
 
 option name: useRetrievalForClassficiation
 description: Specifies whether to use retrieval or instance checks for testing a concept.
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: posNegInclusionLP.useRetrievalForClassficiation = null;
 
 option name: percentPerLenghtUnit
 description: describes the reduction in classification accuracy in percent one is willing to accept for reducing the length of the concept by one
 values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
 default value: 0.05
+CLI usage: posNegInclusionLP.percentPerLenghtUnit = 0.05;
 
 option name: useMultiInstanceChecks
 description: See UseMultiInstanceChecks enum.
 values: class org.dllearner.core.config.StringConfigOption
 default value: null
+CLI usage: posNegInclusionLP.useMultiInstanceChecks = null;
 
+
 component: positive only definition learning problem (org.dllearner.learningproblems.PosOnlyDefinitionLP)
 =========================================================================================================
 
-Usage:
-problem = posOnlyDefinition;
+CLI usage: problem = posOnlyDefinitionLP;
 
 option name: positiveExamples
 description: positive examples
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: posOnlyDefinitionLP.positiveExamples = null;
 
+
 ***********************
 * Learning Algorithms *
 ***********************
@@ -294,335 +337,396 @@
 component: brute force learning algorithm (org.dllearner.algorithms.BruteForceLearner)
 ======================================================================================
 
-Usage:
-null
+CLI usage: algorithm = ;
 
 option name: maxLength
 description: maximum length of generated concepts
 values: class org.dllearner.core.config.IntegerConfigOption
 default value: null
+CLI usage: .maxLength = null;
 
 option name: returnType
 description: Specifies the type which the solution has to belong to (if already) known. This means we inform the learning algorithm that the solution is a subclass of this type.
 values: class org.dllearner.core.config.StringConfigOption
 default value: null
+CLI usage: .returnType = null;
 
+
 component: random guesser learning algorithm (org.dllearner.algorithms.RandomGuesser)
 =====================================================================================
 
-Usage:
-null
+CLI usage: algorithm = ;
 
 option name: numberOfTrees
 description: number of randomly generated concepts/trees
 values: class org.dllearner.core.config.IntegerConfigOption
 default value: null
+CLI usage: .numberOfTrees = null;
 
 option name: maxDepth
 description: maximum depth of generated concepts/trees
 values: class org.dllearner.core.config.IntegerConfigOption
 default value: null
+CLI usage: .maxDepth = null;
 
+
 component: genetic programming learning algorithm (org.dllearner.algorithms.gp.GP)
 ==================================================================================
 
-Usage:
-null
+CLI usage: algorithm = gp;
 
 option name: selectionType
 description: selection type
 values: class org.dllearner.core.config.StringConfigOption
 default value: rankSelection
+CLI usage: gp.selectionType = rankSelection;
 
 option name: tournamentSize
 description: tournament size (applies only to tournament selection)
 values: class org.dllearner.core.config.IntegerConfigOption min 2 max 20
 default value: 3
+CLI usage: gp.tournamentSize = 3;
 
 option name: elitism
 description: specifies whether to use elitism in selection
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: gp.elitism = true;
 
 option name: mutationProbablitiy
 description: mutation probability
 values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
 default value: 0.03
+CLI usage: gp.mutationProbablitiy = 0.03;
 
 option name: crossoverProbablitiy
 description: crossover probability
 values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
 default value: 0.95
+CLI usage: gp.crossoverProbablitiy = 0.95;
 
 option name: hillClimbingProbablitiy
 description: hill climbing probability
 values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
 default value: 0.0
+CLI usage: gp.hillClimbingProbablitiy = 0.0;
 
 option name: refinementProbablitiy
 description: refinement operator probability (values higher than 0 turn this into a hybrid GP algorithm - see publication)
 values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
 default value: 0.0
+CLI usage: gp.refinementProbablitiy = 0.0;
 
 option name: numberOfIndividuals
 description: number of individuals
 values: class org.dllearner.core.config.IntegerConfigOption min 1
 default value: 100
+CLI usage: gp.numberOfIndividuals = 100;
 
 option name: numberOfSelectedIndividuals
 description: number of selected individuals
 values: class org.dllearner.core.config.IntegerConfigOption min 1
 default value: 92
+CLI usage: gp.numberOfSelectedIndividuals = 92;
 
 option name: useFixedNumberOfGenerations
 description: specifies whether to use a fixed number of generations
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: false
+CLI usage: gp.useFixedNumberOfGenerations = false;
 
 option name: generations
 description: number of generations (only valid if a fixed number of generations is used)
 values: class org.dllearner.core.config.IntegerConfigOption min 1
 default value: 20
+CLI usage: gp.generations = 20;
 
 option name: postConvergenceGenerations
 description: number of generations after which to stop if no improvement wrt. the best solution has been achieved
 values: class org.dllearner.core.config.IntegerConfigOption min 1
 default value: 50
+CLI usage: gp.postConvergenceGenerations = 50;
 
 option name: adc
 description: whether to use automatically defined concept (this invents new helper concepts, but enlarges the search space
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: false
+CLI usage: gp.adc = false;
 
 option name: initMinDepth
 description: minimum depth to use when creating the initial population
 values: class org.dllearner.core.config.IntegerConfigOption min 1
 default value: 4
+CLI usage: gp.initMinDepth = 4;
 
 option name: initMaxDepth
 description: maximum depth to use when creating the initial population
 values: class org.dllearner.core.config.IntegerConfigOption min 1
 default value: 6
+CLI usage: gp.initMaxDepth = 6;
 
 option name: maxConceptLength
 description: maximum concept length (higher length means lowest possible fitness)
 values: class org.dllearner.core.config.IntegerConfigOption min 1
 default value: 75
+CLI usage: gp.maxConceptLength = 75;
 
+
 component: example driven refinement operator based learning algorithm (org.dllearner.algorithms.refexamples.ExampleBasedROLComponent)
 ======================================================================================================================================
 
-Usage:
-algorithm = refexamples;
+CLI usage: algorithm = refexamples;
 
 option name: writeSearchTree
 description: specifies whether to write a search tree
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: false
+CLI usage: refexamples.writeSearchTree = false;
 
 option name: searchTreeFile
 description: file to use for the search tree
 values: class org.dllearner.core.config.StringConfigOption
 default value: log/searchTree.txt
+CLI usage: refexamples.searchTreeFile = log/searchTree.txt;
 
 option name: replaceSearchTree
 description: specifies whether to replace the search tree in the log file after each run or append the new search tree
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: false
+CLI usage: refexamples.replaceSearchTree = false;
 
 option name: heuristic
 description: specifiy the heuristic to use
 values: class org.dllearner.core.config.StringConfigOption
 default value: lexicographic
+CLI usage: refexamples.heuristic = lexicographic;
 
 option name: applyAllFilter
 description: usage of equivalence ALL R.C AND ALL R.D = ALL R.(C AND D)
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: refexamples.applyAllFilter = true;
 
 option name: applyExistsFilter
 description: usage of equivalence EXISTS R.C OR EXISTS R.D = EXISTS R.(C OR D)
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: refexamples.applyExistsFilter = true;
 
 option name: useTooWeakList
 description: try to filter out too weak concepts without sending them to the reasoner
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: refexamples.useTooWeakList = true;
 
 option name: useOverlyGeneralList
 description: try to find overly general concept without sending them to the reasoner
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: refexamples.useOverlyGeneralList = true;
 
 option name: useShortConceptConstruction
 description: shorten concept to see whether they already exist
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: refexamples.useShortConceptConstruction = true;
 
 option name: horizontalExpansionFactor
 description: horizontal expansion factor (see publication for description)
 values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
 default value: 0.6
+CLI usage: refexamples.horizontalExpansionFactor = 0.6;
 
 option name: improveSubsumptionHierarchy
 description: simplify subsumption hierarchy to reduce search space (see publication for description)
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: refexamples.improveSubsumptionHierarchy = true;
 
 option name: allowedConcepts
 description: concepts the algorithm is allowed to use
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: refexamples.allowedConcepts = null;
 
 option name: ignoredConcepts
 description: concepts the algorithm must ignore
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: refexamples.ignoredConcepts = null;
 
 option name: allowedRoles
 description: roles the algorithm is allowed to use
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: refexamples.allowedRoles = null;
 
 option name: ignoredRoles
 description: roles the algorithm must ignore
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: refexamples.ignoredRoles = null;
 
 option name: useAllConstructor
 description: specifies whether to universal concept constructor is used in the learning algorothm
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: refexamples.useAllConstructor = null;
 
 option name: useExistsConstructor
 description: specifies whether to existential concept constructor is used in the learning algorothm
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: refexamples.useExistsConstructor = null;
 
 option name: useNegation
 description: specifies whether negation is used in the learning algorothm
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: refexamples.useNegation = null;
 
 option name: useBooleanDatatypes
 description: specifies whether boolean datatypes are used in the learning algorothm
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: refexamples.useBooleanDatatypes = null;
 
 option name: noisePercentage
 description: the (approximated) percentage of noise within the examples
 values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 100.0
 default value: null
+CLI usage: refexamples.noisePercentage = null;
 
 option name: startClass
 description: the named class which should be used to start the algorithm (GUI: needs a widget for selecting a class)
 values: class org.dllearner.core.config.StringConfigOption
 default value: null
+CLI usage: refexamples.startClass = null;
 
+
 component: refinement operator based learning algorithm (org.dllearner.algorithms.refinement.ROLearner)
 =======================================================================================================
 
-Usage:
-algorithm = refinement;
+CLI usage: algorithm = refinement;
 
 option name: writeSearchTree
 description: specifies whether to write a search tree
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: false
+CLI usage: refinement.writeSearchTree = false;
 
 option name: searchTreeFile
 description: file to use for the search tree
 values: class org.dllearner.core.config.StringConfigOption
 default value: log/searchTree.txt
+CLI usage: refinement.searchTreeFile = log/searchTree.txt;
 
 option name: replaceSearchTree
 description: specifies whether to replace the search tree in the log file after each run or append the new search tree
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: false
+CLI usage: refinement.replaceSearchTree = false;
 
 option name: heuristic
 description: specifiy the heuristic to use
 values: class org.dllearner.core.config.StringConfigOption
 default value: lexicographic
+CLI usage: refinement.heuristic = lexicographic;
 
 option name: applyAllFilter
 description: usage of equivalence ALL R.C AND ALL R.D = ALL R.(C AND D)
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: refinement.applyAllFilter = true;
 
 option name: applyExistsFilter
 description: usage of equivalence EXISTS R.C OR EXISTS R.D = EXISTS R.(C OR D)
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: refinement.applyExistsFilter = true;
 
 option name: useTooWeakList
 description: try to filter out too weak concepts without sending them to the reasoner
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: refinement.useTooWeakList = true;
 
 option name: useOverlyGeneralList
 description: try to find overly general concept without sending them to the reasoner
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: refinement.useOverlyGeneralList = true;
 
 option name: useShortConceptConstruction
 description: shorten concept to see whether they already exist
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: refinement.useShortConceptConstruction = true;
 
 option name: horizontalExpansionFactor
 description: horizontal expansion factor (see publication for description)
 values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
 default value: 0.6
+CLI usage: refinement.horizontalExpansionFactor = 0.6;
 
 option name: improveSubsumptionHierarchy
 description: simplify subsumption hierarchy to reduce search space (see publication for description)
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: true
+CLI usage: refinement.improveSubsumptionHierarchy = true;
 
 option name: quiet
 description: may be deprecated soon
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: false
+CLI usage: refinement.quiet = false;
 
 option name: allowedConcepts
 description: concepts the algorithm is allowed to use
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: refinement.allowedConcepts = null;
 
 option name: ignoredConcepts
 description: concepts the algorithm must ignore
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: refinement.ignoredConcepts = null;
 
 option name: allowedRoles
 description: roles the algorithm is allowed to use
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: refinement.allowedRoles = null;
 
 option name: ignoredRoles
 description: roles the algorithm must ignore
 values: class org.dllearner.core.config.StringSetConfigOption
 default value: null
+CLI usage: refinement.ignoredRoles = null;
 
 option name: useAllConstructor
 description: specifies whether to universal concept constructor is used in the learning algorothm
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: refinement.useAllConstructor = null;
 
 option name: useExistsConstructor
 description: specifies whether to existential concept constructor is used in the learning algorothm
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: refinement.useExistsConstructor = null;
 
 option name: useNegation
 description: specifies whether negation is used in the learning algorothm
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: refinement.useNegation = null;
 
 option name: useBooleanDatatypes
 description: specifies whether boolean datatypes are used in the learning algorothm
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
+CLI usage: refinement.useBooleanDatatypes = null;
 
+


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[DL-Learner SVN] SF.net SVN: dl-learner: [750] trunk/src/dl-learner/org/dllearner

From: <ku...@us...> - 2008-04-02 10:31:33

Revision: 750
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=750&view=rev
Author:   kurzum
Date:     2008-04-02 03:31:31 -0700 (Wed, 02 Apr 2008)

Log Message:
-----------
some more changes to the option doc generator, still not perfect

Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/cli/Start.java
    trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
    trunk/src/dl-learner/org/dllearner/core/config/ConfigOption.java

Modified: trunk/src/dl-learner/org/dllearner/cli/Start.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/cli/Start.java	2008-04-01 11:48:39 UTC (rev 749)
+++ trunk/src/dl-learner/org/dllearner/cli/Start.java	2008-04-02 10:31:31 UTC (rev 750)
@@ -224,9 +224,12 @@
 		componentPrefixMapping.put(SparqlKnowledgeSource.class, "sparql");
 		// reasoners
 		componentPrefixMapping.put(DIGReasoner.class, "digReasoner");
+		componentPrefixMapping.put(FastInstanceChecker.class, "fastInstanceChecker");
 		componentPrefixMapping.put(OWLAPIReasoner.class, "owlAPIReasoner");
 		// learning problems - configured via + and - flags for examples
 		componentPrefixMapping.put(PosNegDefinitionLP.class, "posNegDefinitionLP");
+		componentPrefixMapping.put(PosNegInclusionLP.class, "posNegInclusionLP");
+		componentPrefixMapping.put(PosOnlyDefinitionLP.class, "posOnlyDefinitionLP");
 		// learning algorithms
 		componentPrefixMapping.put(ROLearner.class, "refinement");
 		componentPrefixMapping.put(ExampleBasedROLComponent.class, "refexamples");

Modified: trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/ComponentManager.java	2008-04-01 11:48:39 UTC (rev 749)
+++ trunk/src/dl-learner/org/dllearner/core/ComponentManager.java	2008-04-02 10:31:31 UTC (rev 750)
@@ -40,6 +40,7 @@
 import java.util.TreeMap;
 import java.util.TreeSet;
 
+import org.dllearner.cli.Start;
 import org.dllearner.core.config.ConfigEntry;
 import org.dllearner.core.config.ConfigOption;
 import org.dllearner.core.config.InvalidConfigOptionValueException;
@@ -421,31 +422,43 @@
 	private String getComponentConfigString(Class<? extends Component> component) {
 		String componentDescription =  "component: " + invokeStaticMethod(component,"getName") + " (" + component.getName() + ")";
 		String str = componentDescription + "\n";
+		String CLI = getCLIMapping(component.getSuperclass().getSimpleName()+"");
 		String usage ="";
 		
-		//usage =  invokeStaticMethod(component,"getUsage")+"";
-		
-		
-		/*if(usage.equals("null")) {
-			System.out.println("Component "+component.getName()+" needs Usage definition");
+		Map<Class<? extends Component>, String> m=Start.createComponentPrefixMapping();
+		for (Class<? extends Component> c : m.keySet()) {
+			if(c.getCanonicalName().equals(component.getCanonicalName()))
+			{	usage=m.get(c);
+			}
 		}
-		else	{
-			System.out.println(usage +" |in| "+ component.getName());
+	
+		for(int i=0; i<componentDescription.length(); i++) {
+			str += "=";
 		}
-		*/
-		
-		for(int i=0; i<componentDescription.length(); i++)
-			str += "=";
 		str += "\n\n";
+		str += "CLI usage: "+CLI+" = "+usage+";\n\n";
 		
-		//str += "Usage:\n"+usage+"\n\n";
 		
 		for(ConfigOption<?> option : componentOptions.get(component)) {
-			str += option.toString() + "\n";
+			str += option.toString() + 
+			"CLI usage: "+usage+"."+
+			option.getName()+" = "+option.getDefaultValue()+
+			";\n\n";
 		}		
-		return str;
+		return str+"\n";
 	}
 	
+	public static String getCLIMapping(String componentSuperClass){
+		HashMap<String, String> m = new HashMap<String, String>();
+		m.put("KnowledgeSource", "import");
+		m.put("ReasonerComponent", "reasoner");
+		m.put("PosNegLP", "problem");
+		m.put("PosOnlyLP", "problem");
+		m.put("LearningAlgorithm", "algorithm");
+		return m.get(componentSuperClass);
+	}
+	
+	
 	private Object invokeStaticMethod(Class<?> clazz, String methodName, Object... args) {
 		// unfortunately Java does not seem to offer a way to call
 		// a static method given a class object directly, so we have

Modified: trunk/src/dl-learner/org/dllearner/core/config/ConfigOption.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/config/ConfigOption.java	2008-04-01 11:48:39 UTC (rev 749)
+++ trunk/src/dl-learner/org/dllearner/core/config/ConfigOption.java	2008-04-02 10:31:31 UTC (rev 750)
@@ -77,10 +77,12 @@
 
 	public abstract boolean isValidValue(T value);
 
+	//TODO maybe change the function getClass in the options to get simpleName
 	public String getAllowedValuesDescription() {
 		return getClass().toString();
 	}
 
+	
 	@Override
 	public String toString() {
 		return "option name: " + name + "\ndescription: " + description + "\nvalues: "


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[DL-Learner SVN] SF.net SVN: dl-learner: [749] trunk/examples/krk/ test_ZERO_ONE_fastInstance_noALL_noNOT.conf

From: <ku...@us...> - 2008-04-01 11:48:42

Revision: 749
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=749&view=rev
Author:   kurzum
Date:     2008-04-01 04:48:39 -0700 (Tue, 01 Apr 2008)

Log Message:
-----------
fastinstance example no ALL no NOT

Added Paths:
-----------
    trunk/examples/krk/test_ZERO_ONE_fastInstance_noALL_noNOT.conf

Added: trunk/examples/krk/test_ZERO_ONE_fastInstance_noALL_noNOT.conf
===================================================================
--- trunk/examples/krk/test_ZERO_ONE_fastInstance_noALL_noNOT.conf	                        (rev 0)
+++ trunk/examples/krk/test_ZERO_ONE_fastInstance_noALL_noNOT.conf	2008-04-01 11:48:39 UTC (rev 749)
@@ -0,0 +1,148 @@
+/*
+solutions:
+INFO -   EXISTS "http://www.test.de/test#hasPiece".("http://www.test.de/test#BKing" AND EXISTS "http://www.test.de/test#fileDistanceLessThan1".TOP AND EXISTS "http://www.test.de/test#rankDistanceLessThan2".(EXISTS "http://www.test.de/test#hasLowerRankThan".TOP AND <= 1 "http://www.test.de/test#hasLowerFileThan" TOP)) (length 18, depth 6)
+DEBUG - size of candidate set: 17269
+DEBUG - properness tests (reasoner/short concept/too weak list): 0/8/28
+DEBUG - concept tests (reasoner/too weak list/overly general list/redundant concepts): 794/28/16933/1
+INFO - Algorithm terminated succesfully.
+number of retrievals: 12
+retrieval reasoning time: 0ms ( 0ms per retrieval)
+number of instance checks: 20512 (0 multiple)
+instance check reasoning time: 478ms ( 0ms per instance check)
+subsumption hierarchy queries: 4
+overall reasoning time: 478ms (0,512% of overall runtime)
+overall algorithm runtime: 93s 425ms
+
+
+INFO - best node 
+EXISTS "hasPiece".
+("BKing" AND EXISTS "fileDistanceLessThan1".TOP 
+AND EXISTS "rankDistanceLessThan2".
+	(EXISTS "hasLowerRankThan".TOP AND <= 1 "hasLowerFileThan" TOP)) 
+	[acc:100% h:0,654 q:0p-0n (REASONER), he:17 c:0]
+
+
+*/
+
+import("test_ZERO_ONE.owl");
+refexamples.ignoredConcepts={
+"http://www.test.de/test#ONE",
+"http://www.test.de/test#ZERO"};
+
+//problem = posOnlyDefinition;
+
+algorithm = refexamples;
+//algorithm = refinement;
+//refinement.heuristic=flexible;
+reasoner=fastInstanceChecker;
+
+refexamples.useAllConstructor = false;
+refexamples.useNegation = false;
+
++"http://www.test.de/test#game1"
++"http://www.test.de/test#game10"
++"http://www.test.de/test#game11"
++"http://www.test.de/test#game12"
++"http://www.test.de/test#game13"
++"http://www.test.de/test#game14"
++"http://www.test.de/test#game15"
++"http://www.test.de/test#game16"
++"http://www.test.de/test#game17"
++"http://www.test.de/test#game18"
++"http://www.test.de/test#game19"
++"http://www.test.de/test#game2"
++"http://www.test.de/test#game20"
++"http://www.test.de/test#game21"
++"http://www.test.de/test#game22"
++"http://www.test.de/test#game23"
++"http://www.test.de/test#game24"
++"http://www.test.de/test#game25"
++"http://www.test.de/test#game26"
++"http://www.test.de/test#game27"
++"http://www.test.de/test#game3"
++"http://www.test.de/test#game4"
++"http://www.test.de/test#game5"
++"http://www.test.de/test#game6"
++"http://www.test.de/test#game7"
++"http://www.test.de/test#game8"
++"http://www.test.de/test#game9"
+
+
+-"http://www.test.de/test#game100"
+-"http://www.test.de/test#game101"
+-"http://www.test.de/test#game102"
+-"http://www.test.de/test#game103"
+-"http://www.test.de/test#game104"
+-"http://www.test.de/test#game105"
+-"http://www.test.de/test#game28"
+-"http://www.test.de/test#game29"
+-"http://www.test.de/test#game30"
+-"http://www.test.de/test#game31"
+-"http://www.test.de/test#game32"
+-"http://www.test.de/test#game33"
+-"http://www.test.de/test#game34"
+-"http://www.test.de/test#game35"
+-"http://www.test.de/test#game36"
+-"http://www.test.de/test#game37"
+-"http://www.test.de/test#game38"
+-"http://www.test.de/test#game39"
+-"http://www.test.de/test#game40"
+-"http://www.test.de/test#game41"
+-"http://www.test.de/test#game42"
+-"http://www.test.de/test#game43"
+-"http://www.test.de/test#game44"
+-"http://www.test.de/test#game45"
+-"http://www.test.de/test#game46"
+-"http://www.test.de/test#game47"
+-"http://www.test.de/test#game48"
+-"http://www.test.de/test#game49"
+-"http://www.test.de/test#game50"
+-"http://www.test.de/test#game51"
+-"http://www.test.de/test#game52"
+-"http://www.test.de/test#game53"
+-"http://www.test.de/test#game54"
+-"http://www.test.de/test#game55"
+-"http://www.test.de/test#game56"
+-"http://www.test.de/test#game57"
+-"http://www.test.de/test#game58"
+-"http://www.test.de/test#game59"
+-"http://www.test.de/test#game60"
+-"http://www.test.de/test#game61"
+-"http://www.test.de/test#game62"
+-"http://www.test.de/test#game63"
+-"http://www.test.de/test#game64"
+-"http://www.test.de/test#game65"
+-"http://www.test.de/test#game66"
+-"http://www.test.de/test#game67"
+-"http://www.test.de/test#game68"
+-"http://www.test.de/test#game69"
+-"http://www.test.de/test#game70"
+-"http://www.test.de/test#game71"
+-"http://www.test.de/test#game72"
+-"http://www.test.de/test#game73"
+-"http://www.test.de/test#game74"
+-"http://www.test.de/test#game75"
+-"http://www.test.de/test#game76"
+-"http://www.test.de/test#game77"
+-"http://www.test.de/test#game78"
+-"http://www.test.de/test#game79"
+-"http://www.test.de/test#game80"
+-"http://www.test.de/test#game81"
+-"http://www.test.de/test#game82"
+-"http://www.test.de/test#game83"
+-"http://www.test.de/test#game84"
+-"http://www.test.de/test#game85"
+-"http://www.test.de/test#game86"
+-"http://www.test.de/test#game87"
+-"http://www.test.de/test#game88"
+-"http://www.test.de/test#game89"
+-"http://www.test.de/test#game90"
+-"http://www.test.de/test#game91"
+-"http://www.test.de/test#game92"
+-"http://www.test.de/test#game93"
+-"http://www.test.de/test#game94"
+-"http://www.test.de/test#game95"
+-"http://www.test.de/test#game96"
+-"http://www.test.de/test#game97"
+-"http://www.test.de/test#game98"
+-"http://www.test.de/test#game99"
\ No newline at end of file


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[DL-Learner SVN] SF.net SVN: dl-learner: [748] trunk/examples

From: <ku...@us...> - 2008-04-01 11:41:49

Revision: 748
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=748&view=rev
Author:   kurzum
Date:     2008-04-01 04:41:46 -0700 (Tue, 01 Apr 2008)

Log Message:
-----------
refexamples algorithm doesn't work with owlapi and dig see examples for testing

Added Paths:
-----------
    trunk/examples/conflict/
    trunk/examples/conflict/arch.owl
    trunk/examples/conflict/arch_refexamples_dig.conf
    trunk/examples/conflict/arch_refexamples_fastInstance.conf
    trunk/examples/conflict/arch_refexamples_owlAPI.conf
    trunk/examples/conflict/test_ZERO_ONE.owl
    trunk/examples/conflict/test_ZERO_ONE_refexamples_dig.conf
    trunk/examples/conflict/test_ZERO_ONE_refexamples_fastInstance.conf
    trunk/examples/conflict/test_ZERO_ONE_refexamples_owlAPI.conf

Added: trunk/examples/conflict/arch.owl
===================================================================
--- trunk/examples/conflict/arch.owl	                        (rev 0)
+++ trunk/examples/conflict/arch.owl	2008-04-01 11:41:46 UTC (rev 748)
@@ -0,0 +1,362 @@
+<?xml version="1.0"?>
+
+
+<!DOCTYPE rdf:RDF [
+    <!ENTITY foo "http://localhost/foo#" >
+    <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
+    <!ENTITY owl11 "http://www.w3.org/2006/12/owl11#" >
+    <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
+    <!ENTITY owl11xml "http://www.w3.org/2006/12/owl11-xml#" >
+    <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
+    <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
+]>
+
+
+<rdf:RDF xmlns="http://example.com#"
+     xml:base="http://example.com"
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+     xmlns:owl11="http://www.w3.org/2006/12/owl11#"
+     xmlns:owl11xml="http://www.w3.org/2006/12/owl11-xml#"
+     xmlns:owl="http://www.w3.org/2002/07/owl#"
+     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+     xmlns:foo="http://localhost/foo#">
+    <owl:Ontology rdf:about=""/>
+    
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Object Properties
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+    
+
+
+    <!-- http://localhost/foo#hasParallelpipe -->
+
+    <owl:ObjectProperty rdf:about="&foo;hasParallelpipe">
+        <rdfs:range rdf:resource="&foo;parallelpipe"/>
+        <rdfs:domain rdf:resource="&foo;construction"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://localhost/foo#hasPillar -->
+
+    <owl:ObjectProperty rdf:about="&foo;hasPillar">
+        <rdfs:domain rdf:resource="&foo;construction"/>
+        <rdfs:range rdf:resource="&foo;pillar"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://localhost/foo#leftof -->
+
+    <owl:ObjectProperty rdf:about="&foo;leftof">
+        <rdfs:domain rdf:resource="&foo;pillar"/>
+        <rdfs:range rdf:resource="&foo;pillar"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://localhost/foo#supports -->
+
+    <owl:ObjectProperty rdf:about="&foo;supports">
+        <rdfs:range rdf:resource="&foo;parallelpipe"/>
+        <rdfs:domain rdf:resource="&foo;pillar"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://localhost/foo#touches -->
+
+    <owl:ObjectProperty rdf:about="&foo;touches">
+        <rdfs:domain rdf:resource="&foo;pillar"/>
+        <rdfs:range rdf:resource="&foo;pillar"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Classes
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+    
+
+
+    <!-- http://localhost/foo#brick -->
+
+    <owl:Class rdf:about="&foo;brick"/>
+    
+
+
+    <!-- http://localhost/foo#construction -->
+
+    <owl:Class rdf:about="&foo;construction"/>
+    
+
+
+    <!-- http://localhost/foo#freeStandingPillar -->
+
+    <owl:Class rdf:about="&foo;freeStandingPillar">
+        <owl:equivalentClass>
+            <owl:Class>
+                <owl:intersectionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="&foo;pillar"/>
+                    <owl:Class>
+                        <owl:complementOf>
+                            <owl:Restriction>
+                                <owl:onProperty rdf:resource="&foo;touches"/>
+                                <owl:someValuesFrom rdf:resource="&owl;Thing"/>
+                            </owl:Restriction>
+                        </owl:complementOf>
+                    </owl:Class>
+                </owl:intersectionOf>
+            </owl:Class>
+        </owl:equivalentClass>
+    </owl:Class>
+    
+
+
+    <!-- http://localhost/foo#parallelpipe -->
+
+    <owl:Class rdf:about="&foo;parallelpipe">
+        <owl:equivalentClass>
+            <owl:Class>
+                <owl:unionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="&foo;wedge"/>
+                    <rdf:Description rdf:about="&foo;brick"/>
+                </owl:unionOf>
+            </owl:Class>
+        </owl:equivalentClass>
+    </owl:Class>
+    
+
+
+    <!-- http://localhost/foo#pillar -->
+
+    <owl:Class rdf:about="&foo;pillar"/>
+    
+
+
+    <!-- http://localhost/foo#wedge -->
+
+    <owl:Class rdf:about="&foo;wedge"/>
+    
+
+
+    <!-- http://www.w3.org/2002/07/owl#Nothing -->
+
+    <owl:Class rdf:about="&owl;Nothing">
+        <owl:equivalentClass>
+            <owl:Class>
+                <owl:intersectionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="&foo;pillar"/>
+                    <rdf:Description rdf:about="&foo;parallelpipe"/>
+                </owl:intersectionOf>
+            </owl:Class>
+        </owl:equivalentClass>
+        <owl:equivalentClass>
+            <owl:Class>
+                <owl:intersectionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="&foo;construction"/>
+                    <rdf:Description rdf:about="&foo;parallelpipe"/>
+                </owl:intersectionOf>
+            </owl:Class>
+        </owl:equivalentClass>
+        <owl:equivalentClass>
+            <owl:Class>
+                <owl:intersectionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="&foo;construction"/>
+                    <rdf:Description rdf:about="&foo;pillar"/>
+                </owl:intersectionOf>
+            </owl:Class>
+        </owl:equivalentClass>
+    </owl:Class>
+    
+
+
+    <!-- http://www.w3.org/2002/07/owl#Thing -->
+
+    <owl:Class rdf:about="&owl;Thing"/>
+    
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Individuals
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+    
+
+
+    <!-- http://localhost/foo#a -->
+
+    <foo:brick rdf:about="&foo;a"/>
+    
+
+
+    <!-- http://localhost/foo#b -->
+
+    <foo:brick rdf:about="&foo;b"/>
+    
+
+
+    <!-- http://localhost/foo#c -->
+
+    <foo:brick rdf:about="&foo;c"/>
+    
+
+
+    <!-- http://localhost/foo#c1 -->
+
+    <foo:construction rdf:about="&foo;c1">
+        <foo:hasParallelpipe rdf:resource="&foo;a"/>
+        <foo:hasPillar rdf:resource="&foo;p2"/>
+        <foo:hasPillar rdf:resource="&foo;p1"/>
+    </foo:construction>
+    
+
+
+    <!-- http://localhost/foo#c2 -->
+
+    <foo:construction rdf:about="&foo;c2">
+        <foo:hasPillar rdf:resource="&foo;p3"/>
+        <foo:hasParallelpipe rdf:resource="&foo;b"/>
+        <foo:hasPillar rdf:resource="&foo;p4"/>
+    </foo:construction>
+    
+
+
+    <!-- http://localhost/foo#c3 -->
+
+    <foo:construction rdf:about="&foo;c3">
+        <foo:hasPillar rdf:resource="&foo;p5"/>
+        <foo:hasParallelpipe rdf:resource="&foo;c"/>
+        <foo:hasPillar rdf:resource="&foo;p6"/>
+    </foo:construction>
+    
+
+
+    <!-- http://localhost/foo#c4 -->
+
+    <foo:construction rdf:about="&foo;c4">
+        <foo:hasParallelpipe rdf:resource="&foo;d"/>
+        <foo:hasPillar rdf:resource="&foo;p8"/>
+        <foo:hasPillar rdf:resource="&foo;p7"/>
+    </foo:construction>
+    
+
+
+    <!-- http://localhost/foo#c5 -->
+
+    <foo:construction rdf:about="&foo;c5">
+        <foo:hasPillar rdf:resource="&foo;p9"/>
+        <foo:hasParallelpipe rdf:resource="&foo;e"/>
+    </foo:construction>
+    
+
+
+    <!-- http://localhost/foo#d -->
+
+    <foo:wedge rdf:about="&foo;d"/>
+    
+
+
+    <!-- http://localhost/foo#e -->
+
+    <foo:wedge rdf:about="&foo;e"/>
+    
+
+
+    <!-- http://localhost/foo#p1 -->
+
+    <foo:pillar rdf:about="&foo;p1">
+        <rdf:type rdf:resource="&foo;freeStandingPillar"/>
+        <foo:supports rdf:resource="&foo;a"/>
+        <foo:leftof rdf:resource="&foo;p2"/>
+    </foo:pillar>
+    
+
+
+    <!-- http://localhost/foo#p2 -->
+
+    <foo:pillar rdf:about="&foo;p2">
+        <rdf:type rdf:resource="&foo;freeStandingPillar"/>
+        <foo:supports rdf:resource="&foo;a"/>
+    </foo:pillar>
+    
+
+
+    <!-- http://localhost/foo#p3 -->
+
+    <foo:freeStandingPillar rdf:about="&foo;p3">
+        <rdf:type rdf:resource="&foo;pillar"/>
+        <foo:leftof rdf:resource="&foo;p4"/>
+    </foo:freeStandingPillar>
+    
+
+
+    <!-- http://localhost/foo#p4 -->
+
+    <foo:freeStandingPillar rdf:about="&foo;p4">
+        <rdf:type rdf:resource="&foo;pillar"/>
+    </foo:freeStandingPillar>
+    
+
+
+    <!-- http://localhost/foo#p5 -->
+
+    <foo:pillar rdf:about="&foo;p5">
+        <foo:supports rdf:resource="&foo;c"/>
+        <foo:touches rdf:resource="&foo;p6"/>
+        <foo:leftof rdf:resource="&foo;p6"/>
+    </foo:pillar>
+    
+
+
+    <!-- http://localhost/foo#p6 -->
+
+    <foo:pillar rdf:about="&foo;p6">
+        <foo:supports rdf:resource="&foo;c"/>
+    </foo:pillar>
+    
+
+
+    <!-- http://localhost/foo#p7 -->
+
+    <foo:freeStandingPillar rdf:about="&foo;p7">
+        <rdf:type rdf:resource="&foo;pillar"/>
+        <foo:leftof rdf:resource="&foo;p8"/>
+        <foo:supports rdf:resource="&foo;d"/>
+    </foo:freeStandingPillar>
+    
+
+
+    <!-- http://localhost/foo#p8 -->
+
+    <foo:freeStandingPillar rdf:about="&foo;p8">
+        <rdf:type rdf:resource="&foo;pillar"/>
+        <foo:supports rdf:resource="&foo;d"/>
+    </foo:freeStandingPillar>
+    
+
+
+    <!-- http://localhost/foo#p9 -->
+
+    <foo:freeStandingPillar rdf:about="&foo;p9">
+        <rdf:type rdf:resource="&foo;pillar"/>
+        <foo:supports rdf:resource="&foo;e"/>
+    </foo:freeStandingPillar>
+</rdf:RDF>

Added: trunk/examples/conflict/arch_refexamples_dig.conf
===================================================================
--- trunk/examples/conflict/arch_refexamples_dig.conf	                        (rev 0)
+++ trunk/examples/conflict/arch_refexamples_dig.conf	2008-04-01 11:41:46 UTC (rev 748)
@@ -0,0 +1,36 @@
+/**
+ * Arches Example
+ *
+ * Originally published in Winston, P.H. (1975). Learning structural descriptions 
+ * from examples. In P.H. Winstons (Ed.), The psychology of computer vision. New 
+ * York: Mc Graw- Hill.
+ *
+ * See the pictures for an illustration of the input data.
+ *
+ * The example is a converted, modified and extended version of the original 
+ * learning problem.
+ *
+ * possible solution:
+ *   EXISTS hasPillar.(freeStandingPillar AND EXISTS leftof.EXISTS supports.TOP)
+ *
+ * Copyright (C) 2007, Sebastian Hellmann
+ */
+
+
+algorithm = refexamples;
+reasoner=dig;
+
+
+
+/** background knowledge **/
+import("arch.owl");
+
+
+
+
+/** examples **/
++c1
++c4
+-c2
+-c3
+-c5

Added: trunk/examples/conflict/arch_refexamples_fastInstance.conf
===================================================================
--- trunk/examples/conflict/arch_refexamples_fastInstance.conf	                        (rev 0)
+++ trunk/examples/conflict/arch_refexamples_fastInstance.conf	2008-04-01 11:41:46 UTC (rev 748)
@@ -0,0 +1,31 @@
+/**
+ * Arches Example
+ *
+ * Originally published in Winston, P.H. (1975). Learning structural descriptions 
+ * from examples. In P.H. Winstons (Ed.), The psychology of computer vision. New 
+ * York: Mc Graw- Hill.
+ *
+ * See the pictures for an illustration of the input data.
+ *
+ * The example is a converted, modified and extended version of the original 
+ * learning problem.
+ *
+ * possible solution:
+ *   EXISTS hasPillar.(freeStandingPillar AND EXISTS leftof.EXISTS supports.TOP)
+ *
+ * Copyright (C) 2007, Sebastian Hellmann
+ */
+
+algorithm = refexamples;
+reasoner=fastInstanceChecker;
+
+
+/** background knowledge **/
+import("arch.owl");
+
+/** examples **/
++c1
++c4
+-c2
+-c3
+-c5

Added: trunk/examples/conflict/arch_refexamples_owlAPI.conf
===================================================================
--- trunk/examples/conflict/arch_refexamples_owlAPI.conf	                        (rev 0)
+++ trunk/examples/conflict/arch_refexamples_owlAPI.conf	2008-04-01 11:41:46 UTC (rev 748)
@@ -0,0 +1,32 @@
+/**
+ * Arches Example
+ *
+ * Originally published in Winston, P.H. (1975). Learning structural descriptions 
+ * from examples. In P.H. Winstons (Ed.), The psychology of computer vision. New 
+ * York: Mc Graw- Hill.
+ *
+ * See the pictures for an illustration of the input data.
+ *
+ * The example is a converted, modified and extended version of the original 
+ * learning problem.
+ *
+ * possible solution:
+ *   EXISTS hasPillar.(freeStandingPillar AND EXISTS leftof.EXISTS supports.TOP)
+ *
+ * Copyright (C) 2007, Sebastian Hellmann
+ */
+
+algorithm = refexamples;
+reasoner=owlAPI;
+
+
+
+/** background knowledge **/
+import("arch.owl");
+
+/** examples **/
++c1
++c4
+-c2
+-c3
+-c5

Added: trunk/examples/conflict/test_ZERO_ONE.owl
===================================================================
--- trunk/examples/conflict/test_ZERO_ONE.owl	                        (rev 0)
+++ trunk/examples/conflict/test_ZERO_ONE.owl	2008-04-01 11:41:46 UTC (rev 748)
@@ -0,0 +1,5043 @@
+<?xml version="1.0"?>
+
+
+<!DOCTYPE rdf:RDF [
+    <!ENTITY test "http://www.test.de/test#" >
+    <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
+    <!ENTITY owl11 "http://www.w3.org/2006/12/owl11#" >
+    <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
+    <!ENTITY owl11xml "http://www.w3.org/2006/12/owl11-xml#" >
+    <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
+    <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
+]>
+
+
+<rdf:RDF xmlns="http://www.test.de/test#"
+     xml:base="http://www.test.de/test"
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+     xmlns:owl11="http://www.w3.org/2006/12/owl11#"
+     xmlns:owl11xml="http://www.w3.org/2006/12/owl11-xml#"
+     xmlns:test="http://www.test.de/test#"
+     xmlns:owl="http://www.w3.org/2002/07/owl#"
+     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+    <owl:Ontology rdf:about=""/>
+    
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Object Properties
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+    
+
+
+    <!-- http://www.test.de/test#fileDistance0 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistance0">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan1"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistance1 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistance1">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan2"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistance2 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistance2">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan3"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistance3 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistance3">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan4"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistance4 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistance4">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan5"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistance5 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistance5">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan6"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistance6 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistance6">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan7"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistance7 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistance7">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan8"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistanceLessThan0 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistanceLessThan0">
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan1"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistanceLessThan1 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistanceLessThan1">
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan2"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistanceLessThan2 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistanceLessThan2">
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan3"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistanceLessThan3 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistanceLessThan3">
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan4"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistanceLessThan4 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistanceLessThan4">
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan5"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistanceLessThan5 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistanceLessThan5">
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan6"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistanceLessThan6 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistanceLessThan6">
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan7"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistanceLessThan7 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistanceLessThan7">
+        <rdfs:subPropertyOf rdf:resource="#fileDistanceLessThan8"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#fileDistanceLessThan8 -->
+
+    <owl:ObjectProperty rdf:about="#fileDistanceLessThan8">
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#hasLowerFileThan -->
+
+    <owl:ObjectProperty rdf:about="#hasLowerFileThan">
+        <rdf:type rdf:resource="&owl;TransitiveProperty"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#hasLowerRankThan -->
+
+    <owl:ObjectProperty rdf:about="#hasLowerRankThan">
+        <rdf:type rdf:resource="&owl;TransitiveProperty"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#hasPiece -->
+
+    <owl:ObjectProperty rdf:about="#hasPiece">
+        <rdfs:domain rdf:resource="#Game"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistance0 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistance0">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan1"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistance1 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistance1">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan2"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistance2 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistance2">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan3"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistance3 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistance3">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan4"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistance4 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistance4">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan5"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistance5 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistance5">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan6"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistance6 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistance6">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan7"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistance7 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistance7">
+        <rdf:type rdf:resource="&owl;SymmetricProperty"/>
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan8"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistanceLessThan0 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistanceLessThan0">
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan1"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistanceLessThan1 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistanceLessThan1">
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan2"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistanceLessThan2 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistanceLessThan2">
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan3"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistanceLessThan3 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistanceLessThan3">
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan4"/>
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistanceLessThan4 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistanceLessThan4">
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan5"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistanceLessThan5 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistanceLessThan5">
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan6"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistanceLessThan6 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistanceLessThan6">
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan7"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistanceLessThan7 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistanceLessThan7">
+        <rdfs:domain rdf:resource="#Piece"/>
+        <rdfs:subPropertyOf rdf:resource="#rankDistanceLessThan8"/>
+        <rdfs:range rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.test.de/test#rankDistanceLessThan8 -->
+
+    <owl:ObjectProperty rdf:about="#rankDistanceLessThan8">
+        <rdfs:range rdf:resource="#Piece"/>
+        <rdfs:domain rdf:resource="#Piece"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Classes
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+    
+
+
+    <!-- http://www.test.de/test#BKing -->
+
+    <owl:Class rdf:about="#BKing">
+        <rdfs:subClassOf rdf:resource="#Piece"/>
+        <owl:disjointWith rdf:resource="#WKing"/>
+    </owl:Class>
+    
+
+
+    <!-- http://www.test.de/test#Game -->
+
+    <owl:Class rdf:about="#Game"/>
+    
+
+
+    <!-- http://www.test.de/test#ONE -->
+
+    <owl:Class rdf:about="#ONE"/>
+    
+
+
+    <!-- http://www.test.de/test#Piece -->
+
+    <owl:Class rdf:about="#Piece">
+        <owl:disjointWith rdf:resource="#Game"/>
+    </owl:Class>
+    
+
+
+    <!-- http://www.test.de/test#WKing -->
+
+    <owl:Class rdf:about="#WKing">
+        <rdfs:subClassOf rdf:resource="#Piece"/>
+    </owl:Class>
+    
+
+
+    <!-- http://www.test.de/test#WRook -->
+
+    <owl:Class rdf:about="#WRook">
+        <rdfs:subClassOf rdf:resource="#Piece"/>
+        <owl:disjointWith rdf:resource="#BKing"/>
+        <owl:disjointWith rdf:resource="#WKing"/>
+    </owl:Class>
+    
+
+
+    <!-- http://www.test.de/test#ZERO -->
+
+    <owl:Class rdf:about="#ZERO"/>
+    
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Individuals
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_1 -->
+
+    <BKing rdf:about="#bking_a1_1">
+        <hasLowerFileThan rdf:resource="#wking_c1_1"/>
+        <hasLowerRankThan rdf:resource="#wrook_a3_1"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_10 -->
+
+    <BKing rdf:about="#bking_a1_10">
+        <hasLowerRankThan rdf:resource="#wrook_a5_10"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_10"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_10"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_12 -->
+
+    <BKing rdf:about="#bking_a1_12">
+        <hasLowerRankThan rdf:resource="#wrook_a6_12"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_12"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_12"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_14 -->
+
+    <BKing rdf:about="#bking_a1_14">
+        <hasLowerRankThan rdf:resource="#wrook_a7_14"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_14"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_14"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_16 -->
+
+    <BKing rdf:about="#bking_a1_16">
+        <hasLowerRankThan rdf:resource="#wking_c2_16"/>
+        <hasLowerRankThan rdf:resource="#wrook_a8_16"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_16"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_2 -->
+
+    <BKing rdf:about="#bking_a1_2">
+        <hasLowerRankThan rdf:resource="#wrook_a4_2"/>
+        <hasLowerFileThan rdf:resource="#wking_c1_2"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_3 -->
+
+    <BKing rdf:about="#bking_a1_3">
+        <hasLowerRankThan rdf:resource="#wrook_a5_3"/>
+        <hasLowerFileThan rdf:resource="#wking_c1_3"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_35 -->
+
+    <BKing rdf:about="#bking_a1_35">
+        <hasLowerFileThan rdf:resource="#wking_c2_35"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_35"/>
+        <hasLowerFileThan rdf:resource="#wrook_b4_35"/>
+        <hasLowerRankThan rdf:resource="#wrook_b4_35"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_36 -->
+
+    <BKing rdf:about="#bking_a1_36">
+        <hasLowerFileThan rdf:resource="#wrook_b5_36"/>
+        <hasLowerRankThan rdf:resource="#wrook_b5_36"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_36"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_36"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_37 -->
+
+    <BKing rdf:about="#bking_a1_37">
+        <hasLowerFileThan rdf:resource="#wking_c2_37"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_37"/>
+        <hasLowerFileThan rdf:resource="#wrook_b6_37"/>
+        <hasLowerRankThan rdf:resource="#wrook_b6_37"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_38 -->
+
+    <BKing rdf:about="#bking_a1_38">
+        <hasLowerFileThan rdf:resource="#wrook_b7_38"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_38"/>
+        <hasLowerRankThan rdf:resource="#wrook_b7_38"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_38"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_39 -->
+
+    <BKing rdf:about="#bking_a1_39">
+        <hasLowerRankThan rdf:resource="#wrook_b8_39"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_39"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_39"/>
+        <hasLowerFileThan rdf:resource="#wrook_b8_39"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_4 -->
+
+    <BKing rdf:about="#bking_a1_4">
+        <hasLowerFileThan rdf:resource="#wking_c1_4"/>
+        <hasLowerRankThan rdf:resource="#wrook_a6_4"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_41 -->
+
+    <BKing rdf:about="#bking_a1_41">
+        <hasLowerRankThan rdf:resource="#wking_c2_41"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_41"/>
+        <hasLowerFileThan rdf:resource="#wrook_c4_41"/>
+        <hasLowerRankThan rdf:resource="#wrook_c4_41"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_43 -->
+
+    <BKing rdf:about="#bking_a1_43">
+        <hasLowerRankThan rdf:resource="#wking_c2_43"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_43"/>
+        <hasLowerFileThan rdf:resource="#wrook_c5_43"/>
+        <hasLowerRankThan rdf:resource="#wrook_c5_43"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_44 -->
+
+    <BKing rdf:about="#bking_a1_44">
+        <hasLowerFileThan rdf:resource="#wking_c2_44"/>
+        <hasLowerFileThan rdf:resource="#wrook_c6_44"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_44"/>
+        <hasLowerRankThan rdf:resource="#wrook_c6_44"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_45 -->
+
+    <BKing rdf:about="#bking_a1_45">
+        <hasLowerFileThan rdf:resource="#wking_c2_45"/>
+        <hasLowerRankThan rdf:resource="#wrook_c7_45"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_45"/>
+        <hasLowerFileThan rdf:resource="#wrook_c7_45"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_46 -->
+
+    <BKing rdf:about="#bking_a1_46">
+        <hasLowerRankThan rdf:resource="#wrook_c8_46"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_46"/>
+        <hasLowerFileThan rdf:resource="#wrook_c8_46"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_46"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_48 -->
+
+    <BKing rdf:about="#bking_a1_48">
+        <hasLowerFileThan rdf:resource="#wrook_d4_48"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_48"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_48"/>
+        <hasLowerRankThan rdf:resource="#wrook_d4_48"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_5 -->
+
+    <BKing rdf:about="#bking_a1_5">
+        <hasLowerRankThan rdf:resource="#wrook_a7_5"/>
+        <hasLowerFileThan rdf:resource="#wking_c1_5"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_50 -->
+
+    <BKing rdf:about="#bking_a1_50">
+        <hasLowerRankThan rdf:resource="#wking_c2_50"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_50"/>
+        <hasLowerRankThan rdf:resource="#wrook_d5_50"/>
+        <hasLowerFileThan rdf:resource="#wrook_d5_50"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_51 -->
+
+    <BKing rdf:about="#bking_a1_51">
+        <hasLowerRankThan rdf:resource="#wrook_d6_51"/>
+        <hasLowerFileThan rdf:resource="#wrook_d6_51"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_51"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_51"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_52 -->
+
+    <BKing rdf:about="#bking_a1_52">
+        <hasLowerFileThan rdf:resource="#wking_c2_52"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_52"/>
+        <hasLowerFileThan rdf:resource="#wrook_d7_52"/>
+        <hasLowerRankThan rdf:resource="#wrook_d7_52"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_53 -->
+
+    <BKing rdf:about="#bking_a1_53">
+        <hasLowerFileThan rdf:resource="#wrook_d8_53"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_53"/>
+        <hasLowerRankThan rdf:resource="#wrook_d8_53"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_53"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_55 -->
+
+    <BKing rdf:about="#bking_a1_55">
+        <hasLowerRankThan rdf:resource="#wking_c2_55"/>
+        <hasLowerFileThan rdf:resource="#wrook_e4_55"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_55"/>
+        <hasLowerRankThan rdf:resource="#wrook_e4_55"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_57 -->
+
+    <BKing rdf:about="#bking_a1_57">
+        <hasLowerRankThan rdf:resource="#wking_c2_57"/>
+        <hasLowerRankThan rdf:resource="#wrook_e5_57"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_57"/>
+        <hasLowerFileThan rdf:resource="#wrook_e5_57"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_58 -->
+
+    <BKing rdf:about="#bking_a1_58">
+        <hasLowerFileThan rdf:resource="#wking_c2_58"/>
+        <hasLowerRankThan rdf:resource="#wrook_e6_58"/>
+        <hasLowerFileThan rdf:resource="#wrook_e6_58"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_58"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_59 -->
+
+    <BKing rdf:about="#bking_a1_59">
+        <hasLowerRankThan rdf:resource="#wking_c2_59"/>
+        <hasLowerFileThan rdf:resource="#wrook_e7_59"/>
+        <hasLowerRankThan rdf:resource="#wrook_e7_59"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_59"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_6 -->
+
+    <BKing rdf:about="#bking_a1_6">
+        <hasLowerFileThan rdf:resource="#wking_c1_6"/>
+        <hasLowerRankThan rdf:resource="#wrook_a8_6"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_60 -->
+
+    <BKing rdf:about="#bking_a1_60">
+        <hasLowerRankThan rdf:resource="#wking_c2_60"/>
+        <hasLowerRankThan rdf:resource="#wrook_e8_60"/>
+        <hasLowerFileThan rdf:resource="#wrook_e8_60"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_60"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_62 -->
+
+    <BKing rdf:about="#bking_a1_62">
+        <hasLowerRankThan rdf:resource="#wking_c2_62"/>
+        <hasLowerRankThan rdf:resource="#wrook_f4_62"/>
+        <hasLowerFileThan rdf:resource="#wrook_f4_62"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_62"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_64 -->
+
+    <BKing rdf:about="#bking_a1_64">
+        <hasLowerRankThan rdf:resource="#wrook_f5_64"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_64"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_64"/>
+        <hasLowerFileThan rdf:resource="#wrook_f5_64"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_65 -->
+
+    <BKing rdf:about="#bking_a1_65">
+        <hasLowerFileThan rdf:resource="#wrook_f6_65"/>
+        <hasLowerRankThan rdf:resource="#wrook_f6_65"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_65"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_65"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_66 -->
+
+    <BKing rdf:about="#bking_a1_66">
+        <hasLowerRankThan rdf:resource="#wrook_f7_66"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_66"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_66"/>
+        <hasLowerFileThan rdf:resource="#wrook_f7_66"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_67 -->
+
+    <BKing rdf:about="#bking_a1_67">
+        <hasLowerRankThan rdf:resource="#wking_c2_67"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_67"/>
+        <hasLowerFileThan rdf:resource="#wrook_f8_67"/>
+        <hasLowerRankThan rdf:resource="#wrook_f8_67"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_69 -->
+
+    <BKing rdf:about="#bking_a1_69">
+        <hasLowerFileThan rdf:resource="#wrook_g4_69"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_69"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_69"/>
+        <hasLowerRankThan rdf:resource="#wrook_g4_69"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_7 -->
+
+    <BKing rdf:about="#bking_a1_7">
+        <hasLowerRankThan rdf:resource="#wrook_a3_7"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_7"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_7"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_71 -->
+
+    <BKing rdf:about="#bking_a1_71">
+        <hasLowerFileThan rdf:resource="#wking_c2_71"/>
+        <hasLowerRankThan rdf:resource="#wrook_g5_71"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_71"/>
+        <hasLowerFileThan rdf:resource="#wrook_g5_71"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_72 -->
+
+    <BKing rdf:about="#bking_a1_72">
+        <hasLowerRankThan rdf:resource="#wrook_g6_72"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_72"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_72"/>
+        <hasLowerFileThan rdf:resource="#wrook_g6_72"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_73 -->
+
+    <BKing rdf:about="#bking_a1_73">
+        <hasLowerRankThan rdf:resource="#wking_c2_73"/>
+        <hasLowerRankThan rdf:resource="#wrook_g7_73"/>
+        <hasLowerFileThan rdf:resource="#wrook_g7_73"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_73"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_74 -->
+
+    <BKing rdf:about="#bking_a1_74">
+        <hasLowerRankThan rdf:resource="#wrook_g8_74"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_74"/>
+        <hasLowerFileThan rdf:resource="#wrook_g8_74"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_74"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_76 -->
+
+    <BKing rdf:about="#bking_a1_76">
+        <hasLowerRankThan rdf:resource="#wrook_h4_76"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_76"/>
+        <hasLowerFileThan rdf:resource="#wrook_h4_76"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_76"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_78 -->
+
+    <BKing rdf:about="#bking_a1_78">
+        <hasLowerFileThan rdf:resource="#wrook_h5_78"/>
+        <hasLowerRankThan rdf:resource="#wrook_h5_78"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_78"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_78"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_79 -->
+
+    <BKing rdf:about="#bking_a1_79">
+        <hasLowerFileThan rdf:resource="#wking_c2_79"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_79"/>
+        <hasLowerRankThan rdf:resource="#wrook_h6_79"/>
+        <hasLowerFileThan rdf:resource="#wrook_h6_79"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_8 -->
+
+    <BKing rdf:about="#bking_a1_8">
+        <hasLowerFileThan rdf:resource="#wking_c2_8"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_8"/>
+        <hasLowerRankThan rdf:resource="#wrook_a4_8"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_80 -->
+
+    <BKing rdf:about="#bking_a1_80">
+        <hasLowerFileThan rdf:resource="#wrook_h7_80"/>
+        <hasLowerRankThan rdf:resource="#wking_c2_80"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_80"/>
+        <hasLowerRankThan rdf:resource="#wrook_h7_80"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a1_81 -->
+
+    <BKing rdf:about="#bking_a1_81">
+        <hasLowerRankThan rdf:resource="#wking_c2_81"/>
+        <hasLowerRankThan rdf:resource="#wrook_h8_81"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_81"/>
+        <hasLowerFileThan rdf:resource="#wrook_h8_81"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_11 -->
+
+    <BKing rdf:about="#bking_a2_11">
+        <hasLowerRankThan rdf:resource="#wrook_a5_11"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_11"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_13 -->
+
+    <BKing rdf:about="#bking_a2_13">
+        <hasLowerFileThan rdf:resource="#wking_c2_13"/>
+        <hasLowerRankThan rdf:resource="#wrook_a6_13"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_15 -->
+
+    <BKing rdf:about="#bking_a2_15">
+        <hasLowerRankThan rdf:resource="#wrook_a7_15"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_15"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_17 -->
+
+    <BKing rdf:about="#bking_a2_17">
+        <hasLowerRankThan rdf:resource="#wrook_a8_17"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_17"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_28 -->
+
+    <BKing rdf:about="#bking_a2_28">
+        <hasLowerFileThan rdf:resource="#wking_c1_28"/>
+        <hasLowerFileThan rdf:resource="#wrook_c3_28"/>
+        <hasLowerRankThan rdf:resource="#wrook_c3_28"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_29 -->
+
+    <BKing rdf:about="#bking_a2_29">
+        <hasLowerFileThan rdf:resource="#wking_c1_29"/>
+        <hasLowerRankThan rdf:resource="#wrook_d3_29"/>
+        <hasLowerFileThan rdf:resource="#wrook_d3_29"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_30 -->
+
+    <BKing rdf:about="#bking_a2_30">
+        <hasLowerRankThan rdf:resource="#wrook_e3_30"/>
+        <hasLowerFileThan rdf:resource="#wrook_e3_30"/>
+        <hasLowerFileThan rdf:resource="#wking_c1_30"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_31 -->
+
+    <BKing rdf:about="#bking_a2_31">
+        <hasLowerFileThan rdf:resource="#wking_c1_31"/>
+        <hasLowerRankThan rdf:resource="#wrook_f3_31"/>
+        <hasLowerFileThan rdf:resource="#wrook_f3_31"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_32 -->
+
+    <BKing rdf:about="#bking_a2_32">
+        <hasLowerRankThan rdf:resource="#wrook_g3_32"/>
+        <hasLowerFileThan rdf:resource="#wking_c1_32"/>
+        <hasLowerFileThan rdf:resource="#wrook_g3_32"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_33 -->
+
+    <BKing rdf:about="#bking_a2_33">
+        <hasLowerFileThan rdf:resource="#wrook_h3_33"/>
+        <hasLowerRankThan rdf:resource="#wrook_h3_33"/>
+        <hasLowerFileThan rdf:resource="#wking_c1_33"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_34 -->
+
+    <BKing rdf:about="#bking_a2_34">
+        <hasLowerFileThan rdf:resource="#wking_c2_34"/>
+        <hasLowerFileThan rdf:resource="#wrook_b3_34"/>
+        <hasLowerRankThan rdf:resource="#wrook_b3_34"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_40 -->
+
+    <BKing rdf:about="#bking_a2_40">
+        <hasLowerFileThan rdf:resource="#wking_c2_40"/>
+        <hasLowerRankThan rdf:resource="#wrook_c3_40"/>
+        <hasLowerFileThan rdf:resource="#wrook_c3_40"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_47 -->
+
+    <BKing rdf:about="#bking_a2_47">
+        <hasLowerRankThan rdf:resource="#wrook_d3_47"/>
+        <hasLowerFileThan rdf:resource="#wrook_d3_47"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_47"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_54 -->
+
+    <BKing rdf:about="#bking_a2_54">
+        <hasLowerFileThan rdf:resource="#wrook_e3_54"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_54"/>
+        <hasLowerRankThan rdf:resource="#wrook_e3_54"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_61 -->
+
+    <BKing rdf:about="#bking_a2_61">
+        <hasLowerRankThan rdf:resource="#wrook_f3_61"/>
+        <hasLowerFileThan rdf:resource="#wrook_f3_61"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_61"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_68 -->
+
+    <BKing rdf:about="#bking_a2_68">
+        <hasLowerFileThan rdf:resource="#wrook_g3_68"/>
+        <hasLowerRankThan rdf:resource="#wrook_g3_68"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_68"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_75 -->
+
+    <BKing rdf:about="#bking_a2_75">
+        <hasLowerRankThan rdf:resource="#wrook_h3_75"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_75"/>
+        <hasLowerFileThan rdf:resource="#wrook_h3_75"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a2_9 -->
+
+    <BKing rdf:about="#bking_a2_9">
+        <hasLowerFileThan rdf:resource="#wking_c2_9"/>
+        <hasLowerRankThan rdf:resource="#wrook_a4_9"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a3_42 -->
+
+    <BKing rdf:about="#bking_a3_42">
+        <hasLowerFileThan rdf:resource="#wking_c2_42"/>
+        <hasLowerRankThan rdf:resource="#wrook_c4_42"/>
+        <hasLowerFileThan rdf:resource="#wrook_c4_42"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a3_49 -->
+
+    <BKing rdf:about="#bking_a3_49">
+        <hasLowerFileThan rdf:resource="#wrook_d4_49"/>
+        <hasLowerRankThan rdf:resource="#wrook_d4_49"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_49"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a3_56 -->
+
+    <BKing rdf:about="#bking_a3_56">
+        <hasLowerRankThan rdf:resource="#wrook_e4_56"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_56"/>
+        <hasLowerFileThan rdf:resource="#wrook_e4_56"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a3_63 -->
+
+    <BKing rdf:about="#bking_a3_63">
+        <hasLowerFileThan rdf:resource="#wking_c2_63"/>
+        <hasLowerFileThan rdf:resource="#wrook_f4_63"/>
+        <hasLowerRankThan rdf:resource="#wrook_f4_63"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a3_70 -->
+
+    <BKing rdf:about="#bking_a3_70">
+        <hasLowerFileThan rdf:resource="#wrook_g4_70"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_70"/>
+        <hasLowerRankThan rdf:resource="#wrook_g4_70"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_a3_77 -->
+
+    <BKing rdf:about="#bking_a3_77">
+        <hasLowerRankThan rdf:resource="#wrook_h4_77"/>
+        <hasLowerFileThan rdf:resource="#wrook_h4_77"/>
+        <hasLowerFileThan rdf:resource="#wking_c2_77"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_b1_82 -->
+
+    <BKing rdf:about="#bking_b1_82">
+        <hasLowerRankThan rdf:resource="#wking_c3_82"/>
+        <hasLowerFileThan rdf:resource="#wking_c3_82"/>
+        <hasLowerRankThan rdf:resource="#wrook_a3_82"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_b1_83 -->
+
+    <BKing rdf:about="#bking_b1_83">
+        <hasLowerRankThan rdf:resource="#wking_c3_83"/>
+        <hasLowerRankThan rdf:resource="#wrook_a4_83"/>
+        <hasLowerFileThan rdf:resource="#wking_c3_83"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_b1_84 -->
+
+    <BKing rdf:about="#bking_b1_84">
+        <hasLowerRankThan rdf:resource="#wrook_a5_84"/>
+        <hasLowerRankThan rdf:resource="#wking_c3_84"/>
+        <hasLowerFileThan rdf:resource="#wking_c3_84"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_b1_85 -->
+
+    <BKing rdf:about="#bking_b1_85">
+        <hasLowerRankThan rdf:resource="#wking_c3_85"/>
+        <hasLowerFileThan rdf:resource="#wking_c3_85"/>
+        <hasLowerRankThan rdf:resource="#wrook_a6_85"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_b1_86 -->
+
+    <BKing rdf:about="#bking_b1_86">
+        <hasLowerRankThan rdf:resource="#wking_c3_86"/>
+        <hasLowerRankThan rdf:resource="#wrook_a7_86"/>
+        <hasLowerFileThan rdf:resource="#wking_c3_86"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_b1_87 -->
+
+    <BKing rdf:about="#bking_b1_87">
+        <hasLowerRankThan rdf:resource="#wking_c3_87"/>
+        <hasLowerRankThan rdf:resource="#wrook_a8_87"/>
+        <hasLowerFileThan rdf:resource="#wking_c3_87"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_c1_18 -->
+
+    <BKing rdf:about="#bking_c1_18">
+        <hasLowerRankThan rdf:resource="#wking_c3_18"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_c1_19 -->
+
+    <BKing rdf:about="#bking_c1_19">
+        <hasLowerFileThan rdf:resource="#wrook_e1_19"/>
+        <hasLowerRankThan rdf:resource="#wking_c3_19"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_c1_20 -->
+
+    <BKing rdf:about="#bking_c1_20">
+        <hasLowerRankThan rdf:resource="#wking_c3_20"/>
+        <hasLowerFileThan rdf:resource="#wrook_f1_20"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_c1_21 -->
+
+    <BKing rdf:about="#bking_c1_21">
+        <hasLowerFileThan rdf:resource="#wrook_g1_21"/>
+        <hasLowerRankThan rdf:resource="#wking_c3_21"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_c1_22 -->
+
+    <BKing rdf:about="#bking_c1_22">
+        <hasLowerFileThan rdf:resource="#wrook_h1_22"/>
+        <hasLowerRankThan rdf:resource="#wking_c3_22"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_c1_94 -->
+
+    <BKing rdf:about="#bking_c1_94">
+        <hasLowerFileThan rdf:resource="#wking_d3_94"/>
+        <hasLowerRankThan rdf:resource="#wking_d3_94"/>
+        <hasLowerRankThan rdf:resource="#wrook_b3_94"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_c1_95 -->
+
+    <BKing rdf:about="#bking_c1_95">
+        <hasLowerFileThan rdf:resource="#wking_d3_95"/>
+        <hasLowerRankThan rdf:resource="#wrook_b4_95"/>
+        <hasLowerRankThan rdf:resource="#wking_d3_95"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_c1_96 -->
+
+    <BKing rdf:about="#bking_c1_96">
+        <hasLowerRankThan rdf:resource="#wking_d3_96"/>
+        <hasLowerFileThan rdf:resource="#wking_d3_96"/>
+        <hasLowerRankThan rdf:resource="#wrook_b5_96"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_c1_97 -->
+
+    <BKing rdf:about="#bking_c1_97">
+        <hasLowerRankThan rdf:resource="#wrook_b6_97"/>
+        <hasLowerFileThan rdf:resource="#wking_d3_97"/>
+        <hasLowerRankThan rdf:resource="#wking_d3_97"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_c1_98 -->
+
+    <BKing rdf:about="#bking_c1_98">
+        <hasLowerRankThan rdf:resource="#wrook_b7_98"/>
+        <hasLowerFileThan rdf:resource="#wking_d3_98"/>
+        <hasLowerRankThan rdf:resource="#wking_d3_98"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_c1_99 -->
+
+    <BKing rdf:about="#bking_c1_99">
+        <hasLowerRankThan rdf:resource="#wrook_b8_99"/>
+        <hasLowerRankThan rdf:resource="#wking_d3_99"/>
+        <hasLowerFileThan rdf:resource="#wking_d3_99"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_d1_23 -->
+
+    <BKing rdf:about="#bking_d1_23">
+        <hasLowerRankThan rdf:resource="#wking_d3_23"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_d1_24 -->
+
+    <BKing rdf:about="#bking_d1_24">
+        <hasLowerRankThan rdf:resource="#wking_d3_24"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_d1_25 -->
+
+    <BKing rdf:about="#bking_d1_25">
+        <hasLowerFileThan rdf:resource="#wrook_f1_25"/>
+        <hasLowerRankThan rdf:resource="#wking_d3_25"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_d1_26 -->
+
+    <BKing rdf:about="#bking_d1_26">
+        <hasLowerFileThan rdf:resource="#wrook_g1_26"/>
+        <hasLowerRankThan rdf:resource="#wking_d3_26"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_d1_27 -->
+
+    <BKing rdf:about="#bking_d1_27">
+        <hasLowerFileThan rdf:resource="#wrook_h1_27"/>
+        <hasLowerRankThan rdf:resource="#wking_d3_27"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_d1_88 -->
+
+    <BKing rdf:about="#bking_d1_88">
+        <hasLowerRankThan rdf:resource="#wrook_e3_88"/>
+        <hasLowerRankThan rdf:resource="#wking_c3_88"/>
+        <hasLowerFileThan rdf:resource="#wrook_e3_88"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_d1_89 -->
+
+    <BKing rdf:about="#bking_d1_89">
+        <hasLowerRankThan rdf:resource="#wking_c3_89"/>
+        <hasLowerRankThan rdf:resource="#wrook_e4_89"/>
+        <hasLowerFileThan rdf:resource="#wrook_e4_89"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_d1_90 -->
+
+    <BKing rdf:about="#bking_d1_90">
+        <hasLowerFileThan rdf:resource="#wrook_e5_90"/>
+        <hasLowerRankThan rdf:resource="#wking_c3_90"/>
+        <hasLowerRankThan rdf:resource="#wrook_e5_90"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_d1_91 -->
+
+    <BKing rdf:about="#bking_d1_91">
+        <hasLowerRankThan rdf:resource="#wrook_e6_91"/>
+        <hasLowerRankThan rdf:resource="#wking_c3_91"/>
+        <hasLowerFileThan rdf:resource="#wrook_e6_91"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_d1_92 -->
+
+    <BKing rdf:about="#bking_d1_92">
+        <hasLowerRankThan rdf:resource="#wrook_e7_92"/>
+        <hasLowerRankThan rdf:resource="#wking_c3_92"/>
+        <hasLowerFileThan rdf:resource="#wrook_e7_92"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_d1_93 -->
+
+    <BKing rdf:about="#bking_d1_93">
+        <hasLowerRankThan rdf:resource="#wking_c3_93"/>
+        <hasLowerRankThan rdf:resource="#wrook_e8_93"/>
+        <hasLowerFileThan rdf:resource="#wrook_e8_93"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_e1_100 -->
+
+    <BKing rdf:about="#bking_e1_100">
+        <hasLowerRankThan rdf:resource="#wking_d3_100"/>
+        <hasLowerRankThan rdf:resource="#wrook_f3_100"/>
+        <hasLowerFileThan rdf:resource="#wrook_f3_100"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_e1_101 -->
+
+    <BKing rdf:about="#bking_e1_101">
+        <hasLowerRankThan rdf:resource="#wking_d3_101"/>
+        <hasLowerFileThan rdf:resource="#wrook_f4_101"/>
+        <hasLowerRankThan rdf:resource="#wrook_f4_101"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_e1_102 -->
+
+    <BKing rdf:about="#bking_e1_102">
+        <hasLowerFileThan rdf:resource="#wrook_f5_102"/>
+        <hasLowerRankThan rdf:resource="#wking_d3_102"/>
+        <hasLowerRankThan rdf:resource="#wrook_f5_102"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_e1_103 -->
+
+    <BKing rdf:about="#bking_e1_103">
+        <hasLowerRankThan rdf:resource="#wking_d3_103"/>
+        <hasLowerFileThan rdf:resource="#wrook_f6_103"/>
+        <hasLowerRankThan rdf:resource="#wrook_f6_103"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_e1_104 -->
+
+    <BKing rdf:about="#bking_e1_104">
+        <hasLowerRankThan rdf:resource="#wrook_f7_104"/>
+        <hasLowerFileThan rdf:resource="#wrook_f7_104"/>
+        <hasLowerRankThan rdf:resource="#wking_d3_104"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#bking_e1_105 -->
+
+    <BKing rdf:about="#bking_e1_105">
+        <hasLowerRankThan rdf:resource="#wking_d3_105"/>
+        <hasLowerRankThan rdf:resource="#wrook_f8_105"/>
+        <hasLowerFileThan rdf:resource="#wrook_f8_105"/>
+    </BKing>
+    
+
+
+    <!-- http://www.test.de/test#game1 -->
+
+    <ZERO rdf:about="#game1">
+        <rdf:type rdf:resource="#Game"/>
+        <hasPiece rdf:resource="#wking_c1_1"/>
+        <hasPiece rdf:resource="#wrook_a3_1"/>
+        <hasPiece rdf:resource="#bking_a1_1"/>
+    </ZERO>
+    
+
+
+    <!-- http://www.test.de/test#game10 -->
+
+    <ZERO rdf:about="#game10">
+        <rdf:type rdf:resource="#Game"/>
+        <hasPiece rdf:resource="#wrook_a5_10"/>
+        <hasPiece rdf:resource="#bking_a1_10"/>
+        <hasPiece rdf:resource="#wking_c2_10"/>
+    </ZERO>
+    
+
+
+    <!-- http://www.test.de/test#game100 -->
+
+    <Game rdf:about="#game100">
+        <rdf:type rdf:resource="#ONE"/>
+        <hasPiece rdf:resource="#wking_d3_100"/>
+        <hasPiece rdf:resource="#wrook_f3_100"/>
+        <hasPiece rdf:resource="#bking_e1_100"/>
+    </Game>
+    
+
+
+    <!-- http://www.test.de/test#game101 -->
+
+    <Game rdf:about="#game101">
+        <rdf:type rdf:resource="#ONE"/>
+        <hasPiece rdf:resource="#wrook_f4_101"/>
+        <hasPiece rdf:resource="#bking_e1_101"/>
+        <hasPiece rdf:resource="#wking_d3_101"/>
+    </Game>
+    
+
+
+    <!-- http://www.test.de/test#game102 -->
+
+    <Game ...
 
[truncated message content]

[DL-Learner SVN] SF.net SVN: dl-learner: [747] trunk/src/dl-learner/org/dllearner

From: <ku...@us...> - 2008-04-01 10:46:17

Revision: 747
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=747&view=rev
Author:   kurzum
Date:     2008-04-01 03:46:11 -0700 (Tue, 01 Apr 2008)

Log Message:
-----------
rollback

Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
    trunk/src/dl-learner/org/dllearner/kb/KBFile.java
    trunk/src/dl-learner/org/dllearner/kb/OWLFile.java
    trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
    trunk/src/dl-learner/org/dllearner/learningproblems/PosNegDefinitionLP.java
    trunk/src/dl-learner/org/dllearner/learningproblems/PosNegInclusionLP.java
    trunk/src/dl-learner/org/dllearner/learningproblems/PosOnlyDefinitionLP.java
    trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java
    trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java
    trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java
    trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java

Modified: trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/ComponentManager.java	2008-04-01 10:24:36 UTC (rev 746)
+++ trunk/src/dl-learner/org/dllearner/core/ComponentManager.java	2008-04-01 10:46:11 UTC (rev 747)
@@ -423,21 +423,22 @@
 		String str = componentDescription + "\n";
 		String usage ="";
 		
-		usage =  invokeStaticMethod(component,"getUsage")+"";
+		//usage =  invokeStaticMethod(component,"getUsage")+"";
 		
 		
-		if(usage.equals("null")) {
+		/*if(usage.equals("null")) {
 			System.out.println("Component "+component.getName()+" needs Usage definition");
 		}
 		else	{
 			System.out.println(usage +" |in| "+ component.getName());
 		}
+		*/
 		
 		for(int i=0; i<componentDescription.length(); i++)
 			str += "=";
 		str += "\n\n";
 		
-		str += "Usage:\n"+usage+"\n\n";
+		//str += "Usage:\n"+usage+"\n\n";
 		
 		for(ConfigOption<?> option : componentOptions.get(component)) {
 			str += option.toString() + "\n";

Modified: trunk/src/dl-learner/org/dllearner/kb/KBFile.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/KBFile.java	2008-04-01 10:24:36 UTC (rev 746)
+++ trunk/src/dl-learner/org/dllearner/kb/KBFile.java	2008-04-01 10:46:11 UTC (rev 747)
@@ -83,9 +83,6 @@
 		return "KB file";
 	}
 	
-	public static String getUsage() {
-		return "import(\"kbFileName.kb\");";
-	}
 
 	public static Collection<ConfigOption<?>> createConfigOptions() {
 		Collection<ConfigOption<?>> options = new LinkedList<ConfigOption<?>>();

Modified: trunk/src/dl-learner/org/dllearner/kb/OWLFile.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/OWLFile.java	2008-04-01 10:24:36 UTC (rev 746)
+++ trunk/src/dl-learner/org/dllearner/kb/OWLFile.java	2008-04-01 10:46:11 UTC (rev 747)
@@ -48,9 +48,6 @@
 		return "OWL file";
 	}
 	
-	public static String getUsage() {
-		return "import(\"owlFileName.owl\");";
-	}
 	
 
 	public static Collection<ConfigOption<?>> createConfigOptions() {

Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java	2008-04-01 10:24:36 UTC (rev 746)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java	2008-04-01 10:46:11 UTC (rev 747)
@@ -104,9 +104,7 @@
 	public static String getName() {
 		return "SPARQL Endpoint";
 	}
-	public static String getUsage() {
-		return "Example: import(\"http://dbpedia.openlinksw.com:8890/sparql\",\"SPARQL\");";
-	}
+	
 
 	private static Logger logger = Logger
 			.getLogger(SparqlKnowledgeSource.class);

Modified: trunk/src/dl-learner/org/dllearner/learningproblems/PosNegDefinitionLP.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/learningproblems/PosNegDefinitionLP.java	2008-04-01 10:24:36 UTC (rev 746)
+++ trunk/src/dl-learner/org/dllearner/learningproblems/PosNegDefinitionLP.java	2008-04-01 10:46:11 UTC (rev 747)
@@ -65,9 +65,6 @@
 		return "two valued definition learning problem";
 	}
 	
-	public static String getUsage() {
-		return "problem = XXX DEFAULT";
-	}
 
 	public static Collection<ConfigOption<?>> createConfigOptions() {
 		return PosNegLP.createConfigOptions();

Modified: trunk/src/dl-learner/org/dllearner/learningproblems/PosNegInclusionLP.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/learningproblems/PosNegInclusionLP.java	2008-04-01 10:24:36 UTC (rev 746)
+++ trunk/src/dl-learner/org/dllearner/learningproblems/PosNegInclusionLP.java	2008-04-01 10:46:11 UTC (rev 747)
@@ -76,11 +76,7 @@
 		return "inclusion learning problem";
 	}
 
-	public static String getUsage() {
-		return "problem = posNegInclusion;";
-	}
-	
-	
+		
 	/*
 	 * (non-Javadoc)
 	 * 

Modified: trunk/src/dl-learner/org/dllearner/learningproblems/PosOnlyDefinitionLP.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/learningproblems/PosOnlyDefinitionLP.java	2008-04-01 10:24:36 UTC (rev 746)
+++ trunk/src/dl-learner/org/dllearner/learningproblems/PosOnlyDefinitionLP.java	2008-04-01 10:46:11 UTC (rev 747)
@@ -46,10 +46,7 @@
 	public static String getName() {
 		return "positive only definition learning problem";
 	}
-	
-	public static String getUsage() {
-		return "problem = posOnlyDefinition;";
-	}	
+		
 
 	/* (non-Javadoc)
 	 * @see org.dllearner.core.Component#init()

Modified: trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java	2008-04-01 10:24:36 UTC (rev 746)
+++ trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java	2008-04-01 10:46:11 UTC (rev 747)
@@ -174,9 +174,6 @@
 		return "DIG reasoner";
 	}
 	
-	public static String getUsage() {
-		return "reasoner = dig;";
-	}	
 
 	public static Collection<ConfigOption<?>> createConfigOptions() {
 		Collection<ConfigOption<?>> options = new LinkedList<ConfigOption<?>>();

Modified: trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java	2008-04-01 10:24:36 UTC (rev 746)
+++ trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java	2008-04-01 10:46:11 UTC (rev 747)
@@ -133,10 +133,7 @@
 		return "fast instance checker";
 	}	
 	
-	public static String getUsage() {
-		return "reasoner = fastInstanceChecker;";
-	}	
-	
+
 	/*
 	 * (non-Javadoc)
 	 * 

Modified: trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java	2008-04-01 10:24:36 UTC (rev 746)
+++ trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java	2008-04-01 10:46:11 UTC (rev 747)
@@ -152,10 +152,8 @@
 		return "fast retrieval reasoner";
 	} 	
 	
-	public static String getUsage() {
-		return "reasoner = XXX;";
-	}	
 	
+	
 	/* (non-Javadoc)
 	 * @see org.dllearner.core.Component#applyConfigEntry(org.dllearner.core.ConfigEntry)
 	 */

Modified: trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java	2008-04-01 10:24:36 UTC (rev 746)
+++ trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java	2008-04-01 10:46:11 UTC (rev 747)
@@ -158,9 +158,6 @@
 		return "OWL API reasoner";
 	}	
 	
-	public static String getUsage() {
-		return "reasoner = owlAPI;";
-	}	
 	
 	public static Collection<ConfigOption<?>> createConfigOptions() {
 		Collection<ConfigOption<?>> options = new LinkedList<ConfigOption<?>>();


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[DL-Learner SVN] SF.net SVN: dl-learner: [746] trunk/doc/configOptions.txt

From: <ku...@us...> - 2008-04-01 10:24:42

Revision: 746
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=746&view=rev
Author:   kurzum
Date:     2008-04-01 03:24:36 -0700 (Tue, 01 Apr 2008)

Log Message:
-----------
updated docs

Modified Paths:
--------------
    trunk/doc/configOptions.txt

Modified: trunk/doc/configOptions.txt
===================================================================
--- trunk/doc/configOptions.txt	2008-04-01 10:23:30 UTC (rev 745)
+++ trunk/doc/configOptions.txt	2008-04-01 10:24:36 UTC (rev 746)
@@ -7,6 +7,9 @@
 component: KB file (org.dllearner.kb.KBFile)
 ============================================
 
+Usage:
+import("kbFileName.kb");
+
 option name: filename
 description: pointer to the KB file on local file system
 values: class org.dllearner.core.config.StringConfigOption
@@ -20,6 +23,9 @@
 component: OWL file (org.dllearner.kb.OWLFile)
 ==============================================
 
+Usage:
+import("owlFileName.owl");
+
 option name: url
 description: URL pointing to the OWL file
 values: class org.dllearner.core.config.StringConfigOption
@@ -28,6 +34,9 @@
 component: SPARQL Endpoint (org.dllearner.kb.sparql.SparqlKnowledgeSource)
 ==========================================================================
 
+Usage:
+Example: import("http://dbpedia.openlinksw.com:8890/sparql","SPARQL");
+
 option name: url
 description: URL of SPARQL Endpoint
 values: class org.dllearner.core.config.StringConfigOption
@@ -160,6 +169,9 @@
 component: DIG reasoner (org.dllearner.reasoning.DIGReasoner)
 =============================================================
 
+Usage:
+reasoner = dig;
+
 option name: reasonerUrl
 description: URL of the DIG reasoner
 values: class org.dllearner.core.config.StringConfigOption
@@ -175,12 +187,24 @@
 values: class org.dllearner.core.config.StringConfigOption
 default value: log/digProtocol.txt
 
+component: fast instance checker (org.dllearner.reasoning.FastInstanceChecker)
+==============================================================================
+
+Usage:
+reasoner = fastInstanceChecker;
+
 component: fast retrieval reasoner (org.dllearner.reasoning.FastRetrievalReasoner)
 ==================================================================================
 
+Usage:
+reasoner = XXX;
+
 component: OWL API reasoner (org.dllearner.reasoning.OWLAPIReasoner)
 ====================================================================
 
+Usage:
+reasoner = owlAPI;
+
 option name: reasonerType
 description: FaCT++ or Pellet
 values: class org.dllearner.core.config.StringConfigOption
@@ -193,6 +217,9 @@
 component: two valued definition learning problem (org.dllearner.learningproblems.PosNegDefinitionLP)
 =====================================================================================================
 
+Usage:
+problem = XXX DEFAULT
+
 option name: positiveExamples
 description: positive examples
 values: class org.dllearner.core.config.StringSetConfigOption
@@ -221,6 +248,9 @@
 component: inclusion learning problem (org.dllearner.learningproblems.PosNegInclusionLP)
 ========================================================================================
 
+Usage:
+problem = posNegInclusion;
+
 option name: positiveExamples
 description: positive examples
 values: class org.dllearner.core.config.StringSetConfigOption
@@ -249,6 +279,9 @@
 component: positive only definition learning problem (org.dllearner.learningproblems.PosOnlyDefinitionLP)
 =========================================================================================================
 
+Usage:
+problem = posOnlyDefinition;
+
 option name: positiveExamples
 description: positive examples
 values: class org.dllearner.core.config.StringSetConfigOption
@@ -261,6 +294,9 @@
 component: brute force learning algorithm (org.dllearner.algorithms.BruteForceLearner)
 ======================================================================================
 
+Usage:
+null
+
 option name: maxLength
 description: maximum length of generated concepts
 values: class org.dllearner.core.config.IntegerConfigOption
@@ -274,6 +310,9 @@
 component: random guesser learning algorithm (org.dllearner.algorithms.RandomGuesser)
 =====================================================================================
 
+Usage:
+null
+
 option name: numberOfTrees
 description: number of randomly generated concepts/trees
 values: class org.dllearner.core.config.IntegerConfigOption
@@ -287,6 +326,9 @@
 component: genetic programming learning algorithm (org.dllearner.algorithms.gp.GP)
 ==================================================================================
 
+Usage:
+null
+
 option name: selectionType
 description: selection type
 values: class org.dllearner.core.config.StringConfigOption
@@ -370,6 +412,9 @@
 component: example driven refinement operator based learning algorithm (org.dllearner.algorithms.refexamples.ExampleBasedROLComponent)
 ======================================================================================================================================
 
+Usage:
+algorithm = refexamples;
+
 option name: writeSearchTree
 description: specifies whether to write a search tree
 values: class org.dllearner.core.config.BooleanConfigOption
@@ -460,14 +505,27 @@
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
 
+option name: useBooleanDatatypes
+description: specifies whether boolean datatypes are used in the learning algorothm
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: null
+
 option name: noisePercentage
 description: the (approximated) percentage of noise within the examples
-values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 1.0
+values: class org.dllearner.core.config.DoubleConfigOption min 0.0 max 100.0
 default value: null
 
+option name: startClass
+description: the named class which should be used to start the algorithm (GUI: needs a widget for selecting a class)
+values: class org.dllearner.core.config.StringConfigOption
+default value: null
+
 component: refinement operator based learning algorithm (org.dllearner.algorithms.refinement.ROLearner)
 =======================================================================================================
 
+Usage:
+algorithm = refinement;
+
 option name: writeSearchTree
 description: specifies whether to write a search tree
 values: class org.dllearner.core.config.BooleanConfigOption
@@ -563,3 +621,8 @@
 values: class org.dllearner.core.config.BooleanConfigOption
 default value: null
 
+option name: useBooleanDatatypes
+description: specifies whether boolean datatypes are used in the learning algorothm
+values: class org.dllearner.core.config.BooleanConfigOption
+default value: null
+


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[DL-Learner SVN] SF.net SVN: dl-learner: [745] trunk/src/dl-learner/org/dllearner

From: <ku...@us...> - 2008-04-01 10:23:37

Revision: 745
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=745&view=rev
Author:   kurzum
Date:     2008-04-01 03:23:30 -0700 (Tue, 01 Apr 2008)

Log Message:
-----------
added function getUsage() to components for writing a better doc file.
implemented it in some component, where I was sure.

added some output to ConfigOptionScriptGenerator, respectively to ComponentManager

Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLComponent.java
    trunk/src/dl-learner/org/dllearner/algorithms/refinement/ROLearner.java
    trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
    trunk/src/dl-learner/org/dllearner/kb/KBFile.java
    trunk/src/dl-learner/org/dllearner/kb/OWLFile.java
    trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
    trunk/src/dl-learner/org/dllearner/learningproblems/PosNegDefinitionLP.java
    trunk/src/dl-learner/org/dllearner/learningproblems/PosNegInclusionLP.java
    trunk/src/dl-learner/org/dllearner/learningproblems/PosOnlyDefinitionLP.java
    trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java
    trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java
    trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java
    trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java

Modified: trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLComponent.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLComponent.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLComponent.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -324,6 +324,10 @@
 		return "example driven refinement operator based learning algorithm";
 	}
 	
+	public static String getUsage() {
+		return "algorithm = refexamples;";
+	}
+	
 	@Override
 	public void start() {
 		algorithm.start();

Modified: trunk/src/dl-learner/org/dllearner/algorithms/refinement/ROLearner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refinement/ROLearner.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refinement/ROLearner.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -327,6 +327,10 @@
 		return "refinement operator based learning algorithm";
 	}
 	
+	public static String getUsage() {
+		return "algorithm = refinement;";
+	}
+	
 	private int coveredNegativesOrTooWeak(Description concept) {
 		if(posOnly)
 			return posOnlyLearningProblem.coveredPseudoNegativeExamplesOrTooWeak(concept);

Modified: trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/ComponentManager.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/core/ComponentManager.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -421,10 +421,24 @@
 	private String getComponentConfigString(Class<? extends Component> component) {
 		String componentDescription =  "component: " + invokeStaticMethod(component,"getName") + " (" + component.getName() + ")";
 		String str = componentDescription + "\n";
+		String usage ="";
+		
+		usage =  invokeStaticMethod(component,"getUsage")+"";
+		
+		
+		if(usage.equals("null")) {
+			System.out.println("Component "+component.getName()+" needs Usage definition");
+		}
+		else	{
+			System.out.println(usage +" |in| "+ component.getName());
+		}
+		
 		for(int i=0; i<componentDescription.length(); i++)
 			str += "=";
 		str += "\n\n";
 		
+		str += "Usage:\n"+usage+"\n\n";
+		
 		for(ConfigOption<?> option : componentOptions.get(component)) {
 			str += option.toString() + "\n";
 		}		

Modified: trunk/src/dl-learner/org/dllearner/kb/KBFile.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/KBFile.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/kb/KBFile.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -82,6 +82,10 @@
 	public static String getName() {
 		return "KB file";
 	}
+	
+	public static String getUsage() {
+		return "import(\"kbFileName.kb\");";
+	}
 
 	public static Collection<ConfigOption<?>> createConfigOptions() {
 		Collection<ConfigOption<?>> options = new LinkedList<ConfigOption<?>>();

Modified: trunk/src/dl-learner/org/dllearner/kb/OWLFile.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/OWLFile.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/kb/OWLFile.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -47,6 +47,11 @@
 	public static String getName() {
 		return "OWL file";
 	}
+	
+	public static String getUsage() {
+		return "import(\"owlFileName.owl\");";
+	}
+	
 
 	public static Collection<ConfigOption<?>> createConfigOptions() {
 		Collection<ConfigOption<?>> options = new LinkedList<ConfigOption<?>>();

Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlKnowledgeSource.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -104,6 +104,9 @@
 	public static String getName() {
 		return "SPARQL Endpoint";
 	}
+	public static String getUsage() {
+		return "Example: import(\"http://dbpedia.openlinksw.com:8890/sparql\",\"SPARQL\");";
+	}
 
 	private static Logger logger = Logger
 			.getLogger(SparqlKnowledgeSource.class);

Modified: trunk/src/dl-learner/org/dllearner/learningproblems/PosNegDefinitionLP.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/learningproblems/PosNegDefinitionLP.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/learningproblems/PosNegDefinitionLP.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -64,6 +64,10 @@
 	public static String getName() {
 		return "two valued definition learning problem";
 	}
+	
+	public static String getUsage() {
+		return "problem = XXX DEFAULT";
+	}
 
 	public static Collection<ConfigOption<?>> createConfigOptions() {
 		return PosNegLP.createConfigOptions();

Modified: trunk/src/dl-learner/org/dllearner/learningproblems/PosNegInclusionLP.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/learningproblems/PosNegInclusionLP.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/learningproblems/PosNegInclusionLP.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -76,6 +76,11 @@
 		return "inclusion learning problem";
 	}
 
+	public static String getUsage() {
+		return "problem = posNegInclusion;";
+	}
+	
+	
 	/*
 	 * (non-Javadoc)
 	 * 

Modified: trunk/src/dl-learner/org/dllearner/learningproblems/PosOnlyDefinitionLP.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/learningproblems/PosOnlyDefinitionLP.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/learningproblems/PosOnlyDefinitionLP.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -46,6 +46,10 @@
 	public static String getName() {
 		return "positive only definition learning problem";
 	}
+	
+	public static String getUsage() {
+		return "problem = posOnlyDefinition;";
+	}	
 
 	/* (non-Javadoc)
 	 * @see org.dllearner.core.Component#init()

Modified: trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/reasoning/DIGReasoner.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -173,6 +173,10 @@
 	public static String getName() {
 		return "DIG reasoner";
 	}
+	
+	public static String getUsage() {
+		return "reasoner = dig;";
+	}	
 
 	public static Collection<ConfigOption<?>> createConfigOptions() {
 		Collection<ConfigOption<?>> options = new LinkedList<ConfigOption<?>>();

Modified: trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/reasoning/FastInstanceChecker.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -133,6 +133,10 @@
 		return "fast instance checker";
 	}	
 	
+	public static String getUsage() {
+		return "reasoner = fastInstanceChecker;";
+	}	
+	
 	/*
 	 * (non-Javadoc)
 	 * 

Modified: trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/reasoning/FastRetrievalReasoner.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -150,8 +150,12 @@
 	
 	public static String getName() {
 		return "fast retrieval reasoner";
-	} 		
+	} 	
 	
+	public static String getUsage() {
+		return "reasoner = XXX;";
+	}	
+	
 	/* (non-Javadoc)
 	 * @see org.dllearner.core.Component#applyConfigEntry(org.dllearner.core.ConfigEntry)
 	 */

Modified: trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java	2008-03-31 14:36:13 UTC (rev 744)
+++ trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java	2008-04-01 10:23:30 UTC (rev 745)
@@ -158,6 +158,10 @@
 		return "OWL API reasoner";
 	}	
 	
+	public static String getUsage() {
+		return "reasoner = owlAPI;";
+	}	
+	
 	public static Collection<ConfigOption<?>> createConfigOptions() {
 		Collection<ConfigOption<?>> options = new LinkedList<ConfigOption<?>>();
 		StringConfigOption type = new StringConfigOption("reasonerType", "FaCT++ or Pellet", "pellet");


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[DL-Learner SVN] SF.net SVN: dl-learner: [744] trunk/src/dl-learner/org/dllearner

From: <jen...@us...> - 2008-03-31 14:36:15

Revision: 744
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=744&view=rev
Author:   jenslehmann
Date:     2008-03-31 07:36:13 -0700 (Mon, 31 Mar 2008)

Log Message:
-----------
fix for #1928052

Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
    trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java

Modified: trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/ComponentManager.java	2008-03-31 14:30:50 UTC (rev 743)
+++ trunk/src/dl-learner/org/dllearner/core/ComponentManager.java	2008-03-31 14:36:13 UTC (rev 744)
@@ -71,7 +71,7 @@
 	// you can either use the components.ini file or directly specify the classes to use
 	private static String componentsFile = "lib/components.ini";
 	private static String[] componentClasses = new String[]{}; 
-	private static ComponentManager cm = new ComponentManager();	
+	private static ComponentManager cm = null;	
 
 	// list of all configuration options of all components
 	private static Map<Class<? extends Component>, String> componentNames;

Modified: trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java	2008-03-31 14:30:50 UTC (rev 743)
+++ trunk/src/dl-learner/org/dllearner/reasoning/OWLAPIReasoner.java	2008-03-31 14:36:13 UTC (rev 744)
@@ -27,6 +27,7 @@
 import java.util.Comparator;
 import java.util.HashSet;
 import java.util.LinkedList;
+import java.util.List;
 import java.util.Map;
 import java.util.Set;
 import java.util.SortedSet;
@@ -146,6 +147,9 @@
 	private Map<String, String> prefixes = new TreeMap<String,String>();
 	private String baseURI;
 	
+	// references to OWL API ontologies
+	private List<OWLOntology> owlAPIOntologies = new LinkedList<OWLOntology>();
+	
 	public OWLAPIReasoner(Set<KnowledgeSource> sources) {
 		this.sources = sources;
 	}
@@ -201,6 +205,7 @@
 
 				try {
 					OWLOntology ontology = manager.loadOntologyFromPhysicalURI(url.toURI());
+					owlAPIOntologies.add(ontology);
 					allImports.addAll(manager.getImportsClosure(ontology));
 					classes.addAll(ontology.getReferencedClasses());
 					owlObjectProperties.addAll(ontology.getReferencedObjectProperties());
@@ -234,6 +239,7 @@
 					e.printStackTrace();
 				}
 				OWLAPIAxiomConvertVisitor.fillOWLOntology(manager, ontology, kb);
+				owlAPIOntologies.add(ontology);
 				allImports.add(ontology);
 				atomicConcepts.addAll(kb.findAllAtomicConcepts());
 				atomicRoles.addAll(kb.findAllAtomicRoles());
@@ -1035,4 +1041,8 @@
 		}
 	}
 
+	public List<OWLOntology> getOWLAPIOntologies() {
+		return owlAPIOntologies;
+	}
+
 }


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[DL-Learner SVN] SF.net SVN: dl-learner: [743] trunk/src/dl-learner/org/dllearner/core/ ComponentManager.java

From: <jen...@us...> - 2008-03-31 14:30:54

Revision: 743
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=743&view=rev
Author:   jenslehmann
Date:     2008-03-31 07:30:50 -0700 (Mon, 31 Mar 2008)

Log Message:
-----------
small fix

Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/core/ComponentManager.java

Modified: trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/ComponentManager.java	2008-03-31 14:26:03 UTC (rev 742)
+++ trunk/src/dl-learner/org/dllearner/core/ComponentManager.java	2008-03-31 14:30:50 UTC (rev 743)
@@ -168,6 +168,8 @@
 	 * @return The singleton <code>ComponentManager</code> instance.
 	 */
 	public static ComponentManager getInstance() {
+		if(cm == null)
+			cm = new ComponentManager();
 		return cm;
 	}
 


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[DL-Learner SVN] SF.net SVN: dl-learner: [742] trunk

From: <jen...@us...> - 2008-03-31 14:26:16

Revision: 742
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=742&view=rev
Author:   jenslehmann
Date:     2008-03-31 07:26:03 -0700 (Mon, 31 Mar 2008)

Log Message:
-----------
- fixed errors in ORE
- component classes in component manager can be specified directly

Modified Paths:
--------------
    trunk/examples/carcinogenesis/train.conf
    trunk/examples/krk/test_ZERO_against_1to5.conf
    trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java
    trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java
    trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
    trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java
    trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java
    trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanelDescriptor.java
    trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java

Modified: trunk/examples/carcinogenesis/train.conf
===================================================================
--- trunk/examples/carcinogenesis/train.conf	2008-03-31 14:07:52 UTC (rev 741)
+++ trunk/examples/carcinogenesis/train.conf	2008-03-31 14:26:03 UTC (rev 742)
@@ -2,7 +2,7 @@
 
 reasoner = fastInstanceChecker;
 algorithm = refexamples;
-refexamples.noisePercentage = 29;
+refexamples.noisePercentage = 28;
 refexamples.startClass = "http://dl-learner.org/carcinogenesis#Compound";
 refexamples.writeSearchTree = false;
 refexamples.searchTreeFile = "log/carcinogenesis/searchTree.log";

Modified: trunk/examples/krk/test_ZERO_against_1to5.conf
===================================================================
--- trunk/examples/krk/test_ZERO_against_1to5.conf	2008-03-31 14:07:52 UTC (rev 741)
+++ trunk/examples/krk/test_ZERO_against_1to5.conf	2008-03-31 14:26:03 UTC (rev 742)
@@ -33,8 +33,9 @@
 //algorithm = refinement;
 //refinement.heuristic=flexible;
 reasoner=fastInstanceChecker;
+refexamples.startClass = "http://www.test.de/test#Game";
+refexamples.useAllConstructor = false;
 
-
 /**ZERO**/
 +"http://www.test.de/test#game1"
 +"http://www.test.de/test#game10"

Modified: trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java	2008-03-31 14:07:52 UTC (rev 741)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refexamples/ExampleBasedROLearner.java	2008-03-31 14:26:03 UTC (rev 742)
@@ -312,8 +312,8 @@
 		long lastTreeTraversalTime = System.nanoTime();
 		long lastReductionTime = System.nanoTime();
 		// try a traversal after 100 seconds
-		long traversalInterval = 1000l * 1000000000l;
-		long reductionInterval = 300l * 1000000000l;
+		long traversalInterval = 300l * 1000000000l;
+		long reductionInterval = 500l * 1000000000l;
 		long currentTime;
 		
 		while(!solutionFound && !stop) {		

Modified: trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java	2008-03-31 14:07:52 UTC (rev 741)
+++ trunk/src/dl-learner/org/dllearner/algorithms/refexamples/MultiHeuristic.java	2008-03-31 14:26:03 UTC (rev 742)
@@ -78,7 +78,7 @@
 	private double expansionPenaltyFactor;
 	private double gainBonusFactor;
 	private double nodeChildPenalty = 0.0001;
-	private double startNodeBonus = 1.0;
+	private double startNodeBonus = 2.0;
 	// penalise errors on positive examples harder than on negative examples
 	// (positive weight = 1)
 	private double negativeWeight = 0.8;
@@ -146,7 +146,7 @@
 		// do not count TOP symbols (in particular in ALL r.TOP and EXISTS r.TOP)
 		// as they provide no extra information
 		if(description instanceof Thing)
-			bonus = 1;
+			bonus = 2;
 		
 //		if(description instanceof BooleanValueRestriction)
 //			bonus = -1;
@@ -154,7 +154,7 @@
 		// some bonus for doubles because they are already penalised by length 3
 		if(description instanceof DatatypeSomeRestriction) {
 //			System.out.println(description);
-			bonus = 3;
+			bonus = 2;
 		}
 		
 		List<Description> children = description.getChildren();

Modified: trunk/src/dl-learner/org/dllearner/core/ComponentManager.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/ComponentManager.java	2008-03-31 14:07:52 UTC (rev 741)
+++ trunk/src/dl-learner/org/dllearner/core/ComponentManager.java	2008-03-31 14:26:03 UTC (rev 742)
@@ -28,6 +28,7 @@
 import java.lang.reflect.Constructor;
 import java.lang.reflect.InvocationTargetException;
 import java.lang.reflect.Method;
+import java.util.Arrays;
 import java.util.Collection;
 import java.util.Comparator;
 import java.util.HashMap;
@@ -61,14 +62,16 @@
 
 	private ComponentPool pool = new ComponentPool();
 	
-	// these variables are valid for the complete lifetime of DL-Learner
-	private static String componentsFile = "lib/components.ini";
-	private static ComponentManager cm = new ComponentManager();
+	// these variables are valid for the complete lifetime of a DL-Learner session
 	private static Collection<Class<? extends Component>> components;
 	private static Collection<Class<? extends KnowledgeSource>> knowledgeSources;
 	private static Collection<Class<? extends ReasonerComponent>> reasonerComponents;
 	private static Collection<Class<? extends LearningProblem>> learningProblems;
 	private static Collection<Class<? extends LearningAlgorithm>> learningAlgorithms;
+	// you can either use the components.ini file or directly specify the classes to use
+	private static String componentsFile = "lib/components.ini";
+	private static String[] componentClasses = new String[]{}; 
+	private static ComponentManager cm = new ComponentManager();	
 
 	// list of all configuration options of all components
 	private static Map<Class<? extends Component>, String> componentNames;
@@ -90,7 +93,11 @@
 	@SuppressWarnings( { "unchecked" })
 	private ComponentManager() {
 		// read in components file
-		List<String> componentsString = readComponentsFile();
+		List<String> componentsString;
+		if(componentClasses.length > 0)
+			componentsString = Arrays.asList(componentClasses);
+		else
+			componentsString = readComponentsFile();
 
 		// component list
 		components = new TreeSet<Class<? extends Component>>(classComparator);
@@ -164,6 +171,10 @@
 		return cm;
 	}
 
+	public static void setComponentClasses(String[] componentClasses) {
+		ComponentManager.componentClasses = componentClasses;
+	}
+	
 	private static List<String> readComponentsFile() {
 		List<String> componentStrings = new LinkedList<String>();
 

Modified: trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java	2008-03-31 14:07:52 UTC (rev 741)
+++ trunk/src/dl-learner/org/dllearner/examples/Carcinogenesis.java	2008-03-31 14:26:03 UTC (rev 742)
@@ -260,14 +260,13 @@
 		// generating conf files
 		File confTrainFile = new File("examples/carcinogenesis/train.conf");
 		Files.clearFile(confTrainFile);
-		String confHeader = "import(\"pte.owl\");\n\n";
+		String confHeader = "import(\"carcinogenesis.owl\");\n\n";
 		confHeader += "reasoner = fastInstanceChecker;\n";
 		confHeader += "algorithm = refexamples;\n";
-		confHeader += "refexamples.noisePercentage = 35;\n";
+		confHeader += "refexamples.noisePercentage = 31;\n";
 		confHeader += "refexamples.startClass = " + getURI2("Compound") + ";\n";
 		confHeader += "refexamples.writeSearchTree = false;\n";
 		confHeader += "refexamples.searchTreeFile = \"log/carcinogenesis/searchTree.log\";\n";
-		confHeader += "posNegDefinition.percentPerLengthUnit = 0.10;\n";
 		confHeader += "\n";
 		Files.appendFile(confTrainFile, confHeader);
 		

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java	2008-03-31 14:07:52 UTC (rev 741)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java	2008-03-31 14:26:03 UTC (rev 742)
@@ -37,7 +37,6 @@
     }    
 
 
-	@Override
 	public void valueChanged(ListSelectionEvent e) {
 		setNextButtonAccordingToConceptSelected(); 
 		if (!e.getValueIsAdjusting()) 

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanelDescriptor.java	2008-03-31 14:07:52 UTC (rev 741)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanelDescriptor.java	2008-03-31 14:26:03 UTC (rev 742)
@@ -72,19 +72,16 @@
     }
    
 
-	@Override
 	public void changedUpdate(DocumentEvent e) {
 		setNextButtonAccordingToExistingOWLFile();
 		
 	}
 
-	@Override
 	public void insertUpdate(DocumentEvent e) {
 		setNextButtonAccordingToExistingOWLFile();
 		
 	}
 
-	@Override
 	public void removeUpdate(DocumentEvent e) {
 		setNextButtonAccordingToExistingOWLFile();
 		

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java	2008-03-31 14:07:52 UTC (rev 741)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java	2008-03-31 14:26:03 UTC (rev 742)
@@ -97,7 +97,6 @@
 		void updateList(final List<Description> result) {
 			Runnable doUpdateList = new Runnable() {
 
-				@Override
 				public void run() {
 					panel4.getModel().clear();
 					for (Description d : result) {


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[DL-Learner SVN] SF.net SVN: dl-learner: [741] trunk/lib/protege

From: <hee...@us...> - 2008-03-31 14:07:56

Revision: 741
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=741&view=rev
Author:   heeroyuy
Date:     2008-03-31 07:07:52 -0700 (Mon, 31 Mar 2008)

Log Message:
-----------


Added Paths:
-----------
    trunk/lib/protege/log4j.jar
    trunk/lib/protege/org.protege.editor.core.application.jar
    trunk/lib/protege/org.protege.editor.owl.jar
    trunk/lib/protege/org.semanticweb.owl.owlapi.jar

Added: trunk/lib/protege/log4j.jar
===================================================================
(Binary files differ)


Property changes on: trunk/lib/protege/log4j.jar
___________________________________________________________________
Name: svn:mime-type
   + application/octet-stream

Added: trunk/lib/protege/org.protege.editor.core.application.jar
===================================================================
(Binary files differ)


Property changes on: trunk/lib/protege/org.protege.editor.core.application.jar
___________________________________________________________________
Name: svn:mime-type
   + application/octet-stream

Added: trunk/lib/protege/org.protege.editor.owl.jar
===================================================================
(Binary files differ)


Property changes on: trunk/lib/protege/org.protege.editor.owl.jar
___________________________________________________________________
Name: svn:mime-type
   + application/octet-stream

Added: trunk/lib/protege/org.semanticweb.owl.owlapi.jar
===================================================================
(Binary files differ)


Property changes on: trunk/lib/protege/org.semanticweb.owl.owlapi.jar
___________________________________________________________________
Name: svn:mime-type
   + application/octet-stream


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[DL-Learner SVN] SF.net SVN: dl-learner: [740] trunk/lib/protege/

From: <hee...@us...> - 2008-03-31 14:06:31

Revision: 740
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=740&view=rev
Author:   heeroyuy
Date:     2008-03-31 07:06:28 -0700 (Mon, 31 Mar 2008)

Log Message:
-----------
needed to compile plugin

Added Paths:
-----------
    trunk/lib/protege/


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[DL-Learner SVN] SF.net SVN: dl-learner: [739] trunk/src/dl-learner/org/dllearner/tools

From: <hee...@us...> - 2008-03-31 14:04:21

Revision: 739
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=739&view=rev
Author:   heeroyuy
Date:     2008-03-31 07:04:17 -0700 (Mon, 31 Mar 2008)

Log Message:
-----------
first hello world protege plugin

Added Paths:
-----------
    trunk/src/dl-learner/org/dllearner/tools/protege/
    trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java
    trunk/src/dl-learner/org/dllearner/tools/protege/ButtonList.java
    trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerComponentListener.java
    trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerConfig.java
    trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerOptionTab.java
    trunk/src/dl-learner/org/dllearner/tools/protege/META-INF/
    trunk/src/dl-learner/org/dllearner/tools/protege/META-INF/MANIFEST.MF
    trunk/src/dl-learner/org/dllearner/tools/protege/META-INF/plugin.xml
    trunk/src/dl-learner/org/dllearner/tools/protege/ProtegePlugin.java
    trunk/src/dl-learner/org/dllearner/tools/protege/SuggestClassButton.java

Added: trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/ActionHandler.java	2008-03-31 14:04:17 UTC (rev 739)
@@ -0,0 +1,38 @@
+package org.dllearner.tools.protege;
+
+import java.awt.event.*;
+
+public class ActionHandler implements ActionListener, ComponentListener{
+	private ActionHandler action;
+   
+	
+	public ActionHandler(ActionHandler a)
+	{
+		action = a;
+	}
+	public void actionPerformed(ActionEvent z){
+		System.out.println("hihihi: "+ z.getActionCommand());
+    	}
+
+	public void componentHidden(ComponentEvent e)
+	{
+		System.out.println("1: "+e.getID());
+	}
+	
+	public void componentMoved(ComponentEvent e)
+	{
+		System.out.println("2: "+ e.getComponent().getClass().getName());
+	}
+	
+	public void componentResized(ComponentEvent e)
+	{
+		//System.out.println("3: "+ e.getComponent().getClass().getName());
+	}
+	
+	public void componentShown(ComponentEvent e)
+	{
+		System.out.println("4: "+ e.getID());
+	}
+	
+
+}

Added: trunk/src/dl-learner/org/dllearner/tools/protege/ButtonList.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/ButtonList.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/ButtonList.java	2008-03-31 14:04:17 UTC (rev 739)
@@ -0,0 +1,25 @@
+package org.dllearner.tools.protege;
+
+import org.protege.editor.owl.ui.frame.AbstractOWLFrame;
+import org.protege.editor.owl.ui.frame.InheritedAnonymousClassesFrameSection;
+import org.protege.editor.owl.ui.frame.OWLClassAssertionAxiomIndividualSection;
+import org.protege.editor.owl.ui.frame.OWLDisjointClassesAxiomFrameSection;
+import org.protege.editor.owl.ui.frame.OWLEquivalentClassesAxiomFrameSection;
+import org.protege.editor.owl.ui.frame.OWLSubClassAxiomFrameSection;
+import org.semanticweb.owl.model.OWLClass;
+import org.protege.editor.owl.OWLEditorKit;
+
+public class ButtonList extends AbstractOWLFrame<OWLClass>{
+
+	public ButtonList(OWLEditorKit editorKit)
+	{
+		super(editorKit.getOWLModelManager().getOWLOntologyManager());
+        addSection(new OWLEquivalentClassesAxiomFrameSection(editorKit, this));
+        addSection(new SuggestClassButton(editorKit, this));
+        addSection(new OWLSubClassAxiomFrameSection(editorKit, this));
+        //addSection(new SuggestClassButton(editorKit, this));
+        addSection(new InheritedAnonymousClassesFrameSection(editorKit, this));
+        addSection(new OWLClassAssertionAxiomIndividualSection(editorKit, this));
+        addSection(new OWLDisjointClassesAxiomFrameSection(editorKit, this));
+	}
+}

Added: trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerComponentListener.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerComponentListener.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerComponentListener.java	2008-03-31 14:04:17 UTC (rev 739)
@@ -0,0 +1,16 @@
+package org.dllearner.tools.protege;
+
+import java.awt.event.*;
+
+public class DLLearnerComponentListener implements ItemListener {
+
+	 public void itemStateChanged(ItemEvent e) {
+	        if (e.getStateChange() == ItemEvent.SELECTED) {
+	            
+	        	System.out.println("JUHU "+e.getStateChange());
+
+	        } else {
+	        
+	        }
+	    }
+}

Added: trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerConfig.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerConfig.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerConfig.java	2008-03-31 14:04:17 UTC (rev 739)
@@ -0,0 +1,54 @@
+package org.dllearner.tools.protege;
+
+import org.protege.editor.owl.OWLEditorKit;
+
+public class DLLearnerConfig {
+
+	
+	
+	public void DLLearnerStart()
+	{
+		System.out.println("blub");
+		/*ComponentManager cm = ComponentManager.getInstance();
+		KnowledgeSource source = cm.knowledgeSource(OWLFile.class);
+		String example = "examples/family/father.owl";
+		cm.applyConfigEntry(source, "url", new File(example).toURI().toString());
+		source.init();
+		
+		// create DIG reasoning service with standard settings
+		ReasonerComponent reasoner = cm.reasoner(DIGReasoner.class, source);
+		// ReasoningService rs = cm.reasoningService(DIGReasonerNew.class, source);
+		reasoner.init();
+		ReasoningService rs = cm.reasoningService(reasoner);
+		
+		// create a learning problem and set positive and negative examples
+		LearningProblem lp = cm.learningProblem(PosNegDefinitionLP.class, rs);
+		Set<String> positiveExamples = new TreeSet<String>();
+		positiveExamples.add("http://example.com/father#stefan");
+		positiveExamples.add("http://example.com/father#markus");
+		positiveExamples.add("http://example.com/father#martin");
+		Set<String> negativeExamples = new TreeSet<String>();
+		negativeExamples.add("http://example.com/father#heinz");
+		negativeExamples.add("http://example.com/father#anna");
+		negativeExamples.add("http://example.com/father#michelle");
+		cm.applyConfigEntry(lp, "positiveExamples", positiveExamples);
+		cm.applyConfigEntry(lp, "negativeExamples", negativeExamples);
+		lp.init();
+		
+		// create the learning algorithm
+		LearningAlgorithm la = null;
+		try {
+			la = cm.learningAlgorithm(RandomGuesser.class, lp, rs);
+		} catch (LearningProblemUnsupportedException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		}
+		cm.applyConfigEntry(la, "numberOfTrees", 100);
+		cm.applyConfigEntry(la, "maxDepth", 5);
+		la.init();
+		
+		// start the algorithm and print the best concept found
+		la.start();
+		System.out.println(la.getBestSolution());*/
+	}
+}

Added: trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerOptionTab.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerOptionTab.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/DLLearnerOptionTab.java	2008-03-31 14:04:17 UTC (rev 739)
@@ -0,0 +1,175 @@
+package org.dllearner.tools.protege;
+
+import org.protege.editor.owl.OWLEditorKit;
+
+import org.semanticweb.owl.model.OWLClass;
+import org.semanticweb.owl.model.OWLDescription;
+import org.semanticweb.owl.model.OWLException;
+import org.protege.editor.owl.ui.frame.*;
+import org.protege.editor.owl.ui.framelist.OWLFrameList2;
+
+import javax.swing.*;
+import javax.swing.event.ChangeEvent;
+import javax.swing.event.ChangeListener;
+import javax.swing.event.DocumentEvent;
+import javax.swing.event.DocumentListener;
+
+import java.awt.*;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.io.File;
+import java.util.*;
+
+import org.dllearner.algorithms.RandomGuesser;
+import org.dllearner.core.ComponentInitException;
+import org.dllearner.algorithms.refexamples.ExampleBasedROLearner;
+import org.dllearner.core.ComponentManager;
+import org.dllearner.reasoning.DIGReasoner;
+import org.dllearner.algorithms.RandomGuesser;
+import org.dllearner.core.ComponentInitException;
+import org.dllearner.core.ComponentManager;
+import org.dllearner.core.KnowledgeSource;
+import org.dllearner.core.LearningAlgorithm;
+import org.dllearner.core.LearningProblem;
+import org.dllearner.core.LearningProblemUnsupportedException;
+import org.dllearner.core.ReasonerComponent;
+import org.dllearner.core.ReasoningService;
+import org.dllearner.kb.OWLFile;
+import org.dllearner.learningproblems.PosNegDefinitionLP;
+import org.dllearner.reasoning.DIGReasoner;
+import org.dllearner.learningproblems.PosNegDefinitionLP;
+import org.dllearner.core.KnowledgeSource;
+import org.dllearner.kb.OWLFile;
+import org.semanticweb.owl.model.*;
+
+
+
+public class DLLearnerOptionTab extends AbstractOWLFrameSectionRowObjectEditor<OWLDescription> 
+         {
+	
+  private JLabel pos;
+  private JComponent learner;
+  private JSplitPane split;
+  private JButton accept;
+  private JButton config;
+  private OWLEditorKit editor;
+  private JPanel option;
+  private JScrollPane suggest;
+  private JPanel vorschlag;
+  private Object[] blub;
+  private OWLDescription initialDescription;
+  private JLabel neg;
+  private String test;
+  private ActionHandler action;
+  private DLLearnerComponentListener listen;
+  private DLLearnerConfig dlLearnerConfig;
+  private JCheckBox hi;
+  
+
+  	//TODO: Layout selber festlegen denn die standartlayouts sind scheisse
+  	//TODO: ActionListener implementieren
+  	//TODO: Reasoner, learningproblems und algos direkt vom dl-learner beziehen
+  	//TODO: instanz vom DLLearnerOptionTab wieder zuruecksetzen damit beim laden neue Ontologie erkannt wird 
+    public DLLearnerOptionTab(OWLEditorKit editorKit, OWLDescription description) {
+     
+    	dlLearnerConfig = new DLLearnerConfig();
+    	editor = editorKit;
+        initialDescription = description;
+        split = new JSplitPane(split.HORIZONTAL_SPLIT,false);
+    	suggest = new JScrollPane();
+    	vorschlag = new JPanel(new GridLayout(3,1));
+    	learner = new JPanel();
+    	option = new JPanel(new GridLayout(20,1));
+    	init();
+    	hi= new JCheckBox("Test", true);
+    	//buildLearnerOption();
+  }
+    
+    public void startDLLearner()
+    {
+    	new DLLearnerConfig().DLLearnerStart();
+
+    	
+    }
+    public void init()
+    {
+    	action = new ActionHandler(this.action);
+    	listen = new DLLearnerComponentListener();
+    }
+    
+    public OWLDescription getEditedObject()
+    {
+    	String expression = "JUHU";
+    	try {
+    	return editor.getOWLModelManager().getOWLDescriptionParser().createOWLDescription(expression);
+    	}
+    	catch (OWLException e){
+    		return null;
+    	}
+    	
+    }
+  
+    private void buildLearnerOption()
+    {
+    	learner.setPreferredSize(new Dimension(500, 400));
+    	split = new JSplitPane(split.HORIZONTAL_SPLIT,false);
+    	split.setResizeWeight(0.5);
+    	
+    	pos = new JLabel("Positive Examples");
+    	option.add(pos);
+    	blub=editor.getOWLModelManager().getActiveOntology().getReferencedIndividuals().toArray();
+    	for(int j = 0; j<editor.getOWLModelManager().getActiveOntology().getReferencedIndividuals().size();j++)
+    	{
+    		option.add(new JCheckBox(editor.getOWLModelManager().getActiveOntology().getURI().toString()+"#"+blub[j], true)).addComponentListener(action);
+    	}
+    	neg = new JLabel("Negative Examples");
+    	option.add(neg);
+    	for(int j = 0; j<editor.getOWLModelManager().getActiveOntology().getReferencedIndividuals().size();j++)
+    	{
+    		option.add(new JCheckBox(editor.getOWLModelManager().getActiveOntology().getURI().toString()+"#"+blub[j], true)).addComponentListener(action);
+    	}
+    	config = new JButton("Config");
+    	config.addActionListener(this.action);
+    	option.add(config);
+    	option.add(hi);
+    	accept = new JButton("RUN");
+    	accept.addActionListener(this.action);
+    	vorschlag.add(suggest);
+    	vorschlag.add(accept);
+    	split.setLeftComponent(option);
+        split.setRightComponent(vorschlag);
+    	learner.add(split);
+    	System.out.println("");
+    	//System.out.println("hi: "+hi.get);
+    	startDLLearner();
+    	
+    }
+    
+public void actionPerformed(ActionEvent a)
+{
+	System.out.println(a.getSource());
+}
+    public JComponent getEditorComponent()
+    {
+    	buildLearnerOption();
+    	return learner;
+    }
+   
+   public void clear()
+   {
+	   if(split!=null)
+	   {
+	   split.removeAll();
+	   option.removeAll();
+	   vorschlag.removeAll();
+	   }
+   }
+   
+   public void dispose(){
+   }
+   
+   public Set<OWLDescription> getEditedObjects()
+   {
+	   return super.getEditedObjects();
+   }
+    }
\ No newline at end of file

Added: trunk/src/dl-learner/org/dllearner/tools/protege/META-INF/MANIFEST.MF
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/META-INF/MANIFEST.MF	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/META-INF/MANIFEST.MF	2008-03-31 14:04:17 UTC (rev 739)
@@ -0,0 +1,14 @@
+Manifest-Version: 1.0
+Bundle-ManifestVersion: 2
+Bundle-Name: Hallo Welt
+Bundle-SymbolicName: org.dllearner.tools.protege;singleton:=true
+Bundle-Category: protege
+Bundle-Description: blablabla
+Bundle-Vendor: blablabla
+Bundle-DocURL: blablabla
+Bundle-ClassPath: .,lib/xbean.jar,lib/dig1.1-xmlbeans.jar,lib/junit-4.4.jar,log4j.jar,lib/components.ini
+Import-Package: org.osgi.framework,org.apache.log4j
+Export-Package: lib
+Bundle-Version: 1.0.0
+Bundle-Activator: org.protege.editor.core.plugin.DefaultPluginActivator
+Require-Bundle: org.eclipse.equinox.registry,org.eclipse.equinox.common,org.protege.editor.core.application,org.protege.editor.owl,org.semanticweb.owl.owlapi

Added: trunk/src/dl-learner/org/dllearner/tools/protege/META-INF/plugin.xml
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/META-INF/plugin.xml	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/META-INF/plugin.xml	2008-03-31 14:04:17 UTC (rev 739)
@@ -0,0 +1,10 @@
+<?xml version="1.0" ?>
+  <plugin>
+  	<extension id="org.dllearner.tools.protege.ProtegePlugin"
+			point="org.protege.editor.core.application.ViewComponent">
+  		<label value="Hallo Welt"/>
+  		<class value="org.dllearner.tools.protege.ProtegePlugin"/>
+  		<headerColor value="@org.protege.classcolor"/>
+  		<category value="@org.protege.classcategory"/>
+  	</extension>
+  </plugin>
\ No newline at end of file

Added: trunk/src/dl-learner/org/dllearner/tools/protege/ProtegePlugin.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/ProtegePlugin.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/ProtegePlugin.java	2008-03-31 14:04:17 UTC (rev 739)
@@ -0,0 +1,34 @@
+package org.dllearner.tools.protege;
+
+import org.protege.editor.owl.ui.view.AbstractOWLClassViewComponent;
+import org.semanticweb.owl.model.OWLClass;
+import org.protege.editor.owl.ui.framelist.OWLFrameList2;
+import javax.swing.*;
+import java.awt.*;
+
+
+public class ProtegePlugin  extends AbstractOWLClassViewComponent
+{
+
+private OWLFrameList2<OWLClass> list;
+ 
+	public void initialiseClassView() throws Exception {
+		list = new OWLFrameList2<OWLClass>(getOWLEditorKit(), new ButtonList(getOWLEditorKit()));
+		setLayout(new BorderLayout());
+		JScrollPane hallo = new JScrollPane(list);
+		add(hallo);
+		
+		
+	}
+	
+	
+	protected OWLClass updateView(OWLClass selectedClass) {
+        list.setRootObject(selectedClass);
+        return selectedClass;
+    }
+
+
+    public void disposeView() {
+        list.dispose();
+    }
+}  
\ No newline at end of file

Added: trunk/src/dl-learner/org/dllearner/tools/protege/SuggestClassButton.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/protege/SuggestClassButton.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/protege/SuggestClassButton.java	2008-03-31 14:04:17 UTC (rev 739)
@@ -0,0 +1,64 @@
+package org.dllearner.tools.protege;
+
+import java.util.Comparator;
+
+import org.protege.editor.owl.OWLEditorKit;
+import org.protege.editor.owl.ui.frame.AbstractOWLFrameSection;
+import org.protege.editor.owl.ui.frame.OWLFrame;
+import org.protege.editor.owl.ui.frame.OWLFrameSectionRow;
+import org.protege.editor.owl.ui.frame.OWLFrameSectionRowObjectEditor;
+import org.semanticweb.owl.model.OWLClass;
+import org.semanticweb.owl.model.OWLDescription;
+import org.semanticweb.owl.model.OWLEquivalentClassesAxiom;
+import org.semanticweb.owl.model.OWLOntology;
+import org.semanticweb.owl.util.CollectionFactory;
+
+
+public class SuggestClassButton extends AbstractOWLFrameSection<OWLClass, OWLEquivalentClassesAxiom, OWLDescription> {
+	
+	private static final String LABEL = "Suggest a class";
+
+	
+	public SuggestClassButton(OWLEditorKit editorKit, OWLFrame<OWLClass> frame)
+	{
+		super(editorKit, LABEL, frame);
+	}
+	
+    protected void clear() {
+    	
+    }
+
+
+
+    protected void refill(OWLOntology ontology) {
+
+    }
+
+
+    protected void refillInferred() {
+
+    }
+
+
+    public void visit(SuggestClassButton axiom) {
+
+
+    }
+
+
+    protected OWLEquivalentClassesAxiom createAxiom(OWLDescription object) {
+        return getOWLDataFactory().getOWLEquivalentClassesAxiom(CollectionFactory.createSet(getRootObject(), object));
+    }
+
+
+    public OWLFrameSectionRowObjectEditor<OWLDescription> getObjectEditor() {
+   
+        return new DLLearnerOptionTab(getOWLEditorKit(), null);
+
+    }
+
+
+    public Comparator<OWLFrameSectionRow<OWLClass, OWLEquivalentClassesAxiom, OWLDescription>> getRowComparator() {
+        return null;
+    }
+}


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[DL-Learner SVN] SF.net SVN: dl-learner: [738] trunk/src/dl-learner/org/dllearner/tools/ore

From: <lor...@us...> - 2008-03-30 11:19:05

Revision: 738
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=738&view=rev
Author:   lorenz_b
Date:     2008-03-30 04:19:02 -0700 (Sun, 30 Mar 2008)

Log Message:
-----------


Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java	2008-03-29 21:05:25 UTC (rev 737)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java	2008-03-30 11:19:02 UTC (rev 738)
@@ -15,7 +15,7 @@
 
 
 
-	private javax.swing.JList conceptList;
+	private javax.swing.JList resultList;
 	
 	private JPanel contentPanel;
 	
@@ -51,9 +51,9 @@
 		JScrollPane scroll = new JScrollPane();
 		
 			
-		conceptList = new JList(model);
+		resultList = new JList(model);
 		scroll.setPreferredSize(new Dimension(300, 300));
-		scroll.setViewportView(conceptList);
+		scroll.setViewportView(resultList);
 				
 		contentPanel1.add(scroll);
 		
@@ -85,6 +85,10 @@
 	public DefaultListModel getModel() {
 		return model;
 	}
+
+	public javax.swing.JList getResultList() {
+		return resultList;
+	}
 	
 	
 	

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java	2008-03-29 21:05:25 UTC (rev 737)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java	2008-03-30 11:19:02 UTC (rev 738)
@@ -7,6 +7,7 @@
 import java.util.TimerTask;
 import java.util.concurrent.ExecutionException;
 
+import javax.swing.SwingUtilities;
 import javax.swing.SwingWorker;
 
 import org.dllearner.core.LearningAlgorithm;
@@ -42,10 +43,7 @@
         return ConceptPanelDescriptor.IDENTIFIER;
     }
     
- 
-    public void displayingPanel(){
-    	
-    }
+   
     
     class ResultSwingWorker extends
 			SwingWorker<List<Description>, List<Description>> {
@@ -76,29 +74,42 @@
 			try {
 				result = get();
 			} catch (InterruptedException e) {
-
 				e.printStackTrace();
 			} catch (ExecutionException e) {
-
 				e.printStackTrace();
 			}
 			panel4.getStartButton().setEnabled(true);
 			panel4.getStopButton().setEnabled(false);
+			updateList(result);
 
-			for (Description d : result)
-				panel4.getModel().addElement(d);
-
 		}
 
 		@Override
 		protected void process(List<List<Description>> resultLists) {
 			panel4.getModel().clear();
 			for (List<Description> list : resultLists) {
-				for (Description d : list)
-					panel4.getModel().addElement(d);
+				for( Description d : list)
+					System.out.println(d);
+				updateList(list);
 			}
 		}
+		
+		void updateList(final List<Description> result) {
+			Runnable doUpdateList = new Runnable() {
 
+				@Override
+				public void run() {
+					panel4.getModel().clear();
+					for (Description d : result) {
+						panel4.getModel().addElement(d);
+					}
+
+				}
+			};
+			SwingUtilities.invokeLater(doUpdateList);
+
+		}
+
 		public LearningAlgorithm getLa() {
 			return la;
 		}


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[DL-Learner SVN] SF.net SVN: dl-learner: [737] trunk/src/dl-learner/org/dllearner/tools/ore

From: <lor...@us...> - 2008-03-29 21:05:35

Revision: 737
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=737&view=rev
Author:   lorenz_b
Date:     2008-03-29 14:05:25 -0700 (Sat, 29 Mar 2008)

Log Message:
-----------


Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java
    trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java	2008-03-29 20:37:54 UTC (rev 736)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java	2008-03-29 21:05:25 UTC (rev 737)
@@ -1,6 +1,7 @@
 package org.dllearner.tools.ore;
 
 import java.awt.BorderLayout;
+import java.awt.Dimension;
 import java.awt.event.ActionListener;
 
 import javax.swing.DefaultListModel;
@@ -51,7 +52,7 @@
 		
 			
 		conceptList = new JList(model);
-		scroll.setSize(100,100);
+		scroll.setPreferredSize(new Dimension(300, 300));
 		scroll.setViewportView(conceptList);
 				
 		contentPanel1.add(scroll);
@@ -80,6 +81,10 @@
 	public JButton getStopButton() {
 		return stopButton;
 	}
+
+	public DefaultListModel getModel() {
+		return model;
+	}
 	
 	
 	

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java	2008-03-29 20:37:54 UTC (rev 736)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java	2008-03-29 21:05:25 UTC (rev 737)
@@ -2,12 +2,14 @@
 
 import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
+import java.util.List;
 import java.util.Timer;
 import java.util.TimerTask;
 import java.util.concurrent.ExecutionException;
 
 import javax.swing.SwingWorker;
 
+import org.dllearner.core.LearningAlgorithm;
 import org.dllearner.core.owl.Description;
 
 
@@ -45,50 +47,64 @@
     	
     }
     
-    class ResultSwingWorker extends SwingWorker<Description, Description>
-    {
-      @Override 
-      public Description doInBackground() {
-			
-			getWizardModel().getOre().start();
+    class ResultSwingWorker extends
+			SwingWorker<List<Description>, List<Description>> {
+		LearningAlgorithm la;
+
+		@Override
+		public List<Description> doInBackground() {
+
+			la = getWizardModel().getOre().start();
 			timer = new Timer();
-			timer.schedule(new TimerTask(){
+			timer.schedule(new TimerTask() {
 
 				public void run() {
-					System.err.println(getWizardModel().getOre()
-							.getLearningResults(3));
+					publish(getWizardModel().getOre().getLearningResults(5));
 				}
-				
+
 			}, 0, 1000);
-      
-			
-			Description result = getWizardModel().getOre().getLearningResult();
 
+			List<Description> result = getWizardModel().getOre()
+					.getLearningResults(5);
+
 			return result;
 		}
-      
-      public void done() {
-    	  timer.cancel();
-    	  Description result = null;
+
+		public void done() {
+			timer.cancel();
+			List<Description> result = null;
 			try {
 				result = get();
 			} catch (InterruptedException e) {
-			
+
 				e.printStackTrace();
 			} catch (ExecutionException e) {
-			
+
 				e.printStackTrace();
 			}
 			panel4.getStartButton().setEnabled(true);
 			panel4.getStopButton().setEnabled(false);
 
-			panel4.setResult(result.toString());
+			for (Description d : result)
+				panel4.getModel().addElement(d);
+
 		}
-      
-      
-      
-    }
 
+		@Override
+		protected void process(List<List<Description>> resultLists) {
+			panel4.getModel().clear();
+			for (List<Description> list : resultLists) {
+				for (Description d : list)
+					panel4.getModel().addElement(d);
+			}
+		}
+
+		public LearningAlgorithm getLa() {
+			return la;
+		}
+
+	}
+
 	
 	public void actionPerformed(ActionEvent event) {
 		if(event.getActionCommand().equals("Start")){
@@ -99,7 +115,7 @@
 		}
 		else{
 			panel4.getStopButton().setEnabled(false);
-            worker.cancel(true);
+            worker.getLa().stop();
         	panel4.getStartButton().setEnabled(true);
 		}
 		

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java	2008-03-29 20:37:54 UTC (rev 736)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java	2008-03-29 21:05:25 UTC (rev 737)
@@ -126,20 +126,14 @@
 	}
 
 	
-	public void startLearningThread(){
-		
-		
-				la.start();
-				
-	
-	}
-
-	public void start(){
+	public LearningAlgorithm start(){
 		this.setPosNegExamples();
 		this.setLearningProblem();
 		this.setLearningAlgorithm();
 		la.start();
-		this.startLearningThread();
+		
+		return la;
+		
 	}
 	
 	public Description getLearningResult(){
@@ -171,7 +165,7 @@
 		System.out.println(test.negExamples);
 		test.setLearningProblem();
 		test.setLearningAlgorithm();
-		test.startLearningThread();
+		test.start();
 	}
 	
 	


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[DL-Learner SVN] SF.net SVN: dl-learner: [736] trunk/src/dl-learner/org/dllearner/tools/ore

From: <lor...@us...> - 2008-03-29 20:37:57

Revision: 736
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=736&view=rev
Author:   lorenz_b
Date:     2008-03-29 13:37:54 -0700 (Sat, 29 Mar 2008)

Log Message:
-----------


Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java
    trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
    trunk/src/dl-learner/org/dllearner/tools/ore/WizardController.java

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java	2008-03-29 17:13:15 UTC (rev 735)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java	2008-03-29 20:37:54 UTC (rev 736)
@@ -65,9 +65,8 @@
 		
 			
 		conceptList = new JList(model);
-		scroll.setSize(100,100);
+		scroll.setPreferredSize(new Dimension(200,200));
 		scroll.setViewportView(conceptList);
-				
 		contentPanel1.add(scroll);
 		
 		

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java	2008-03-29 17:13:15 UTC (rev 735)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java	2008-03-29 20:37:54 UTC (rev 736)
@@ -20,17 +20,26 @@
 	
 	private DefaultListModel model;
 	private JLabel result;
-	private JButton run;
+	private JButton startButton;
+	private JButton stopButton;
 	
 	public LearningPanel() {
 		
 		super();
 		model = new DefaultListModel();
 		result = new JLabel();
-		run = new JButton("Run");
+		JPanel buttonPanel = new JPanel();
+		startButton = new JButton("Start");
+		
+		stopButton = new JButton("Stop");
+		stopButton.setEnabled(false);
+		
+		buttonPanel.add(startButton);
+		buttonPanel.add(stopButton);
 		contentPanel = getContentPanel();
 		setLayout(new java.awt.BorderLayout());
-		add(run,BorderLayout.EAST);
+		
+		add(buttonPanel, BorderLayout.EAST);
 		add(contentPanel,BorderLayout.CENTER);
 		add(result, BorderLayout.SOUTH);
 	}
@@ -52,13 +61,25 @@
 		return contentPanel1;
 	}
 	
-	public void addButtonListener(ActionListener a){
-		run.addActionListener(a);
+	public void addStartButtonListener(ActionListener a){
+		startButton.addActionListener(a);
 	}
 	
+	public void addStopButtonListener(ActionListener a){
+		stopButton.addActionListener(a);
+	}
+	
 	public void setResult(String resultStr){
 		result.setText(resultStr);
 	}
+
+	public JButton getStartButton() {
+		return startButton;
+	}
+
+	public JButton getStopButton() {
+		return stopButton;
+	}
 	
 	
 	

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java	2008-03-29 17:13:15 UTC (rev 735)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java	2008-03-29 20:37:54 UTC (rev 736)
@@ -2,6 +2,8 @@
 
 import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
+import java.util.Timer;
+import java.util.TimerTask;
 import java.util.concurrent.ExecutionException;
 
 import javax.swing.SwingWorker;
@@ -16,12 +18,15 @@
     public static final String IDENTIFIER = "LEARNING_PANEL";
     
     LearningPanel panel4;
+    ResultSwingWorker worker;
+    Timer timer;
     
     public LearningPanelDescriptor() {
         
         panel4 = new LearningPanel();
-        panel4.addButtonListener(this);
-             
+        panel4.addStartButtonListener(this);
+        panel4.addStopButtonListener(this);
+        
         setPanelDescriptorIdentifier(IDENTIFIER);
         setPanelComponent(panel4);
      
@@ -40,43 +45,64 @@
     	
     }
     
-    class Result extends SwingWorker<Description, Void>
+    class ResultSwingWorker extends SwingWorker<Description, Description>
     {
       @Override 
-      public Description doInBackground()
-      {		
-    	  getWizardModel().getOre().start();
-    	  Description result = getWizardModel().getOre().getLearningResult();
-    	
-      	      	      
-      	return result;
-      }
+      public Description doInBackground() {
+			
+			getWizardModel().getOre().start();
+			timer = new Timer();
+			timer.schedule(new TimerTask(){
+
+				public void run() {
+					System.err.println(getWizardModel().getOre()
+							.getLearningResults(3));
+				}
+				
+			}, 0, 1000);
       
-      public void done(){
-    	  Description result=null;
-		try {
-			result = get();
-		} catch (InterruptedException e) {
-			// TODO Auto-generated catch block
-			e.printStackTrace();
-		} catch (ExecutionException e) {
-			// TODO Auto-generated catch block
-			e.printStackTrace();
+			
+			Description result = getWizardModel().getOre().getLearningResult();
+
+			return result;
 		}
-    	  panel4.setResult(result.toString());
-      }
       
+      public void done() {
+    	  timer.cancel();
+    	  Description result = null;
+			try {
+				result = get();
+			} catch (InterruptedException e) {
+			
+				e.printStackTrace();
+			} catch (ExecutionException e) {
+			
+				e.printStackTrace();
+			}
+			panel4.getStartButton().setEnabled(true);
+			panel4.getStopButton().setEnabled(false);
+
+			panel4.setResult(result.toString());
+		}
       
       
+      
     }
 
 	
-    
-    
-
-
-	@Override
-	public void actionPerformed(ActionEvent arg0) {
-		new Result().execute();
+	public void actionPerformed(ActionEvent event) {
+		if(event.getActionCommand().equals("Start")){
+			panel4.getStartButton().setEnabled(false);
+            panel4.getStopButton().setEnabled(true);
+            worker = new ResultSwingWorker();
+            worker.execute();
+		}
+		else{
+			panel4.getStopButton().setEnabled(false);
+            worker.cancel(true);
+        	panel4.getStartButton().setEnabled(true);
+		}
 		
+		
+		
 	}}

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java	2008-03-29 17:13:15 UTC (rev 735)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java	2008-03-29 20:37:54 UTC (rev 736)
@@ -20,6 +20,8 @@
 import org.dllearner.learningproblems.PosNegDefinitionLP;
 import org.dllearner.reasoning.OWLAPIReasoner;
 
+import java.util.List;
+
 public class ORE {
 	
 	private LearningAlgorithm la;
@@ -125,15 +127,11 @@
 
 	
 	public void startLearningThread(){
-		Thread laThread = new Thread()
-		{
-			@Override
-			public void run(){
+		
+		
 				la.start();
 				
-			}
-		};
-		laThread.start();
+	
 	}
 
 	public void start(){
@@ -147,6 +145,10 @@
 	public Description getLearningResult(){
 		return la.getBestSolution();
 	}
+	
+	public List<Description> getLearningResults(int anzahl){
+		return la.getBestSolutions(anzahl);
+	}
 
 		
 	public static void main(String[] args){

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/WizardController.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/WizardController.java	2008-03-29 17:13:15 UTC (rev 735)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/WizardController.java	2008-03-29 20:37:54 UTC (rev 736)
@@ -66,7 +66,7 @@
         
         //TODO nochmal \xFCberdenken
         if(nextPanelDescriptor.equals("CONCEPT_CHOOSE_PANEL")){
-        	//((ConceptPanelDescriptor)wizard.getModel().getPanelHashMap().get(nextPanelDescriptor)).panel3.getModel().clear();
+        	((ConceptPanelDescriptor)wizard.getModel().getPanelHashMap().get(nextPanelDescriptor)).panel3.getModel().clear();
         	new ConceptRetriever(nextPanelDescriptor).execute();
         }
         


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[DL-Learner SVN] SF.net SVN: dl-learner: [735] trunk/lib

From: <lor...@us...> - 2008-03-29 17:13:31

Revision: 735
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=735&view=rev
Author:   lorenz_b
Date:     2008-03-29 10:13:15 -0700 (Sat, 29 Mar 2008)

Log Message:
-----------
needed for ORE-Wizard

Added Paths:
-----------
    trunk/lib/ore-tool/
    trunk/lib/ore-tool/swingx-0.9.2.jar

Added: trunk/lib/ore-tool/swingx-0.9.2.jar
===================================================================
(Binary files differ)


Property changes on: trunk/lib/ore-tool/swingx-0.9.2.jar
___________________________________________________________________
Name: svn:mime-type
   + application/octet-stream


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[DL-Learner SVN] SF.net SVN: dl-learner: [734] trunk/src/dl-learner/org/dllearner/tools/ore

From: <lor...@us...> - 2008-03-29 17:12:11

Revision: 734
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=734&view=rev
Author:   lorenz_b
Date:     2008-03-29 10:11:56 -0700 (Sat, 29 Mar 2008)

Log Message:
-----------


Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java
    trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
    trunk/src/dl-learner/org/dllearner/tools/ore/Wizard.java
    trunk/src/dl-learner/org/dllearner/tools/ore/WizardController.java
    trunk/src/dl-learner/org/dllearner/tools/ore/WizardModel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/WizardPanelNotFoundException.java

Removed Paths:
-------------
    trunk/src/dl-learner/org/dllearner/tools/ore/ORE_alt.java

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java	2008-03-28 20:22:07 UTC (rev 733)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java	2008-03-29 17:11:56 UTC (rev 734)
@@ -1,7 +1,9 @@
 package org.dllearner.tools.ore;
 
 import java.awt.BorderLayout;
-import java.awt.Color;
+import java.awt.Dimension;
+import java.awt.geom.Ellipse2D;
+import java.awt.geom.RoundRectangle2D;
 
 import javax.swing.DefaultListModel;
 import javax.swing.JLabel;
@@ -10,6 +12,11 @@
 import javax.swing.JScrollPane;
 import javax.swing.event.ListSelectionListener;
 
+import org.jdesktop.swingx.JXBusyLabel;
+import org.jdesktop.swingx.icon.EmptyIcon;
+import org.jdesktop.swingx.painter.BusyPainter;
+
+
 public class ConceptPanel extends JPanel{
 
 
@@ -19,18 +26,36 @@
 	private JPanel contentPanel;
 	
 	private DefaultListModel model;
-	private BlinkLabel blink;	
+	private JXBusyLabel loadingLabel;	
+	private JLabel statusLabel;
 	
 	public ConceptPanel() {
 		
 		super();
+		
 		model = new DefaultListModel();
-		blink = new BlinkLabel();
-		blink.setText("Loading Concepts");
+		loadingLabel = new JXBusyLabel(new Dimension(24,24));
+		statusLabel = new JLabel();
+		
+		BusyPainter<?> painter = new BusyPainter(
+		new RoundRectangle2D.Float(0, 0,10.0f,3.2f,10.0f,10.0f),
+		new Ellipse2D.Float(3.5f,3.5f,17.0f,17.0f));
+		painter.setTrailLength(4);
+		painter.setPoints(8);
+		painter.setFrame(-1);
+		loadingLabel.setPreferredSize(new Dimension(24,24));
+		loadingLabel.setIcon(new EmptyIcon(24,24));
+		loadingLabel.setBusyPainter(painter);
+
+		
+		JPanel labelPanel = new JPanel();
+		labelPanel.add(statusLabel);
+		labelPanel.add(loadingLabel);
+		
 		contentPanel = getContentPanel();
 		setLayout(new java.awt.BorderLayout());
 		add(contentPanel,BorderLayout.CENTER);
-		add(blink, BorderLayout.SOUTH);
+		add(labelPanel, BorderLayout.SOUTH);
 	}
 
 	private JPanel getContentPanel() {
@@ -66,33 +91,44 @@
     	return conceptList;
     }
     
-    public BlinkLabel getBlinkLabel(){
-    	return blink;
-    }
+   
+	public JLabel getStatusLabel() {
+		return statusLabel;
+	}
+
+	public JXBusyLabel getLoadingLabel() {
+		return loadingLabel;
+	}
     
-    class BlinkLabel extends JLabel implements Runnable{
-    	private boolean blinking = false;
-    	
-    	public void start(){
-    		blinking = true;
-    		new Thread(this).start();
-    	}
-    	public void stop(){
-    		blinking = false;
-    		setText("Done! Select Concept and press 'Next'");
-    	}
-    	public void run(){
-    		while(blinking){
-    			setForeground(Color.red);
-    			try {
-					Thread.sleep(100);
-				} catch (InterruptedException e) {
-					return;
-				}
-				setForeground(Color.black);
-    		}
-    	}
-    }
+//    class BlinkLabel extends JLabel implements Runnable{
+//    	private boolean blinking = false;
+//    	    	
+//    	public void start(){
+//    		blinking = true;
+//    		new Thread(this).start();
+//    	}
+//    	public void stop(){
+//    		blinking = false;
+//    		setForeground(Color.black);
+//    		
+//    	}
+//    	public void run(){
+//    		while(blinking){
+//    			setText("Loading Concept");
+//    			
+//    			//setForeground(Color.red);
+//    			try {
+//					Thread.sleep(300);
+//				} catch (InterruptedException e) {
+//					return;
+//				}
+//				setText("");
+//				
+//    		}
+//    		if(!blinking)
+//    			setText("Done! Select Concept and press 'Next'");
+//    	}
+//    }
  
 
 

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java	2008-03-28 20:22:07 UTC (rev 733)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java	2008-03-29 17:11:56 UTC (rev 734)
@@ -3,9 +3,11 @@
 import javax.swing.event.ListSelectionEvent;
 import javax.swing.event.ListSelectionListener;
 
+import org.dllearner.core.owl.NamedClass;
 
 
 
+
 public class ConceptPanelDescriptor extends WizardPanelDescriptor implements ListSelectionListener{
     
     public static final String IDENTIFIER = "CONCEPT_CHOOSE_PANEL";
@@ -39,7 +41,7 @@
 	public void valueChanged(ListSelectionEvent e) {
 		setNextButtonAccordingToConceptSelected(); 
 		if (!e.getValueIsAdjusting()) 
-			 getWizardModel().getOre().setConcept(panel3.getList().getSelectedValue().toString());
+			 getWizardModel().getOre().setConcept((NamedClass)panel3.getList().getSelectedValue());
 			
 	}
 	

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanel.java	2008-03-28 20:22:07 UTC (rev 733)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanel.java	2008-03-29 17:11:56 UTC (rev 734)
@@ -17,13 +17,11 @@
 	private javax.swing.JButton browseButton;
 	
 	private JPanel contentPanel;
-	private LeftPanel leftPanel;
 	private JLabel message;
 	
 	public KnowledgeSourcePanel() {
 
-//		super();
-		leftPanel = new LeftPanel(1);
+new LeftPanel(1);
 		contentPanel = getContentPanel();
 		
 		setLayout(new java.awt.BorderLayout());

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java	2008-03-28 20:22:07 UTC (rev 733)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java	2008-03-29 17:11:56 UTC (rev 734)
@@ -5,7 +5,6 @@
 import java.util.SortedSet;
 import java.util.TreeSet;
 
-import org.dllearner.algorithms.RandomGuesser;
 import org.dllearner.algorithms.refinement.ROLearner;
 import org.dllearner.core.ComponentInitException;
 import org.dllearner.core.ComponentManager;
@@ -16,11 +15,10 @@
 import org.dllearner.core.ReasoningService;
 import org.dllearner.core.owl.Description;
 import org.dllearner.core.owl.Individual;
+import org.dllearner.core.owl.NamedClass;
 import org.dllearner.kb.OWLFile;
 import org.dllearner.learningproblems.PosNegDefinitionLP;
-import org.dllearner.parser.KBParser;
-import org.dllearner.parser.ParseException;
-import org.dllearner.reasoning.DIGReasoner;
+import org.dllearner.reasoning.OWLAPIReasoner;
 
 public class ORE {
 	
@@ -31,34 +29,30 @@
 	private ComponentManager cm;
 	SortedSet<Individual> posExamples;
 	SortedSet<Individual> negExamples;
-	Description concept;
+	NamedClass concept;
 	
-	public ORE(){
-		
+	public ORE() {
+
 		cm = ComponentManager.getInstance();
-	
-		
+
 	}
 	
 	// step 1: detect knowledge sources
 	
-	public void setKnowledgeSource(File f){
-	
+	public void setKnowledgeSource(File f) {
+
 		Class<OWLFile> owl = OWLFile.class;
-		
-		
-			ks = cm.knowledgeSource(owl);
-		
-			cm.applyConfigEntry(ks, "url", f.toURI().toString());
-			
-			try {
-				ks.init();
-			} catch (ComponentInitException e) {
-				// TODO Auto-generated catch block
-				e.printStackTrace();
-			}
-		
-				
+		ks = cm.knowledgeSource(owl);
+
+		cm.applyConfigEntry(ks, "url", f.toURI().toString());
+
+		try {
+			ks.init();
+		} catch (ComponentInitException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		}
+
 	}
 	
 	
@@ -66,7 +60,7 @@
 	public void detectReasoner(){
 		
 		ReasonerComponent reasoner = cm.reasoner(
-				DIGReasoner.class, ks);
+				OWLAPIReasoner.class, ks);
 		
 		try {
 			reasoner.init();
@@ -97,7 +91,7 @@
 	}
 	
 	public void setLearningProblem(){
-		lp = new PosNegDefinitionLP(rs,posExamples, negExamples);
+		lp = new PosNegDefinitionLP(rs, posExamples, negExamples);
 		lp.init();
 	}
 	
@@ -111,8 +105,8 @@
 		//la = new ROLearner(lp, rs);
 		
 		Set<String> t = new TreeSet<String>();
-		t.add(concept.toString());
-		//cm.applyConfigEntry(la, "ignoredConcepts", t );
+		t.add(concept.getName());
+		cm.applyConfigEntry(la, "ignoredConcepts", t );
 		try {
 			la.init();
 		} catch (ComponentInitException e) {
@@ -121,13 +115,12 @@
 		}
 		
 	}
-	public void setConcept(String conceptStr){
-		try {
-			concept = KBParser.parseConcept(conceptStr);
-		} catch (ParseException e) {
-			// TODO Auto-generated catch block
-			e.printStackTrace();
-		}
+//	public void setConcept(String conceptStr){
+//		concept = new NamedClass(conceptStr);
+//	}
+	
+	public void setConcept(NamedClass concept){
+		this.concept = concept;
 	}
 
 	
@@ -170,7 +163,7 @@
 		
 		
 		
-		test.setConcept("http://example.com/father#father");
+		test.setConcept(new NamedClass("http://example.com/father#father"));
 		test.setPosNegExamples();
 		System.out.println(test.posExamples);
 		System.out.println(test.negExamples);

Deleted: trunk/src/dl-learner/org/dllearner/tools/ore/ORE_alt.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ORE_alt.java	2008-03-28 20:22:07 UTC (rev 733)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ORE_alt.java	2008-03-29 17:11:56 UTC (rev 734)
@@ -1,619 +0,0 @@
-/**
- * Copyright (C) 2007-2008, Jens Lehmann
- *
- * This file is part of DL-Learner.
- * 
- * DL-Learner is free software; you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation; either version 3 of the License, or
- * (at your option) any later version.
- *
- * DL-Learner is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
- *
- */
-package org.dllearner.tools.ore;
-
-import java.io.BufferedReader;
-import java.io.File;
-import java.io.IOException;
-import java.io.InputStreamReader;
-import java.net.MalformedURLException;
-import java.net.URL;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.SortedSet;
-import java.util.TreeSet;
-
-import org.apache.log4j.ConsoleAppender;
-import org.apache.log4j.Level;
-import org.apache.log4j.Logger;
-import org.apache.log4j.SimpleLayout;
-import org.dllearner.algorithms.BruteForceLearner;
-import org.dllearner.algorithms.RandomGuesser;
-import org.dllearner.algorithms.gp.GP;
-import org.dllearner.algorithms.refexamples.ExampleBasedROLComponent;
-import org.dllearner.algorithms.refinement.ROLearner;
-import org.dllearner.cli.ConfFileOption;
-import org.dllearner.core.Component;
-import org.dllearner.core.ComponentInitException;
-import org.dllearner.core.ComponentManager;
-import org.dllearner.core.KnowledgeSource;
-import org.dllearner.core.LearningAlgorithm;
-import org.dllearner.core.ReasonerComponent;
-import org.dllearner.core.ReasoningService;
-import org.dllearner.core.config.BooleanConfigOption;
-import org.dllearner.core.config.ConfigEntry;
-import org.dllearner.core.config.ConfigOption;
-import org.dllearner.core.config.DoubleConfigOption;
-import org.dllearner.core.config.IntegerConfigOption;
-import org.dllearner.core.config.InvalidConfigOptionValueException;
-import org.dllearner.core.config.StringConfigOption;
-import org.dllearner.core.config.StringSetConfigOption;
-import org.dllearner.core.config.StringTupleListConfigOption;
-import org.dllearner.core.owl.Description;
-import org.dllearner.core.owl.Individual;
-import org.dllearner.core.owl.NamedClass;
-import org.dllearner.kb.KBFile;
-import org.dllearner.kb.OWLFile;
-import org.dllearner.kb.sparql.SparqlKnowledgeSource;
-import org.dllearner.learningproblems.PosNegDefinitionLP;
-import org.dllearner.parser.ConfParser;
-import org.dllearner.parser.KBParser;
-import org.dllearner.parser.ParseException;
-import org.dllearner.parser.TokenMgrError;
-import org.dllearner.reasoning.DIGReasoner;
-import org.dllearner.reasoning.FastInstanceChecker;
-import org.dllearner.reasoning.FastRetrievalReasoner;
-import org.dllearner.reasoning.OWLAPIReasoner;
-import org.dllearner.utilities.ConceptComparator;
-import org.dllearner.utilities.Datastructures;
-import org.dllearner.utilities.Helper;
-import org.dllearner.utilities.StringTuple;
-
-/**
- * Start class for the ontology repair and enrichment tool.
- * 
- * @author Lorenz Buehmann.
- *
- */
-public class ORE_alt {
-
-	private static Logger logger = Logger.getRootLogger();
-
-	private static LearningAlgorithm la;
-	private ReasoningService rs;
-	private KnowledgeSource ks; 
-	
-	/**
-	 * Entry point for CLI interface.
-	 * 
-	 * @param args
-	 */
-	public static void main(String[] args) throws ComponentInitException {
-
-		File file = new File(args[args.length - 1]);
-
-		// create logger (a simple logger which outputs
-		// its messages to the console)
-		SimpleLayout layout = new SimpleLayout();
-		ConsoleAppender consoleAppender = new ConsoleAppender(layout);
-		logger.removeAllAppenders();
-		logger.addAppender(consoleAppender);
-		logger.setLevel(Level.DEBUG);
-
-		ORE_alt ore = null;
-		ore = new ORE_alt(file);
-		ore.start();
-	}
-
-	public ORE_alt(){
-		
-	}
-	
-	public void setKnowledgeSource(File file){
-		
-	}
-	
-	/**
-	 * Initialise all components based on conf file.
-	 * 
-	 * @param file
-	 *            Conf file to read.
-	 * @throws ComponentInitException
-	 */
-	public ORE_alt(File file) throws ComponentInitException {
-		String baseDir = file.getParentFile().getPath();
-
-		// create component manager instance
-		String message = "starting component manager ... ";
-		long cmStartTime = System.nanoTime();
-		ComponentManager cm = ComponentManager.getInstance();
-		long cmTime = System.nanoTime() - cmStartTime;
-		message += "OK (" + Helper.prettyPrintNanoSeconds(cmTime) + ")";
-		logger.info(message);
-
-		// create a mapping between components and prefixes in the conf file
-		Map<Class<? extends Component>, String> componentPrefixMapping = createComponentPrefixMapping();
-
-		// parse conf file
-		ConfParser parser = ConfParser.parseFile(file);
-
-		// step 1: detect knowledge sources
-		Set<KnowledgeSource> sources = new HashSet<KnowledgeSource>();
-		Map<URL, Class<? extends KnowledgeSource>> importedFiles = getImportedFiles(
-				parser, baseDir);
-		for (Map.Entry<URL, Class<? extends KnowledgeSource>> entry : importedFiles
-				.entrySet()) {
-			KnowledgeSource ks = cm.knowledgeSource(entry.getValue());
-			// apply URL entry (this assumes that every knowledge source has a
-			// configuration option "url"), so this may need to be changed in
-			// the
-			// future
-			cm.applyConfigEntry(ks, "url", entry.getKey().toString());
-
-			sources.add(ks);
-			configureComponent(cm, ks, componentPrefixMapping, parser);
-			initComponent(cm, ks);
-		}
-
-		// step 2: detect used reasoner
-		ConfFileOption reasonerOption = parser.getConfOptionsByName("reasoner");
-		ReasonerComponent reasoner = cm.reasoner(
-				getReasonerClass(reasonerOption), sources);
-		configureComponent(cm, reasoner, componentPrefixMapping, parser);
-		initComponent(cm, reasoner);
-		rs = cm.reasoningService(reasoner);
-
-	}
-
-	public void start() {
-		processOREMode(rs);
-
-	}
-
-	/**
-	 * creates a mapping from components to option prefix strings
-	 */
-	public static Map<Class<? extends Component>, String> createComponentPrefixMapping() {
-		Map<Class<? extends Component>, String> componentPrefixMapping = new HashMap<Class<? extends Component>, String>();
-		// knowledge sources
-		componentPrefixMapping.put(SparqlKnowledgeSource.class, "sparql");
-		// reasoners
-		componentPrefixMapping.put(DIGReasoner.class, "digReasoner");
-		componentPrefixMapping.put(OWLAPIReasoner.class, "owlAPIReasoner");
-		// learning problems - configured via + and - flags for examples
-		componentPrefixMapping.put(PosNegDefinitionLP.class,
-				"posNegDefinitionLP");
-		// learning algorithms
-		componentPrefixMapping.put(ROLearner.class, "refinement");
-		componentPrefixMapping.put(ExampleBasedROLComponent.class,
-				"refexamples");
-		componentPrefixMapping.put(GP.class, "gp");
-		return componentPrefixMapping;
-	}
-
-	/**
-	 * convenience method basically every prefix (e.g. "refinement" in
-	 * "refinement.horizontalExpFactor) corresponds to a specific component -
-	 * this way the CLI will automatically support any configuration options
-	 * supported by the component
-	 */
-	public static void configureComponent(ComponentManager cm,
-			Component component,
-			Map<Class<? extends Component>, String> componentPrefixMapping,
-			ConfParser parser) {
-		String prefix = componentPrefixMapping.get(component.getClass());
-		if (prefix != null)
-			configureComponent(cm, component, parser
-					.getConfOptionsByPrefix(prefix));
-	}
-
-	// convenience method - see above method
-	private static void configureComponent(ComponentManager cm,
-			Component component, List<ConfFileOption> options) {
-		if (options != null)
-			for (ConfFileOption option : options)
-				applyConfFileOption(cm, component, option);
-	}
-
-	// applies an option to a component - checks whether the option and its
-	// value is valid
-	private static void applyConfFileOption(ComponentManager cm,
-			Component component, ConfFileOption option) {
-		// the name of the option is suboption-part (the first part refers
-		// to its component)
-		String optionName = option.getSubOption();
-
-		ConfigOption<?> configOption = cm.getConfigOption(component.getClass(),
-				optionName);
-		// check whether such an option exists
-		if (configOption != null) {
-
-			// catch all invalid config options
-			try {
-
-				// perform compatibility checks
-				if (configOption instanceof StringConfigOption
-						&& option.isStringOption()) {
-
-					ConfigEntry<String> entry = new ConfigEntry<String>(
-							(StringConfigOption) configOption, option
-									.getStringValue());
-					cm.applyConfigEntry(component, entry);
-
-				} else if (configOption instanceof IntegerConfigOption
-						&& option.isIntegerOption()) {
-
-					ConfigEntry<Integer> entry = new ConfigEntry<Integer>(
-							(IntegerConfigOption) configOption, option
-									.getIntValue());
-					cm.applyConfigEntry(component, entry);
-
-				} else if (configOption instanceof DoubleConfigOption
-						&& (option.isIntegerOption() || option.isDoubleOption())) {
-
-					double value;
-					if (option.isIntegerOption())
-						value = option.getIntValue();
-					else
-						value = option.getDoubleValue();
-
-					ConfigEntry<Double> entry = new ConfigEntry<Double>(
-							(DoubleConfigOption) configOption, value);
-					cm.applyConfigEntry(component, entry);
-
-				} else if (configOption instanceof BooleanConfigOption
-						&& option.isStringOption()) {
-
-					ConfigEntry<Boolean> entry = new ConfigEntry<Boolean>(
-							(BooleanConfigOption) configOption, Datastructures
-									.strToBool(option.getStringValue()));
-					cm.applyConfigEntry(component, entry);
-
-				} else if (configOption instanceof StringSetConfigOption
-						&& option.isSetOption()) {
-
-					ConfigEntry<Set<String>> entry = new ConfigEntry<Set<String>>(
-							(StringSetConfigOption) configOption, option
-									.getSetValues());
-					cm.applyConfigEntry(component, entry);
-
-				} else if (configOption instanceof StringTupleListConfigOption
-						&& option.isListOption()) {
-
-					ConfigEntry<List<StringTuple>> entry = new ConfigEntry<List<StringTuple>>(
-							(StringTupleListConfigOption) configOption, option
-									.getListTuples());
-					cm.applyConfigEntry(component, entry);
-
-				} else {
-					handleError("The type of conf file entry \""
-							+ option.getFullName()
-							+ "\" is not correct: value \"" + option.getValue()
-							+ "\" not valid for option type \""
-							+ configOption.getClass().getName() + "\".");
-				}
-
-			} catch (InvalidConfigOptionValueException e) {
-				e.printStackTrace();
-				System.exit(0);
-			}
-
-		} else
-			handleError("Unknow option " + option + ".");
-	}
-
-	/**
-	 * detects all imported files and their format
-	 */
-	public static Map<URL, Class<? extends KnowledgeSource>> getImportedFiles(
-			ConfParser parser, String baseDir) {
-		List<List<String>> imports = parser.getFunctionCalls().get("import");
-		Map<URL, Class<? extends KnowledgeSource>> importedFiles = new HashMap<URL, Class<? extends KnowledgeSource>>();
-
-		if (imports != null) {
-			for (List<String> arguments : imports) {
-				// step 1: detect URL
-				URL url = null;
-				try {
-					String fileString = arguments.get(0);
-					if (fileString.startsWith("http:")) {
-						url = new URL(fileString);
-					} else {
-						File f = new File(baseDir, arguments.get(0));
-						url = f.toURI().toURL();
-					}
-				} catch (MalformedURLException e) {
-					e.printStackTrace();
-				}
-
-				// step 2: detect format
-				Class<? extends KnowledgeSource> ksClass;
-				if (arguments.size() == 1) {
-					String filename = url.getPath();
-					String ending = filename.substring(filename
-							.lastIndexOf(".") + 1);
-
-					if (ending.equals("rdf") || ending.equals("owl"))
-						ksClass = OWLFile.class;
-					else if (ending.equals("nt"))
-						ksClass = OWLFile.class;
-					else if (ending.equals("kb"))
-						ksClass = KBFile.class;
-					else {
-						System.err.println("Warning: no format given for "
-								+ arguments.get(0)
-								+ " and could not detect it. Chosing RDF/XML.");
-						ksClass = OWLFile.class;
-					}
-
-					importedFiles.put(url, ksClass);
-				} else {
-					String formatString = arguments.get(1);
-
-					if (formatString.equals("RDF/XML"))
-						ksClass = OWLFile.class;
-					else if (formatString.equals("KB"))
-						ksClass = KBFile.class;
-					else if (formatString.equals("SPARQL"))
-						ksClass = SparqlKnowledgeSource.class;
-					else if (formatString.equals("NT"))
-						ksClass = OWLFile.class;
-					else {
-						throw new RuntimeException(
-								"Unsupported knowledge source format "
-										+ formatString + ". Exiting.");
-					}
-
-					importedFiles.put(url, ksClass);
-				}
-			}
-		}
-
-		return importedFiles;
-	}
-
-	private static void initComponent(ComponentManager cm, Component component)
-			throws ComponentInitException {
-		String startMessage = "initialising component \""
-				+ cm.getComponentName(component.getClass()) + "\" ... ";
-		long initStartTime = System.nanoTime();
-		component.init();
-		// standard messsage is just "OK" but can be more detailed for certain
-		// components
-		String message = "OK";
-		if (component instanceof KBFile)
-			message = ((KBFile) component).getURL().toString() + " read";
-		else if (component instanceof DIGReasoner) {
-			DIGReasoner reasoner = (DIGReasoner) component;
-			message = "using " + reasoner.getIdentifier()
-					+ " connected via DIG 1.1 at "
-					+ reasoner.getReasonerURL().toString();
-		}
-
-		long initTime = System.nanoTime() - initStartTime;
-		logger.info(startMessage + message + " ("
-				+ Helper.prettyPrintNanoSeconds(initTime, false, false) + ")");
-	}
-
-	private static void processOREMode(ReasoningService rs) {
-		System.err.println("Concepts :" + rs.getAtomicConcepts());
-
-		System.out.println("Individuals " + rs.getIndividuals());
-		System.out
-				.println("Entering ORE mode. Enter a existing concept for learning(new) or q to quit");
-
-		String conceptStr = "";
-		do {
-			//Step 1: choose existing concept which should be (new) learned
-			System.out.print("enter concept: ");
-			// read input string
-			BufferedReader input = new BufferedReader(new InputStreamReader(
-					System.in));
-
-			try {
-				conceptStr = input.readLine();
-			} catch (IOException e) {
-				e.printStackTrace();
-			}
-
-			if (!conceptStr.equals("q")) {
-
-				// parse concept
-				Description concept = null;
-				boolean parsedCorrectly = true;
-
-				try {
-					concept = KBParser.parseConcept(conceptStr);
-
-				} catch (ParseException e1) {
-					e1.printStackTrace();
-					System.err
-							.println("The concept you entered could not be parsed. Please try again.");
-					parsedCorrectly = false;
-				} catch (TokenMgrError e) {
-					e.printStackTrace();
-					System.err
-							.println("An error occured during parsing. Please enter a syntactically valid concept.");
-					parsedCorrectly = false;
-				}
-
-				if (parsedCorrectly) {
-
-					// compute atomic concepts used in concept
-					SortedSet<NamedClass> occurringConcepts = new TreeSet<NamedClass>(
-							new ConceptComparator());
-					occurringConcepts.addAll(Helper.getAtomicConcepts(concept));
-
-					// substract existing concepts from detected
-					// concepts -> the resulting set should be
-					// empty, otherwise print a warning (the DIG reasoner
-					// will just treat them as concepts about which it
-					// has no knowledge - this makes it hard to
-					// detect typos
-					// (note that removeAll currently gives a different
-					// result here, because the comparator of the argument
-					// is used)
-					for (NamedClass ac : rs.getAtomicConcepts())
-						occurringConcepts.remove(ac);
-
-					boolean nonExistingConstructs = false;
-					if (occurringConcepts.size() != 0) {
-						System.out
-								.println("You used non-existing atomic concepts or roles. Please correct your query.");
-						if (occurringConcepts.size() > 0)
-
-							System.out.println("non-existing concepts: "
-									+ occurringConcepts);
-
-						nonExistingConstructs = true;
-					}
-
-					if (!nonExistingConstructs) {
-
-						// Step 2_1: choose all individuals of the concept as positive examples
-						SortedSet<Individual> posExamples = null;
-						posExamples = rs.retrieval(concept);
-						posExamples.removeAll(posExamples);
-						posExamples.add(new Individual(
-								"http://example.com/father#stefan"));
-						posExamples.add(new Individual(
-								"http://example.com/father#markus"));
-						posExamples.add(new Individual(
-								"http://example.com/father#martin"));
-
-						//Step 2_2: subtract positive examples from all individuals of the ontology
-						//->negative examples of the concepts
-						SortedSet<Individual> negExamples = null;
-						negExamples = rs.getIndividuals();
-						for (Individual rem_pos : posExamples)
-							negExamples.remove(rem_pos);
-						System.out.println("+" + posExamples);
-						System.out.println("-" + negExamples);
-
-						//Step 3: Start learning-algorithm
-
-						// step 3_1: set learning problem
-						ComponentManager cm = ComponentManager.getInstance();
-
-						PosNegDefinitionLP lp = new PosNegDefinitionLP(rs,
-								posExamples, negExamples);
-
-						try {
-							initComponent(cm, lp);
-						} catch (ComponentInitException e1) {
-							// TODO Auto-generated catch block
-							e1.printStackTrace();
-						}
-
-						// step 3_2: set learning algorithm
-
-						la = new ROLearner(lp, rs);
-
-						try {
-							initComponent(cm, la);
-						} catch (ComponentInitException e) {
-							// TODO Auto-generated catch block
-							e.printStackTrace();
-						}
-
-						Thread laThread = new Thread()
-						{
-							@Override
-							public void run(){
-								la.start();
-							}
-						};
-						laThread.start();
-						
-						
-						System.out.println(la.getBestSolutions(5));
-
-						//Step 4: Knowledge Engineer chooses one of the suggestions
-
-						//Step 5: Enrichment
-
-						//Step 6: Repair:-check which individuals cause inconsistency
-						//               -problem solving
-
-					}
-				}
-			}
-
-		} while (!conceptStr.equals("q"));
-
-	}
-
-	/**
-	 * error handling over the logger
-	 * 
-	 * @param message
-	 *            is a string and you message for problem
-	 */
-	public static void handleError(String message) {
-		logger.error(message);
-		System.exit(0);
-	}
-
-	public ReasoningService getReasoningService() {
-		return rs;
-	}
-
-	// edit by Tilo Hielscher
-
-	/**
-	 * Set Reasoner class. Define here all possible reasoners.
-	 * 
-	 * @param reasonerOption
-	 *            from config file
-	 * @return reasonerClass reasoner class
-	 */
-	public static Class<? extends ReasonerComponent> getReasonerClass(
-			ConfFileOption reasonerOption) {
-		Class<? extends ReasonerComponent> reasonerClass = null;
-		if (reasonerOption == null
-				|| reasonerOption.getStringValue().equals("dig"))
-			reasonerClass = DIGReasoner.class;
-		else if (reasonerOption.getStringValue().equals("owlAPI"))
-			reasonerClass = OWLAPIReasoner.class;
-		else if (reasonerOption.getStringValue().equals("fastRetrieval"))
-			reasonerClass = FastRetrievalReasoner.class;
-		else if (reasonerOption.getStringValue().equals("fastInstanceChecker"))
-			reasonerClass = FastInstanceChecker.class;
-		else {
-			handleError("Unknown value " + reasonerOption.getStringValue()
-					+ " for option \"reasoner\".");
-		}
-		return reasonerClass;
-	}
-
-	public static Class<? extends LearningAlgorithm> getLearningAlgorithm(
-			ConfFileOption algorithmOption) {
-		Class<? extends LearningAlgorithm> laClass = null;
-		if (algorithmOption == null
-				|| algorithmOption.getStringValue().equals("refinement"))
-			laClass = ROLearner.class;
-		else if (algorithmOption.getStringValue().equals("refexamples"))
-			laClass = ExampleBasedROLComponent.class;
-		else if (algorithmOption.getStringValue().equals("gp"))
-			laClass = GP.class;
-		else if (algorithmOption.getStringValue().equals("bruteForce"))
-			laClass = BruteForceLearner.class;
-		else if (algorithmOption.getStringValue().equals("randomGuesser"))
-			laClass = RandomGuesser.class;
-		else
-			handleError("Unknown value in " + algorithmOption);
-
-		return laClass;
-	}
-
-}

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/Wizard.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/Wizard.java	2008-03-28 20:22:07 UTC (rev 733)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/Wizard.java	2008-03-29 17:11:56 UTC (rev 734)
@@ -174,9 +174,9 @@
         
         wizardDialog.setModal(true);
         //wizardDialog.pack();
-       
-        wizardDialog.show();
+       wizardDialog.setVisible(true);
         
+        
         return returnCode;
     }
     

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/WizardController.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/WizardController.java	2008-03-28 20:22:07 UTC (rev 733)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/WizardController.java	2008-03-29 17:11:56 UTC (rev 734)
@@ -65,10 +65,11 @@
         Object nextPanelDescriptor = descriptor.getNextPanelDescriptor();
         
         //TODO nochmal \xFCberdenken
-        if(nextPanelDescriptor.equals("CONCEPT_CHOOSE_PANEL"))
+        if(nextPanelDescriptor.equals("CONCEPT_CHOOSE_PANEL")){
+        	//((ConceptPanelDescriptor)wizard.getModel().getPanelHashMap().get(nextPanelDescriptor)).panel3.getModel().clear();
         	new ConceptRetriever(nextPanelDescriptor).execute();
+        }
         
-        
         if (nextPanelDescriptor instanceof WizardPanelDescriptor.FinishIdentifier) {
             wizard.close(Wizard.FINISH_RETURN_CODE);
         } else {        
@@ -169,22 +170,23 @@
     	nextPanelID = nextPanelDescriptor;
     }
     	
-      @Override 
-      public Set<NamedClass> doInBackground()
-      {		
-    	  ((ConceptPanelDescriptor)wizard.getModel().getPanelHashMap().get(nextPanelID)).panel3.getBlinkLabel().start();
-    	  System.out.println("test1");
-    	  wizard.getModel().getOre().detectReasoner();
-    	  System.out.println("test2");
-    	  Set<NamedClass> ind = wizard.getModel().getOre().getReasoningService().getAtomicConcepts();
-    	  System.out.println("test3");
-    	  
-    	  System.out.println("test4");
-    	  
-      	
-      	return ind;
-      }
       
+      public Set<NamedClass> doInBackground() {
+
+			((ConceptPanelDescriptor) wizard.getModel().getPanelHashMap().get(
+					nextPanelID)).panel3.getStatusLabel().setText(
+					"Loading concepts");
+			((ConceptPanelDescriptor) wizard.getModel().getPanelHashMap().get(
+					nextPanelID)).panel3.getLoadingLabel().setBusy(true);
+
+			wizard.getModel().getOre().detectReasoner();
+
+			Set<NamedClass> ind = wizard.getModel().getOre()
+					.getReasoningService().getAtomicConcepts();
+
+			return ind;
+		}
+      
       public void done(){
     	  Set<NamedClass> ind = null;
     	  try {
@@ -202,10 +204,13 @@
     	  for (NamedClass cl : ind){
         		dm.addElement(cl);
     		    //nextPanel.panel3.getModel().addElement(cl);
-        		System.out.println(cl.toString());
+        		System.out.println(cl.getName());
     	  }
     	  nextPanel.panel3.getList().setModel(dm);
-    	  ((ConceptPanelDescriptor)wizard.getModel().getPanelHashMap().get(nextPanelID)).panel3.getBlinkLabel().stop();
+    	  ((ConceptPanelDescriptor) wizard.getModel().getPanelHashMap().get(
+					nextPanelID)).panel3.getStatusLabel().setText(
+					"Concepts loaded");
+    	  ((ConceptPanelDescriptor)wizard.getModel().getPanelHashMap().get(nextPanelID)).panel3.getLoadingLabel().setBusy(false);
       }
       
       

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/WizardModel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/WizardModel.java	2008-03-28 20:22:07 UTC (rev 733)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/WizardModel.java	2008-03-29 17:11:56 UTC (rev 734)
@@ -51,10 +51,10 @@
     
     private WizardPanelDescriptor currentPanel;
     
-    private HashMap panelHashmap;
+    private HashMap<Object, WizardPanelDescriptor> panelHashmap;
     
-    private HashMap buttonTextHashmap;
-    private HashMap buttonEnabledHashmap;
+    private HashMap<String, Object> buttonTextHashmap;
+    private HashMap<String, Boolean> buttonEnabledHashmap;
     
     private PropertyChangeSupport propertyChangeSupport;
     
@@ -65,10 +65,10 @@
      */    
     public WizardModel() {
         
-        panelHashmap = new HashMap();
+        panelHashmap = new HashMap<Object, WizardPanelDescriptor>();
         
-        buttonTextHashmap = new HashMap();
-        buttonEnabledHashmap = new HashMap();
+        buttonTextHashmap = new HashMap<String, Object>();
+        buttonEnabledHashmap = new HashMap<String, Boolean>();
         
         propertyChangeSupport = new PropertyChangeSupport(this);
         ore = new ORE();
@@ -107,8 +107,7 @@
         //  First, get the hashtable reference to the panel that should
         //  be displayed.
         
-        WizardPanelDescriptor nextPanel =
-            (WizardPanelDescriptor)panelHashmap.get(id);
+        WizardPanelDescriptor nextPanel = panelHashmap.get(id);
         
         //  If we couldn't find the panel that should be displayed, return
         //  false.
@@ -168,7 +167,7 @@
         
     
     Boolean getBackButtonEnabled() {
-        return (Boolean)buttonEnabledHashmap.get(BACK_BUTTON_ENABLED_PROPERTY);
+        return buttonEnabledHashmap.get(BACK_BUTTON_ENABLED_PROPERTY);
     }
     
     void setBackButtonEnabled(Boolean newValue) {
@@ -181,7 +180,7 @@
     }
 
     Boolean getNextFinishButtonEnabled() {
-        return (Boolean)buttonEnabledHashmap.get(NEXT_FINISH_BUTTON_ENABLED_PROPERTY);
+        return buttonEnabledHashmap.get(NEXT_FINISH_BUTTON_ENABLED_PROPERTY);
     }
     
     void setNextFinishButtonEnabled(Boolean newValue) {
@@ -194,7 +193,7 @@
     }
     
     Boolean getCancelButtonEnabled() {
-        return (Boolean)buttonEnabledHashmap.get(CANCEL_BUTTON_ENABLED_PROPERTY);
+        return buttonEnabledHashmap.get(CANCEL_BUTTON_ENABLED_PROPERTY);
     }
     
     void setCancelButtonEnabled(Boolean newValue) {
@@ -228,7 +227,7 @@
 		this.ore = ore;
 	}
 	
-	public HashMap getPanelHashMap(){
+	public HashMap<Object, WizardPanelDescriptor> getPanelHashMap(){
 		return panelHashmap;
 	}
     

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/WizardPanelNotFoundException.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/WizardPanelNotFoundException.java	2008-03-28 20:22:07 UTC (rev 733)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/WizardPanelNotFoundException.java	2008-03-29 17:11:56 UTC (rev 734)
@@ -1,7 +1,6 @@
 package org.dllearner.tools.ore;
 
 
-import java.io.*;
 
 public class WizardPanelNotFoundException extends RuntimeException {
         


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[DL-Learner SVN] SF.net SVN: dl-learner: [733] trunk/src/dl-learner/org/dllearner/gui/ TreeWindow.java

From: <ton...@us...> - 2008-03-28 20:22:14

Revision: 733
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=733&view=rev
Author:   tonytacker
Date:     2008-03-28 13:22:07 -0700 (Fri, 28 Mar 2008)

Log Message:
-----------
small fix

Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java

Modified: trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java	2008-03-27 13:26:15 UTC (rev 732)
+++ trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java	2008-03-28 20:22:07 UTC (rev 733)
@@ -87,7 +87,7 @@
 	 * 
 	 * @see javax.swing.event.TreeWillExpandListener#treeWillCollapse(javax.swing.event.TreeExpansionEvent)
 	 */
-	@Override
+	// @Override
 	public void treeWillCollapse(TreeExpansionEvent event) throws ExpandVetoException {
 	}
 
@@ -96,11 +96,13 @@
 	 * 
 	 * @see javax.swing.event.TreeWillExpandListener#treeWillExpand(javax.swing.event.TreeExpansionEvent)
 	 */
-	@Override
+	// @Override
 	public void treeWillExpand(TreeExpansionEvent event) throws ExpandVetoException {
-		//System.out.println("getIndexOfChild: "+ ebNodeModel.getIndexOfChild(rootNode, event.getPath()));
+		// System.out.println("getIndexOfChild: "+
+		// ebNodeModel.getIndexOfChild(rootNode, event.getPath()));
 
-		//System.out.println("row_for_path: " + this.tree.getRowForPath(event.getPath()));
+		// System.out.println("row_for_path: " +
+		// this.tree.getRowForPath(event.getPath()));
 		int index = this.tree.getRowForPath(event.getPath());
 		// ebNodeModel.getChild(rootNode, 9);
 		if (index > 0)


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[DL-Learner SVN] SF.net SVN: dl-learner: [732] trunk/src/dl-learner/org/dllearner

From: <sk...@us...> - 2008-03-27 13:26:17

Revision: 732
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=732&view=rev
Author:   sknappe
Date:     2008-03-27 06:26:15 -0700 (Thu, 27 Mar 2008)

Log Message:
-----------
deleted variable in Description
a web service method now exists to get instances to a certain concept

Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/core/owl/Description.java
    trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQueryDescriptionConvertVisitor.java
    trunk/src/dl-learner/org/dllearner/server/DLLearnerWS.java

Modified: trunk/src/dl-learner/org/dllearner/core/owl/Description.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/core/owl/Description.java	2008-03-27 08:26:58 UTC (rev 731)
+++ trunk/src/dl-learner/org/dllearner/core/owl/Description.java	2008-03-27 13:26:15 UTC (rev 732)
@@ -33,8 +33,7 @@
 	
     protected Description parent = null;
     protected List<Description> children = new LinkedList<Description>();
-    protected String sparqlVar = "subject";
-
+    
     public abstract int getArity();
     
     /**
@@ -202,11 +201,4 @@
 	
 	public abstract void accept(DescriptionVisitor visitor);
 
-	public String getSparqlVar() {
-		return sparqlVar;
-	}
-
-	public void setSparqlVar(String sparqlVar) {
-		this.sparqlVar = sparqlVar;
-	}
 }

Modified: trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQueryDescriptionConvertVisitor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQueryDescriptionConvertVisitor.java	2008-03-27 08:26:58 UTC (rev 731)
+++ trunk/src/dl-learner/org/dllearner/kb/sparql/SparqlQueryDescriptionConvertVisitor.java	2008-03-27 13:26:15 UTC (rev 732)
@@ -1,6 +1,8 @@
 package org.dllearner.kb.sparql;
 
 
+import java.util.Stack;
+
 import org.dllearner.algorithms.gp.ADC;
 import org.dllearner.core.owl.DatatypeExactCardinalityRestriction;
 import org.dllearner.core.owl.DatatypeMaxCardinalityRestriction;
@@ -32,10 +34,17 @@
  */
 public class SparqlQueryDescriptionConvertVisitor implements DescriptionVisitor{
 
+	private Stack<String> stack = new Stack<String>();
+	
 	private String query="";
 	
 	private int currentObject=0;
 	
+	public SparqlQueryDescriptionConvertVisitor()
+	{
+		stack.push("subject");
+	}
+	
 	public String getSparqlQuery()
 	{
 		query="SELECT ?subject\nWHERE {"+query;
@@ -44,6 +53,14 @@
 		return query;
 	}
 	
+	public static String getSparqlQuery(String description) throws ParseException
+	{
+		Description d = KBParser.parseConcept(description);
+		SparqlQueryDescriptionConvertVisitor visitor=new SparqlQueryDescriptionConvertVisitor();
+		d.accept(visitor);
+		return visitor.getSparqlQuery();
+	}
+	
 	public static String getSparqlQuery(Description description)
 	{
 		SparqlQueryDescriptionConvertVisitor visitor=new SparqlQueryDescriptionConvertVisitor();
@@ -58,7 +75,7 @@
 	 */
 	public static void main(String[] args) {
 		try {
-			Description d = KBParser.parseConcept("EXISTS \"http://dbpedia.org/property/disambiguates\".TOP");
+			String d = "EXISTS \"http://dbpedia.org/property/disambiguates\".TOP";
 			String query = SparqlQueryDescriptionConvertVisitor.getSparqlQuery(d);
 			System.out.println(d);
 			System.out.println(query);
@@ -87,10 +104,11 @@
 	 */
 	public void visit(ObjectSomeRestriction description) {
 		System.out.println("ObjectSomeRestriction");
-		query+="?"+description.getSparqlVar()+" <"+description.getRole()+"> ?object"+currentObject+".";
-		description.getChild(0).setSparqlVar("object"+currentObject);
+		query+="?"+stack.peek()+" <"+description.getRole()+"> ?object"+currentObject+".";
+		stack.push("object"+currentObject);
 		currentObject++;
 		description.getChild(0).accept(this);
+		stack.pop();
 		System.out.println(description.getRole());
 		System.out.println(description.getChild(0));
 	}
@@ -173,7 +191,7 @@
 	 */
 	public void visit(NamedClass description) {
 		System.out.println("NamedClass");
-		query+="?"+description.getSparqlVar()+" a <"+description.getName()+">";
+		query+="?"+stack.peek()+" a <"+description.getName()+">";
 	}
 
 	/* (non-Javadoc)

Modified: trunk/src/dl-learner/org/dllearner/server/DLLearnerWS.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/server/DLLearnerWS.java	2008-03-27 08:26:58 UTC (rev 731)
+++ trunk/src/dl-learner/org/dllearner/server/DLLearnerWS.java	2008-03-27 13:26:15 UTC (rev 732)
@@ -522,10 +522,10 @@
 	}
 	
 	@WebMethod
-	public int sparqlQueryThreaded(int sessionID, int componentID, final String query) throws ClientNotKnownException
+	public int sparqlQueryThreaded(int sessionID, int componentID, String query) throws ClientNotKnownException
 	{
 		final ClientState state = getState(sessionID);
-		final Component component = state.getComponent(componentID);
+		Component component = state.getComponent(componentID);
 		final int id=state.addQuery(((SparqlKnowledgeSource)component).sparqlQueryThreaded(query));
 		Thread sparqlThread = new Thread() {
 			@Override
@@ -591,10 +591,11 @@
 	}
 	
 	@WebMethod
-	public String getSparqlForConcept(int id) throws ClientNotKnownException {
+	public void SparqlRetrievalThreaded(int id, int componentID, String conceptString) throws ClientNotKnownException, ParseException {
 		ClientState state = getState(id);
-		Description solution=state.getLearningAlgorithm().getBestSolution();
-		return SparqlQueryDescriptionConvertVisitor.getSparqlQuery(solution);
+		// call parser to parse concept
+		String sparqlQuery = SparqlQueryDescriptionConvertVisitor.getSparqlQuery(conceptString);
+		sparqlQueryThreaded(id, componentID,sparqlQuery);
 	}
 	
 	@WebMethod


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[DL-Learner SVN] SF.net SVN: dl-learner: [731] trunk/src/dl-learner/org/dllearner/tools/ore/ IntroductionPanel.java

From: <lor...@us...> - 2008-03-27 08:27:08

Revision: 731
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=731&view=rev
Author:   lorenz_b
Date:     2008-03-27 01:26:58 -0700 (Thu, 27 Mar 2008)

Log Message:
-----------


Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanel.java

Modified: trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanel.java	2008-03-27 06:53:43 UTC (rev 730)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanel.java	2008-03-27 08:26:58 UTC (rev 731)
@@ -17,9 +17,7 @@
  
 	private JTextArea instructionsField;
     private JScrollPane jScrollPane1;
-  
-	
-      
+        
     private JLabel welcomeTitle;
     private JPanel contentPanel;
      
@@ -27,21 +25,11 @@
     
     public IntroductionPanel() {
         
-    
-    	
-		
-    
         contentPanel = getContentPanel();
     
-        
-    
-
         setLayout(new java.awt.BorderLayout());
 
-
-        
-        //add(leftPanel, BorderLayout.WEST);
-        
+     
         JPanel secondaryPanel = new JPanel();
         secondaryPanel.add(contentPanel, BorderLayout.NORTH);
         add(contentPanel, BorderLayout.CENTER);
@@ -51,8 +39,11 @@
     private JPanel getContentPanel() {
         
         JPanel contentPanel1 = new JPanel();
+        
         JPanel jPanel1 = new JPanel();
         
+        contentPanel1.setLayout(new java.awt.BorderLayout());
+        
         jScrollPane1 = new JScrollPane();
         instructionsField = new JTextArea();
         
@@ -69,38 +60,24 @@
         instructionsField.setFont(new Font("Serif",Font.PLAIN,14));
         instructionsField.setText("This is an test of a wizard dialog, which allows a knowledge engineer to select " +
         							"a concept of an ontology which should be (re)learned.  \n\nOn " +
-        							"the next page, choose a JAR file that contains some components.  It will find any " +
-        							"JavaBeans listed in the manifest, and also let you add classes from the JAR file.  " +
-        							"When the resulting NetBeans plug-in is installed in NetBeans, the components you " +
-        							"selected will be on the Component Palette, and can be dragged and dropped onto Swing " +
-        							"forms.  The library display name you enter is also the name that will be used for the " +
-        							"category in the component palette where your components will appear.");
+        							"On the next page, choose a OWL file that contains an ontology. It will find any " +
+        							"concepts listed in the manifest, and also the positive and negative examples of the concept.  " +
+        							"When the concept you selected is learned, you are able to add the axiom to the ontology " +
+        							"and after all you might be able to repair if necessary. " );
         instructionsField.setWrapStyleWord(true);
         jScrollPane1.setViewportView(instructionsField);
-
-        
-        
-        
-        
+              
         welcomeTitle = new JLabel();
         welcomeTitle.setBorder(BorderFactory.createMatteBorder(0, 0, 1, 0, new Color(0, 0, 0)));
-       
-        
-
-        contentPanel1.setLayout(new java.awt.BorderLayout());
-
         welcomeTitle.setFont(new java.awt.Font("MS Sans Serif", Font.BOLD, 14));
         welcomeTitle.setText("Welcome to the DL-Learner ORE-Tool!");
         contentPanel1.add(welcomeTitle, java.awt.BorderLayout.NORTH);
-
+        
         jPanel1.setLayout(new java.awt.GridLayout(0, 1,0,0));
-
-        //jPanel1.add(blankSpace);
-       
-     
         jPanel1.add(jScrollPane1);
-
         contentPanel1.add(jPanel1, java.awt.BorderLayout.CENTER);
+        
+      
 
         return contentPanel1;
         


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[DL-Learner SVN] SF.net SVN: dl-learner: [730] trunk/src/dl-learner/org/dllearner/tools/ore/ ORE.java

From: <lor...@us...> - 2008-03-27 06:53:49

Revision: 730
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=730&view=rev
Author:   lorenz_b
Date:     2008-03-26 23:53:43 -0700 (Wed, 26 Mar 2008)

Log Message:
-----------


Added Paths:
-----------
    trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java

Added: trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java	2008-03-27 06:53:43 UTC (rev 730)
@@ -0,0 +1,183 @@
+package org.dllearner.tools.ore;
+
+import java.io.File;
+import java.util.Set;
+import java.util.SortedSet;
+import java.util.TreeSet;
+
+import org.dllearner.algorithms.RandomGuesser;
+import org.dllearner.algorithms.refinement.ROLearner;
+import org.dllearner.core.ComponentInitException;
+import org.dllearner.core.ComponentManager;
+import org.dllearner.core.KnowledgeSource;
+import org.dllearner.core.LearningAlgorithm;
+import org.dllearner.core.LearningProblemUnsupportedException;
+import org.dllearner.core.ReasonerComponent;
+import org.dllearner.core.ReasoningService;
+import org.dllearner.core.owl.Description;
+import org.dllearner.core.owl.Individual;
+import org.dllearner.kb.OWLFile;
+import org.dllearner.learningproblems.PosNegDefinitionLP;
+import org.dllearner.parser.KBParser;
+import org.dllearner.parser.ParseException;
+import org.dllearner.reasoning.DIGReasoner;
+
+public class ORE {
+	
+	private LearningAlgorithm la;
+	private ReasoningService rs;
+	private KnowledgeSource ks; 
+	private PosNegDefinitionLP lp;
+	private ComponentManager cm;
+	SortedSet<Individual> posExamples;
+	SortedSet<Individual> negExamples;
+	Description concept;
+	
+	public ORE(){
+		
+		cm = ComponentManager.getInstance();
+	
+		
+	}
+	
+	// step 1: detect knowledge sources
+	
+	public void setKnowledgeSource(File f){
+	
+		Class<OWLFile> owl = OWLFile.class;
+		
+		
+			ks = cm.knowledgeSource(owl);
+		
+			cm.applyConfigEntry(ks, "url", f.toURI().toString());
+			
+			try {
+				ks.init();
+			} catch (ComponentInitException e) {
+				// TODO Auto-generated catch block
+				e.printStackTrace();
+			}
+		
+				
+	}
+	
+	
+	
+	public void detectReasoner(){
+		
+		ReasonerComponent reasoner = cm.reasoner(
+				DIGReasoner.class, ks);
+		
+		try {
+			reasoner.init();
+		} catch (ComponentInitException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		}
+		rs = cm.reasoningService(reasoner);
+	}
+	
+	public ReasoningService getReasoningService(){
+		return rs;
+	}
+	
+	public SortedSet<Individual> getPosExamples(){
+		return posExamples;
+	}
+	
+	public void setPosNegExamples(){
+		posExamples = rs.retrieval(concept);
+		negExamples = rs.getIndividuals();
+		for (Individual rem_pos : posExamples)
+			negExamples.remove(rem_pos);
+	}
+	
+	public SortedSet<Individual> getNegExamples(){
+		return negExamples;
+	}
+	
+	public void setLearningProblem(){
+		lp = new PosNegDefinitionLP(rs,posExamples, negExamples);
+		lp.init();
+	}
+	
+	public void setLearningAlgorithm(){
+		try {
+			la = cm.learningAlgorithm(ROLearner.class, lp, rs);
+		} catch (LearningProblemUnsupportedException e1) {
+			// TODO Auto-generated catch block
+			e1.printStackTrace();
+		}
+		//la = new ROLearner(lp, rs);
+		
+		Set<String> t = new TreeSet<String>();
+		t.add(concept.toString());
+		//cm.applyConfigEntry(la, "ignoredConcepts", t );
+		try {
+			la.init();
+		} catch (ComponentInitException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		}
+		
+	}
+	public void setConcept(String conceptStr){
+		try {
+			concept = KBParser.parseConcept(conceptStr);
+		} catch (ParseException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		}
+	}
+
+	
+	public void startLearningThread(){
+		Thread laThread = new Thread()
+		{
+			@Override
+			public void run(){
+				la.start();
+				
+			}
+		};
+		laThread.start();
+	}
+
+	public void start(){
+		this.setPosNegExamples();
+		this.setLearningProblem();
+		this.setLearningAlgorithm();
+		la.start();
+		this.startLearningThread();
+	}
+	
+	public Description getLearningResult(){
+		return la.getBestSolution();
+	}
+
+		
+	public static void main(String[] args){
+		
+		ORE test = new ORE();
+		//File owlFile = new File("examples/family/father.owl");
+		File owlFile = new File("src/dl-learner/org/dllearner/tools/ore/father.owl");
+		
+		test.setKnowledgeSource(owlFile);
+	
+		test.detectReasoner();
+		ReasoningService rs = test.getReasoningService();
+		System.err.println("Concepts :" + rs.getAtomicConcepts());
+		
+		
+		
+		test.setConcept("http://example.com/father#father");
+		test.setPosNegExamples();
+		System.out.println(test.posExamples);
+		System.out.println(test.negExamples);
+		test.setLearningProblem();
+		test.setLearningAlgorithm();
+		test.startLearningThread();
+	}
+	
+	
+}


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[DL-Learner SVN] SF.net SVN: dl-learner: [729] trunk/src/dl-learner/org/dllearner/gui/ TreeWindow.java

From: <ton...@us...> - 2008-03-27 05:49:13

Revision: 729
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=729&view=rev
Author:   tonytacker
Date:     2008-03-26 22:48:54 -0700 (Wed, 26 Mar 2008)

Log Message:
-----------
thats all i can test, sorry 

Modified Paths:
--------------
    trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java

Modified: trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java	2008-03-26 20:11:12 UTC (rev 728)
+++ trunk/src/dl-learner/org/dllearner/gui/TreeWindow.java	2008-03-27 05:48:54 UTC (rev 729)
@@ -21,17 +21,19 @@
  */
 
 import javax.swing.*;
+
 import javax.swing.event.TreeExpansionEvent;
-import javax.swing.event.TreeExpansionListener;
+import javax.swing.event.TreeWillExpandListener;
+import javax.swing.tree.ExpandVetoException;
+
 import org.dllearner.algorithms.refexamples.*;
 
-
 /**
  * TreeWindow
  * 
  * @author Tilo Hielscher
  */
-public class TreeWindow extends JFrame implements TreeExpansionListener {
+public class TreeWindow extends JFrame implements TreeWillExpandListener {
 
 	private static final long serialVersionUID = -5807192061389763835L;
 
@@ -39,7 +41,8 @@
 	private Config config;
 	private EBNodeTreeModel ebNodeModel;
 	private ExampleBasedNode rootNode;
-	
+	private JTree tree;
+
 	public TreeWindow(Config config) {
 		this.config = config;
 		this.setTitle("DL-Learner Tree");
@@ -57,20 +60,20 @@
 			ExampleBasedROLComponent ebrol = (ExampleBasedROLComponent) config
 					.getLearningAlgorithm();
 			this.rootNode = ebrol.getStartNode();
-			
+
 			System.out.println("childs1: " + rootNode.getChildren());
-			
+
 			this.ebNodeModel = new EBNodeTreeModel(rootNode);
 
-			// childrens to treeModel 
+			// childrens to treeModel
 			Object first = ebNodeModel.getChild(rootNode, 0);
 			System.out.println("getIndexOfChild: " + ebNodeModel.getIndexOfChild(rootNode, first));
 
-			//System.out.println("childs2: " + ebNodeModel.getChildren((ExampleBasedNode) first));
+			// System.out.println("childs2: " +
+			// ebNodeModel.getChildren((ExampleBasedNode) first));
 
-			
-			JTree tree = new JTree(ebNodeModel);
-			tree.addTreeExpansionListener(this);
+			tree = new JTree(ebNodeModel);
+			tree.addTreeWillExpandListener(this);
 			this.add(new JScrollPane(tree));
 		}
 
@@ -79,30 +82,30 @@
 		this.setVisible(true);
 	}
 
-	/* (non-Javadoc)
-	 * @see javax.swing.event.TreeExpansionListener#treeCollapsed(javax.swing.event.TreeExpansionEvent)
+	/*
+	 * (non-Javadoc)
+	 * 
+	 * @see javax.swing.event.TreeWillExpandListener#treeWillCollapse(javax.swing.event.TreeExpansionEvent)
 	 */
 	@Override
-	public void treeCollapsed(TreeExpansionEvent event) {
-		System.out.println("collapsed");
+	public void treeWillCollapse(TreeExpansionEvent event) throws ExpandVetoException {
 	}
 
-	/* (non-Javadoc)
-	 * @see javax.swing.event.TreeExpansionListener#treeExpanded(javax.swing.event.TreeExpansionEvent)
+	/*
+	 * (non-Javadoc)
+	 * 
+	 * @see javax.swing.event.TreeWillExpandListener#treeWillExpand(javax.swing.event.TreeExpansionEvent)
 	 */
 	@Override
-	public void treeExpanded(TreeExpansionEvent event) {
-		System.out.println("expanded: " + event.getPath());
-		//Object path = event.getPath();
-		
-		//System.out.println("childcount: " + ebNodeModel.getChildCount(path));
-		
-		
-		//ebNodeModel.getChild(event.getSource(), 0);
-		System.out.println("getIndexOfChild: " + ebNodeModel.getIndexOfChild(rootNode, event.getPath()));
-		
-		
-		ebNodeModel.getChild(rootNode, 9);
+	public void treeWillExpand(TreeExpansionEvent event) throws ExpandVetoException {
+		//System.out.println("getIndexOfChild: "+ ebNodeModel.getIndexOfChild(rootNode, event.getPath()));
+
+		//System.out.println("row_for_path: " + this.tree.getRowForPath(event.getPath()));
+		int index = this.tree.getRowForPath(event.getPath());
+		// ebNodeModel.getChild(rootNode, 9);
+		if (index > 0)
+			ebNodeModel.getChild(rootNode, index);
+
 	}
 
 }


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[DL-Learner SVN] SF.net SVN: dl-learner: [728] trunk/src/dl-learner/org/dllearner/tools/ore

From: <lor...@us...> - 2008-03-26 20:11:58

Revision: 728
          http://dl-learner.svn.sourceforge.net/dl-learner/?rev=728&view=rev
Author:   lorenz_b
Date:     2008-03-26 13:11:12 -0700 (Wed, 26 Mar 2008)

Log Message:
-----------
Wizard for ORE

Added Paths:
-----------
    trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java
    trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanelDescriptor.java
    trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanelDescriptor.java
    trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java
    trunk/src/dl-learner/org/dllearner/tools/ore/LeftPanel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/Main.java
    trunk/src/dl-learner/org/dllearner/tools/ore/ORE_alt.java
    trunk/src/dl-learner/org/dllearner/tools/ore/Wizard.java
    trunk/src/dl-learner/org/dllearner/tools/ore/WizardController.java
    trunk/src/dl-learner/org/dllearner/tools/ore/WizardModel.java
    trunk/src/dl-learner/org/dllearner/tools/ore/WizardPanelDescriptor.java
    trunk/src/dl-learner/org/dllearner/tools/ore/WizardPanelNotFoundException.java
    trunk/src/dl-learner/org/dllearner/tools/ore/father.owl

Removed Paths:
-------------
    trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java

Added: trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanel.java	2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,101 @@
+package org.dllearner.tools.ore;
+
+import java.awt.BorderLayout;
+import java.awt.Color;
+
+import javax.swing.DefaultListModel;
+import javax.swing.JLabel;
+import javax.swing.JList;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+import javax.swing.event.ListSelectionListener;
+
+public class ConceptPanel extends JPanel{
+
+
+
+	private javax.swing.JList conceptList;
+	
+	private JPanel contentPanel;
+	
+	private DefaultListModel model;
+	private BlinkLabel blink;	
+	
+	public ConceptPanel() {
+		
+		super();
+		model = new DefaultListModel();
+		blink = new BlinkLabel();
+		blink.setText("Loading Concepts");
+		contentPanel = getContentPanel();
+		setLayout(new java.awt.BorderLayout());
+		add(contentPanel,BorderLayout.CENTER);
+		add(blink, BorderLayout.SOUTH);
+	}
+
+	private JPanel getContentPanel() {
+		
+		JPanel contentPanel1 = new JPanel();
+		JScrollPane scroll = new JScrollPane();
+		
+			
+		conceptList = new JList(model);
+		scroll.setSize(100,100);
+		scroll.setViewportView(conceptList);
+				
+		contentPanel1.add(scroll);
+		
+		
+
+		return contentPanel1;
+	}
+	
+	public DefaultListModel getModel(){
+		return model;
+	}
+	
+	public void setModel(DefaultListModel dm){
+		conceptList.setModel(dm);
+	}
+	
+	public void addSelectionListener(ListSelectionListener l){
+		conceptList.addListSelectionListener(l);
+	}
+          
+    public JList getList(){
+    	return conceptList;
+    }
+    
+    public BlinkLabel getBlinkLabel(){
+    	return blink;
+    }
+    
+    class BlinkLabel extends JLabel implements Runnable{
+    	private boolean blinking = false;
+    	
+    	public void start(){
+    		blinking = true;
+    		new Thread(this).start();
+    	}
+    	public void stop(){
+    		blinking = false;
+    		setText("Done! Select Concept and press 'Next'");
+    	}
+    	public void run(){
+    		while(blinking){
+    			setForeground(Color.red);
+    			try {
+					Thread.sleep(100);
+				} catch (InterruptedException e) {
+					return;
+				}
+				setForeground(Color.black);
+    		}
+    	}
+    }
+ 
+
+
+	
+
+}
\ No newline at end of file

Added: trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ConceptPanelDescriptor.java	2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,60 @@
+package org.dllearner.tools.ore;
+
+import javax.swing.event.ListSelectionEvent;
+import javax.swing.event.ListSelectionListener;
+
+
+
+
+public class ConceptPanelDescriptor extends WizardPanelDescriptor implements ListSelectionListener{
+    
+    public static final String IDENTIFIER = "CONCEPT_CHOOSE_PANEL";
+    
+    ConceptPanel panel3;
+    
+    public ConceptPanelDescriptor() {
+        
+        panel3 = new ConceptPanel();
+        panel3.addSelectionListener(this);
+             
+        setPanelDescriptorIdentifier(IDENTIFIER);
+        setPanelComponent(panel3);
+     
+    }
+    
+    public Object getNextPanelDescriptor() {
+        return LearningPanelDescriptor.IDENTIFIER;
+    }
+    
+    public Object getBackPanelDescriptor() {
+        return KnowledgeSourcePanelDescriptor.IDENTIFIER;
+    }
+    
+    public void aboutToDisplayPanel() {
+        setNextButtonAccordingToConceptSelected();
+    }    
+
+
+	@Override
+	public void valueChanged(ListSelectionEvent e) {
+		setNextButtonAccordingToConceptSelected(); 
+		if (!e.getValueIsAdjusting()) 
+			 getWizardModel().getOre().setConcept(panel3.getList().getSelectedValue().toString());
+			
+	}
+	
+	private void setNextButtonAccordingToConceptSelected() {
+        
+    	if (panel3.getList().getSelectedValue()!= null){
+    		getWizard().setNextFinishButtonEnabled(true);
+    	}else{
+    		getWizard().setNextFinishButtonEnabled(false);
+    	}
+   
+        }
+    
+   
+
+    
+    
+}

Added: trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanel.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanel.java	2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,109 @@
+package org.dllearner.tools.ore;
+
+
+import java.awt.BorderLayout;
+import java.awt.Color;
+import java.awt.Font;
+
+import javax.swing.BorderFactory;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+import javax.swing.JTextArea;
+import javax.swing.UIManager;
+
+
+public class IntroductionPanel extends JPanel {
+ 
+	private JTextArea instructionsField;
+    private JScrollPane jScrollPane1;
+  
+	
+      
+    private JLabel welcomeTitle;
+    private JPanel contentPanel;
+     
+    
+    
+    public IntroductionPanel() {
+        
+    
+    	
+		
+    
+        contentPanel = getContentPanel();
+    
+        
+    
+
+        setLayout(new java.awt.BorderLayout());
+
+
+        
+        //add(leftPanel, BorderLayout.WEST);
+        
+        JPanel secondaryPanel = new JPanel();
+        secondaryPanel.add(contentPanel, BorderLayout.NORTH);
+        add(contentPanel, BorderLayout.CENTER);
+    }
+    
+    
+    private JPanel getContentPanel() {
+        
+        JPanel contentPanel1 = new JPanel();
+        JPanel jPanel1 = new JPanel();
+        
+        jScrollPane1 = new JScrollPane();
+        instructionsField = new JTextArea();
+        
+        
+        //setLayout(new GridBagLayout());
+        setBorder(BorderFactory.createEmptyBorder(12, 6, 12, 12));
+        jScrollPane1.setBorder(BorderFactory.createEmptyBorder(0, 0, 0, 0));
+        jScrollPane1.setViewportBorder(BorderFactory.createEmptyBorder(0, 0, 0, 0));
+        instructionsField.setBackground(UIManager.getDefaults().getColor("control"));
+        instructionsField.setColumns(20);
+        instructionsField.setEditable(false);
+        instructionsField.setLineWrap(true);
+        instructionsField.setRows(5);
+        instructionsField.setFont(new Font("Serif",Font.PLAIN,14));
+        instructionsField.setText("This is an test of a wizard dialog, which allows a knowledge engineer to select " +
+        							"a concept of an ontology which should be (re)learned.  \n\nOn " +
+        							"the next page, choose a JAR file that contains some components.  It will find any " +
+        							"JavaBeans listed in the manifest, and also let you add classes from the JAR file.  " +
+        							"When the resulting NetBeans plug-in is installed in NetBeans, the components you " +
+        							"selected will be on the Component Palette, and can be dragged and dropped onto Swing " +
+        							"forms.  The library display name you enter is also the name that will be used for the " +
+        							"category in the component palette where your components will appear.");
+        instructionsField.setWrapStyleWord(true);
+        jScrollPane1.setViewportView(instructionsField);
+
+        
+        
+        
+        
+        welcomeTitle = new JLabel();
+        welcomeTitle.setBorder(BorderFactory.createMatteBorder(0, 0, 1, 0, new Color(0, 0, 0)));
+       
+        
+
+        contentPanel1.setLayout(new java.awt.BorderLayout());
+
+        welcomeTitle.setFont(new java.awt.Font("MS Sans Serif", Font.BOLD, 14));
+        welcomeTitle.setText("Welcome to the DL-Learner ORE-Tool!");
+        contentPanel1.add(welcomeTitle, java.awt.BorderLayout.NORTH);
+
+        jPanel1.setLayout(new java.awt.GridLayout(0, 1,0,0));
+
+        //jPanel1.add(blankSpace);
+       
+     
+        jPanel1.add(jScrollPane1);
+
+        contentPanel1.add(jPanel1, java.awt.BorderLayout.CENTER);
+
+        return contentPanel1;
+        
+    }
+ 
+}

Added: trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanelDescriptor.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/IntroductionPanelDescriptor.java	2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,23 @@
+package org.dllearner.tools.ore;
+
+
+
+public class IntroductionPanelDescriptor extends WizardPanelDescriptor {
+    
+    public static final String IDENTIFIER = "INTRODUCTION_PANEL";
+    
+    public IntroductionPanelDescriptor() {
+        super(IDENTIFIER, new IntroductionPanel());
+    }
+    
+    public Object getNextPanelDescriptor() {
+        return KnowledgeSourcePanelDescriptor.IDENTIFIER;
+    }
+    
+    public Object getBackPanelDescriptor() {
+        return null;
+    }
+    
+   
+    
+}

Added: trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanel.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanel.java	2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,127 @@
+package org.dllearner.tools.ore;
+
+import java.awt.BorderLayout;
+import java.awt.event.ActionListener;
+import java.io.File;
+
+import javax.swing.JFileChooser;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.event.DocumentListener;
+import javax.swing.filechooser.FileFilter;
+
+public class KnowledgeSourcePanel extends JPanel{
+
+	
+	private javax.swing.JTextField fileURL;
+	private javax.swing.JButton browseButton;
+	
+	private JPanel contentPanel;
+	private LeftPanel leftPanel;
+	private JLabel message;
+	
+	public KnowledgeSourcePanel() {
+
+//		super();
+		leftPanel = new LeftPanel(1);
+		contentPanel = getContentPanel();
+		
+		setLayout(new java.awt.BorderLayout());
+		
+		//add(leftPanel,BorderLayout.WEST);
+		add(contentPanel,BorderLayout.CENTER);
+
+	}
+
+	private JPanel getContentPanel() {
+
+		JPanel contentPanel1 = new JPanel();
+		
+		message = new JLabel();
+		message.setText("enter or browse OWL file");
+		fileURL = new javax.swing.JTextField(40);
+		
+		browseButton = new javax.swing.JButton("browse");
+	
+		contentPanel1.setLayout(new BorderLayout());
+		
+		JPanel panel = new JPanel();
+		panel.add(fileURL);
+		panel.add(browseButton);
+		
+		contentPanel1.add(panel,BorderLayout.CENTER);
+		contentPanel1.add(message,BorderLayout.SOUTH);
+	
+		
+
+		return contentPanel1;
+	}
+	
+	public void addListeners(ActionListener l, DocumentListener d) {
+		browseButton.addActionListener(l);
+		fileURL.addActionListener(l);
+		fileURL.getDocument().addDocumentListener(d);
+    }
+	
+	
+	
+	public void openFileChooser(){
+		JFileChooser filechooser = new JFileChooser();
+		
+		filechooser.setFileSelectionMode(JFileChooser.FILES_ONLY);
+		String choosenPath = fileURL.getText();
+		if(!choosenPath.equals("") && (new File(choosenPath)).exists())
+			filechooser.setCurrentDirectory(new File(fileURL.getText()));
+	
+		filechooser.addChoosableFileFilter(new FileFilter() {
+		    public boolean accept(File f) {
+		      if (f.isDirectory()) return true;
+		      return f.getName().toLowerCase().endsWith(".owl");
+		    }
+		    public String getDescription () { return "OWLs"; }  
+		  });
+		int status = filechooser.showOpenDialog( null );
+        
+        if ( status == JFileChooser.APPROVE_OPTION ){
+        	String strURL = filechooser.getSelectedFile().getAbsolutePath();
+        	fileURL.setText(strURL);
+        
+            
+           
+        }else{
+            System.out.println( "Auswahl abgebrochen" );
+        }
+	}
+	
+	public boolean isExistingOWLFile(){
+		if(!fileURL.getText().equals("") && !getOWLFile().exists()){
+			
+			message.setText(fileURL.getText()+" does not exist");
+			return false;
+		}
+		if(!fileURL.getText().equals("") && (getOWLFile().isDirectory() || (getOWLFile().isFile() && !getOWLFile().getPath().endsWith(".owl")))){
+			System.err.println(getOWLFile().getPath());
+			message.setText(fileURL.getText()+" is not a OWL file");
+			return false;
+		}
+		if(fileURL.getText().equals("")){
+			message.setText("enter or browse OWL file");
+			return false;
+		}
+		if(getOWLFile().exists() && getOWLFile().getPath().endsWith(".owl")){
+			message.setText("");
+			return true;
+		}
+		return true;
+		
+		
+		
+	}
+
+	public File getOWLFile() {
+		return new File(fileURL.getText());
+	}
+
+	
+
+}

Added: trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanelDescriptor.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/KnowledgeSourcePanelDescriptor.java	2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,119 @@
+package org.dllearner.tools.ore;
+
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.util.Set;
+
+import javax.swing.SwingWorker;
+import javax.swing.event.DocumentEvent;
+import javax.swing.event.DocumentListener;
+
+import org.dllearner.core.owl.NamedClass;
+
+
+public class KnowledgeSourcePanelDescriptor extends WizardPanelDescriptor implements ActionListener, DocumentListener{
+    
+    public static final String IDENTIFIER = "KNOWLEDGESOURCE_CHOOSE_PANEL";
+    
+    KnowledgeSourcePanel panel2;
+    
+    public KnowledgeSourcePanelDescriptor() {
+        
+        panel2 = new KnowledgeSourcePanel();
+    
+        panel2.addListeners(this, this);
+        
+        setPanelDescriptorIdentifier(IDENTIFIER);
+        setPanelComponent(panel2);
+        
+    }
+    
+    public Object getNextPanelDescriptor() {
+        return ConceptPanelDescriptor.IDENTIFIER;
+    }
+    
+    public Object getBackPanelDescriptor() {
+        return IntroductionPanelDescriptor.IDENTIFIER;
+    }
+    
+    
+    public void aboutToDisplayPanel() {
+        setNextButtonAccordingToExistingOWLFile();
+    }    
+
+    public void actionPerformed(ActionEvent e) {
+    	String cmd = e.getActionCommand();
+    	if(cmd.equals("browse")){
+			panel2.openFileChooser();
+		}
+    	    	
+        setNextButtonAccordingToExistingOWLFile();
+    }
+    
+  
+            
+    
+    private void setNextButtonAccordingToExistingOWLFile() {
+         
+    	if (panel2.isExistingOWLFile()){
+    		getWizardModel().getOre().setKnowledgeSource(panel2.getOWLFile());
+        	getWizard().setNextFinishButtonEnabled(true);
+//        	new ConceptRetriever().execute();
+//            System.err.println("test");    
+        }
+    
+
+        	 
+         
+            
+         else
+            getWizard().setNextFinishButtonEnabled(false);           
+    
+    }
+   
+
+	@Override
+	public void changedUpdate(DocumentEvent e) {
+		setNextButtonAccordingToExistingOWLFile();
+		
+	}
+
+	@Override
+	public void insertUpdate(DocumentEvent e) {
+		setNextButtonAccordingToExistingOWLFile();
+		
+	}
+
+	@Override
+	public void removeUpdate(DocumentEvent e) {
+		setNextButtonAccordingToExistingOWLFile();
+		
+	}
+  class ConceptRetriever extends SwingWorker<Set<NamedClass>, NamedClass>
+  {
+    @Override 
+    public Set<NamedClass> doInBackground()
+    {		
+  	  getWizardModel().getOre().detectReasoner();
+  	  Set<NamedClass> ind = getWizardModel().getOre().getReasoningService().getAtomicConcepts();
+  	  ConceptPanelDescriptor nextPanel = (ConceptPanelDescriptor)getWizardModel().getPanelHashMap().get(getNextPanelDescriptor());
+  	  nextPanel.panel3.getModel().clear();
+   
+    	for (NamedClass cl : ind){
+    		publish(cl);
+    		 nextPanel.panel3.getModel().addElement(cl);
+    		System.out.println(cl.toString());
+    	}
+    	return ind;
+    }
+
+    
+    
+    
+  }
+	
+	
+    
+    
+    
+}

Added: trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanel.java	2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,73 @@
+package org.dllearner.tools.ore;
+
+import java.awt.BorderLayout;
+import java.awt.event.ActionListener;
+
+import javax.swing.DefaultListModel;
+import javax.swing.JButton;
+import javax.swing.JLabel;
+import javax.swing.JList;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+
+public class LearningPanel extends JPanel{
+
+
+
+	private javax.swing.JList conceptList;
+	
+	private JPanel contentPanel;
+	
+	private DefaultListModel model;
+	private JLabel result;
+	private JButton run;
+	
+	public LearningPanel() {
+		
+		super();
+		model = new DefaultListModel();
+		result = new JLabel();
+		run = new JButton("Run");
+		contentPanel = getContentPanel();
+		setLayout(new java.awt.BorderLayout());
+		add(run,BorderLayout.EAST);
+		add(contentPanel,BorderLayout.CENTER);
+		add(result, BorderLayout.SOUTH);
+	}
+
+	private JPanel getContentPanel() {
+		
+		JPanel contentPanel1 = new JPanel();
+		JScrollPane scroll = new JScrollPane();
+		
+			
+		conceptList = new JList(model);
+		scroll.setSize(100,100);
+		scroll.setViewportView(conceptList);
+				
+		contentPanel1.add(scroll);
+		
+		
+
+		return contentPanel1;
+	}
+	
+	public void addButtonListener(ActionListener a){
+		run.addActionListener(a);
+	}
+	
+	public void setResult(String resultStr){
+		result.setText(resultStr);
+	}
+	
+	
+	
+	
+	
+}  
+    
+ 
+
+
+	
+

Added: trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LearningPanelDescriptor.java	2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,82 @@
+package org.dllearner.tools.ore;
+
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.util.concurrent.ExecutionException;
+
+import javax.swing.SwingWorker;
+
+import org.dllearner.core.owl.Description;
+
+
+
+
+public class LearningPanelDescriptor extends WizardPanelDescriptor implements ActionListener{
+    
+    public static final String IDENTIFIER = "LEARNING_PANEL";
+    
+    LearningPanel panel4;
+    
+    public LearningPanelDescriptor() {
+        
+        panel4 = new LearningPanel();
+        panel4.addButtonListener(this);
+             
+        setPanelDescriptorIdentifier(IDENTIFIER);
+        setPanelComponent(panel4);
+     
+    }
+    
+    public Object getNextPanelDescriptor() {
+        return LearningPanelDescriptor.IDENTIFIER;
+    }
+    
+    public Object getBackPanelDescriptor() {
+        return ConceptPanelDescriptor.IDENTIFIER;
+    }
+    
+ 
+    public void displayingPanel(){
+    	
+    }
+    
+    class Result extends SwingWorker<Description, Void>
+    {
+      @Override 
+      public Description doInBackground()
+      {		
+    	  getWizardModel().getOre().start();
+    	  Description result = getWizardModel().getOre().getLearningResult();
+    	
+      	      	      
+      	return result;
+      }
+      
+      public void done(){
+    	  Description result=null;
+		try {
+			result = get();
+		} catch (InterruptedException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		} catch (ExecutionException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		}
+    	  panel4.setResult(result.toString());
+      }
+      
+      
+      
+    }
+
+	
+    
+    
+
+
+	@Override
+	public void actionPerformed(ActionEvent arg0) {
+		new Result().execute();
+		
+	}}

Added: trunk/src/dl-learner/org/dllearner/tools/ore/LeftPanel.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/LeftPanel.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/LeftPanel.java	2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,59 @@
+package org.dllearner.tools.ore;
+
+import java.awt.BorderLayout;
+import java.awt.Dimension;
+import java.awt.Font;
+import java.awt.GridLayout;
+
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+
+public class LeftPanel extends JPanel{
+
+	private JLabel[] jLabel;
+	
+	public LeftPanel(int i){
+		
+		jLabel = new JLabel[5];
+		setBackground(new java.awt.Color(255, 255, 255));
+    	JPanel panel2 = new JPanel();
+    	panel2.setBackground(new java.awt.Color(255, 255, 255));
+    	panel2.setLayout(new GridLayout(5,1,0,10));
+    	jLabel[0] = new JLabel("1. Introduction");
+		jLabel[1] = new JLabel("2. Knowledge Source");
+		jLabel[2] = new JLabel("3. Concept");
+		jLabel[3] = new JLabel("4. Examples");
+		jLabel[4] = new JLabel("5. Learning");
+		
+		jLabel[i].setFont(jLabel[i].getFont().deriveFont(Font.BOLD));
+		
+		for(JLabel current : jLabel)
+			panel2.add(current);		
+		setLayout(new BorderLayout());
+		setPreferredSize(new Dimension(140,500));
+		add(panel2, BorderLayout.NORTH);
+		
+	}
+	
+	public void set(int i){
+		removeAll();
+	
+		setBackground(new java.awt.Color(255, 255, 255));
+    	JPanel panel2 = new JPanel();
+    	panel2.setBackground(new java.awt.Color(255, 255, 255));
+    	panel2.setLayout(new GridLayout(5,1,0,10));
+    	jLabel[0] = new JLabel("1. Introduction");
+		jLabel[1] = new JLabel("2. Knowledge Source");
+		jLabel[2] = new JLabel("3. Concept");
+		jLabel[3] = new JLabel("4. Examples");
+		jLabel[4] = new JLabel("5. Learning");
+		
+		jLabel[i].setFont(jLabel[i].getFont().deriveFont(Font.BOLD));
+		
+		for(JLabel current : jLabel)
+			panel2.add(current);		
+		setLayout(new BorderLayout());
+		add(panel2, BorderLayout.NORTH);
+	}
+	
+}

Added: trunk/src/dl-learner/org/dllearner/tools/ore/Main.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/Main.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/Main.java	2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,54 @@
+package org.dllearner.tools.ore;
+
+import javax.swing.UIManager;
+import javax.swing.UnsupportedLookAndFeelException;
+
+
+
+public class Main {
+    
+    public static void main(String[] args) {
+    	try {
+			UIManager.setLookAndFeel(
+			        UIManager.getSystemLookAndFeelClassName());
+		} catch (ClassNotFoundException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		} catch (InstantiationException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		} catch (IllegalAccessException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		} catch (UnsupportedLookAndFeelException e) {
+			// TODO Auto-generated catch block
+			e.printStackTrace();
+		}
+        Wizard wizard = new Wizard();
+        wizard.getDialog().setTitle("DL-Learner ORE-Tool");
+        wizard.getDialog().setSize(700, 400);
+        
+        WizardPanelDescriptor descriptor1 = new IntroductionPanelDescriptor();
+        wizard.registerWizardPanel(IntroductionPanelDescriptor.IDENTIFIER, descriptor1);
+
+        WizardPanelDescriptor descriptor2 = new KnowledgeSourcePanelDescriptor();
+        wizard.registerWizardPanel(KnowledgeSourcePanelDescriptor.IDENTIFIER, descriptor2);
+
+        WizardPanelDescriptor descriptor3 = new ConceptPanelDescriptor();
+        wizard.registerWizardPanel(ConceptPanelDescriptor.IDENTIFIER, descriptor3);
+        
+        WizardPanelDescriptor descriptor4 = new LearningPanelDescriptor();
+        wizard.registerWizardPanel(LearningPanelDescriptor.IDENTIFIER, descriptor4);
+        
+        wizard.setCurrentPanel(IntroductionPanelDescriptor.IDENTIFIER);
+        
+        int ret = wizard.showModalDialog();
+        
+        System.out.println("Dialog return code is (0=Finish,1=Cancel,2=Error): " + ret);
+       
+        
+        System.exit(0);
+        
+    }
+    
+}

Deleted: trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java	2008-03-26 15:49:00 UTC (rev 727)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java	2008-03-26 20:11:12 UTC (rev 728)
@@ -1,610 +0,0 @@
-/**
- * Copyright (C) 2007-2008, Jens Lehmann
- *
- * This file is part of DL-Learner.
- * 
- * DL-Learner is free software; you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation; either version 3 of the License, or
- * (at your option) any later version.
- *
- * DL-Learner is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
- *
- */
-package org.dllearner.tools.ore;
-
-import java.io.BufferedReader;
-import java.io.File;
-import java.io.IOException;
-import java.io.InputStreamReader;
-import java.net.MalformedURLException;
-import java.net.URL;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.SortedSet;
-import java.util.TreeSet;
-
-import org.apache.log4j.ConsoleAppender;
-import org.apache.log4j.Level;
-import org.apache.log4j.Logger;
-import org.apache.log4j.SimpleLayout;
-import org.dllearner.algorithms.BruteForceLearner;
-import org.dllearner.algorithms.RandomGuesser;
-import org.dllearner.algorithms.gp.GP;
-import org.dllearner.algorithms.refexamples.ExampleBasedROLComponent;
-import org.dllearner.algorithms.refinement.ROLearner;
-import org.dllearner.cli.ConfFileOption;
-import org.dllearner.core.Component;
-import org.dllearner.core.ComponentInitException;
-import org.dllearner.core.ComponentManager;
-import org.dllearner.core.KnowledgeSource;
-import org.dllearner.core.LearningAlgorithm;
-import org.dllearner.core.ReasonerComponent;
-import org.dllearner.core.ReasoningService;
-import org.dllearner.core.config.BooleanConfigOption;
-import org.dllearner.core.config.ConfigEntry;
-import org.dllearner.core.config.ConfigOption;
-import org.dllearner.core.config.DoubleConfigOption;
-import org.dllearner.core.config.IntegerConfigOption;
-import org.dllearner.core.config.InvalidConfigOptionValueException;
-import org.dllearner.core.config.StringConfigOption;
-import org.dllearner.core.config.StringSetConfigOption;
-import org.dllearner.core.config.StringTupleListConfigOption;
-import org.dllearner.core.owl.Description;
-import org.dllearner.core.owl.Individual;
-import org.dllearner.core.owl.NamedClass;
-import org.dllearner.kb.KBFile;
-import org.dllearner.kb.OWLFile;
-import org.dllearner.kb.sparql.SparqlKnowledgeSource;
-import org.dllearner.learningproblems.PosNegDefinitionLP;
-import org.dllearner.parser.ConfParser;
-import org.dllearner.parser.KBParser;
-import org.dllearner.parser.ParseException;
-import org.dllearner.parser.TokenMgrError;
-import org.dllearner.reasoning.DIGReasoner;
-import org.dllearner.reasoning.FastInstanceChecker;
-import org.dllearner.reasoning.FastRetrievalReasoner;
-import org.dllearner.reasoning.OWLAPIReasoner;
-import org.dllearner.utilities.ConceptComparator;
-import org.dllearner.utilities.Datastructures;
-import org.dllearner.utilities.Helper;
-import org.dllearner.utilities.StringTuple;
-
-/**
- * Start class for the ontology repair and enrichment tool.
- * 
- * @author Lorenz Buehmann.
- *
- */
-public class ORE {
-
-	private static Logger logger = Logger.getRootLogger();
-
-	private static LearningAlgorithm la;
-	private ReasoningService rs;
-
-	/**
-	 * Entry point for CLI interface.
-	 * 
-	 * @param args
-	 */
-	public static void main(String[] args) throws ComponentInitException {
-
-		File file = new File(args[args.length - 1]);
-
-		// create logger (a simple logger which outputs
-		// its messages to the console)
-		SimpleLayout layout = new SimpleLayout();
-		ConsoleAppender consoleAppender = new ConsoleAppender(layout);
-		logger.removeAllAppenders();
-		logger.addAppender(consoleAppender);
-		logger.setLevel(Level.DEBUG);
-
-		ORE ore = null;
-		ore = new ORE(file);
-		ore.start();
-	}
-
-	/**
-	 * Initialise all components based on conf file.
-	 * 
-	 * @param file
-	 *            Conf file to read.
-	 * @throws ComponentInitException
-	 */
-	public ORE(File file) throws ComponentInitException {
-		String baseDir = file.getParentFile().getPath();
-
-		// create component manager instance
-		String message = "starting component manager ... ";
-		long cmStartTime = System.nanoTime();
-		ComponentManager cm = ComponentManager.getInstance();
-		long cmTime = System.nanoTime() - cmStartTime;
-		message += "OK (" + Helper.prettyPrintNanoSeconds(cmTime) + ")";
-		logger.info(message);
-
-		// create a mapping between components and prefixes in the conf file
-		Map<Class<? extends Component>, String> componentPrefixMapping = createComponentPrefixMapping();
-
-		// parse conf file
-		ConfParser parser = ConfParser.parseFile(file);
-
-		// step 1: detect knowledge sources
-		Set<KnowledgeSource> sources = new HashSet<KnowledgeSource>();
-		Map<URL, Class<? extends KnowledgeSource>> importedFiles = getImportedFiles(
-				parser, baseDir);
-		for (Map.Entry<URL, Class<? extends KnowledgeSource>> entry : importedFiles
-				.entrySet()) {
-			KnowledgeSource ks = cm.knowledgeSource(entry.getValue());
-			// apply URL entry (this assumes that every knowledge source has a
-			// configuration option "url"), so this may need to be changed in
-			// the
-			// future
-			cm.applyConfigEntry(ks, "url", entry.getKey().toString());
-
-			sources.add(ks);
-			configureComponent(cm, ks, componentPrefixMapping, parser);
-			initComponent(cm, ks);
-		}
-
-		// step 2: detect used reasoner
-		ConfFileOption reasonerOption = parser.getConfOptionsByName("reasoner");
-		ReasonerComponent reasoner = cm.reasoner(
-				getReasonerClass(reasonerOption), sources);
-		configureComponent(cm, reasoner, componentPrefixMapping, parser);
-		initComponent(cm, reasoner);
-		rs = cm.reasoningService(reasoner);
-
-	}
-
-	public void start() {
-		processOREMode(rs);
-
-	}
-
-	/**
-	 * creates a mapping from components to option prefix strings
-	 */
-	public static Map<Class<? extends Component>, String> createComponentPrefixMapping() {
-		Map<Class<? extends Component>, String> componentPrefixMapping = new HashMap<Class<? extends Component>, String>();
-		// knowledge sources
-		componentPrefixMapping.put(SparqlKnowledgeSource.class, "sparql");
-		// reasoners
-		componentPrefixMapping.put(DIGReasoner.class, "digReasoner");
-		componentPrefixMapping.put(OWLAPIReasoner.class, "owlAPIReasoner");
-		// learning problems - configured via + and - flags for examples
-		componentPrefixMapping.put(PosNegDefinitionLP.class,
-				"posNegDefinitionLP");
-		// learning algorithms
-		componentPrefixMapping.put(ROLearner.class, "refinement");
-		componentPrefixMapping.put(ExampleBasedROLComponent.class,
-				"refexamples");
-		componentPrefixMapping.put(GP.class, "gp");
-		return componentPrefixMapping;
-	}
-
-	/**
-	 * convenience method basically every prefix (e.g. "refinement" in
-	 * "refinement.horizontalExpFactor) corresponds to a specific component -
-	 * this way the CLI will automatically support any configuration options
-	 * supported by the component
-	 */
-	public static void configureComponent(ComponentManager cm,
-			Component component,
-			Map<Class<? extends Component>, String> componentPrefixMapping,
-			ConfParser parser) {
-		String prefix = componentPrefixMapping.get(component.getClass());
-		if (prefix != null)
-			configureComponent(cm, component, parser
-					.getConfOptionsByPrefix(prefix));
-	}
-
-	// convenience method - see above method
-	private static void configureComponent(ComponentManager cm,
-			Component component, List<ConfFileOption> options) {
-		if (options != null)
-			for (ConfFileOption option : options)
-				applyConfFileOption(cm, component, option);
-	}
-
-	// applies an option to a component - checks whether the option and its
-	// value is valid
-	private static void applyConfFileOption(ComponentManager cm,
-			Component component, ConfFileOption option) {
-		// the name of the option is suboption-part (the first part refers
-		// to its component)
-		String optionName = option.getSubOption();
-
-		ConfigOption<?> configOption = cm.getConfigOption(component.getClass(),
-				optionName);
-		// check whether such an option exists
-		if (configOption != null) {
-
-			// catch all invalid config options
-			try {
-
-				// perform compatibility checks
-				if (configOption instanceof StringConfigOption
-						&& option.isStringOption()) {
-
-					ConfigEntry<String> entry = new ConfigEntry<String>(
-							(StringConfigOption) configOption, option
-									.getStringValue());
-					cm.applyConfigEntry(component, entry);
-
-				} else if (configOption instanceof IntegerConfigOption
-						&& option.isIntegerOption()) {
-
-					ConfigEntry<Integer> entry = new ConfigEntry<Integer>(
-							(IntegerConfigOption) configOption, option
-									.getIntValue());
-					cm.applyConfigEntry(component, entry);
-
-				} else if (configOption instanceof DoubleConfigOption
-						&& (option.isIntegerOption() || option.isDoubleOption())) {
-
-					double value;
-					if (option.isIntegerOption())
-						value = option.getIntValue();
-					else
-						value = option.getDoubleValue();
-
-					ConfigEntry<Double> entry = new ConfigEntry<Double>(
-							(DoubleConfigOption) configOption, value);
-					cm.applyConfigEntry(component, entry);
-
-				} else if (configOption instanceof BooleanConfigOption
-						&& option.isStringOption()) {
-
-					ConfigEntry<Boolean> entry = new ConfigEntry<Boolean>(
-							(BooleanConfigOption) configOption, Datastructures
-									.strToBool(option.getStringValue()));
-					cm.applyConfigEntry(component, entry);
-
-				} else if (configOption instanceof StringSetConfigOption
-						&& option.isSetOption()) {
-
-					ConfigEntry<Set<String>> entry = new ConfigEntry<Set<String>>(
-							(StringSetConfigOption) configOption, option
-									.getSetValues());
-					cm.applyConfigEntry(component, entry);
-
-				} else if (configOption instanceof StringTupleListConfigOption
-						&& option.isListOption()) {
-
-					ConfigEntry<List<StringTuple>> entry = new ConfigEntry<List<StringTuple>>(
-							(StringTupleListConfigOption) configOption, option
-									.getListTuples());
-					cm.applyConfigEntry(component, entry);
-
-				} else {
-					handleError("The type of conf file entry \""
-							+ option.getFullName()
-							+ "\" is not correct: value \"" + option.getValue()
-							+ "\" not valid for option type \""
-							+ configOption.getClass().getName() + "\".");
-				}
-
-			} catch (InvalidConfigOptionValueException e) {
-				e.printStackTrace();
-				System.exit(0);
-			}
-
-		} else
-			handleError("Unknow option " + option + ".");
-	}
-
-	/**
-	 * detects all imported files and their format
-	 */
-	public static Map<URL, Class<? extends KnowledgeSource>> getImportedFiles(
-			ConfParser parser, String baseDir) {
-		List<List<String>> imports = parser.getFunctionCalls().get("import");
-		Map<URL, Class<? extends KnowledgeSource>> importedFiles = new HashMap<URL, Class<? extends KnowledgeSource>>();
-
-		if (imports != null) {
-			for (List<String> arguments : imports) {
-				// step 1: detect URL
-				URL url = null;
-				try {
-					String fileString = arguments.get(0);
-					if (fileString.startsWith("http:")) {
-						url = new URL(fileString);
-					} else {
-						File f = new File(baseDir, arguments.get(0));
-						url = f.toURI().toURL();
-					}
-				} catch (MalformedURLException e) {
-					e.printStackTrace();
-				}
-
-				// step 2: detect format
-				Class<? extends KnowledgeSource> ksClass;
-				if (arguments.size() == 1) {
-					String filename = url.getPath();
-					String ending = filename.substring(filename
-							.lastIndexOf(".") + 1);
-
-					if (ending.equals("rdf") || ending.equals("owl"))
-						ksClass = OWLFile.class;
-					else if (ending.equals("nt"))
-						ksClass = OWLFile.class;
-					else if (ending.equals("kb"))
-						ksClass = KBFile.class;
-					else {
-						System.err.println("Warning: no format given for "
-								+ arguments.get(0)
-								+ " and could not detect it. Chosing RDF/XML.");
-						ksClass = OWLFile.class;
-					}
-
-					importedFiles.put(url, ksClass);
-				} else {
-					String formatString = arguments.get(1);
-
-					if (formatString.equals("RDF/XML"))
-						ksClass = OWLFile.class;
-					else if (formatString.equals("KB"))
-						ksClass = KBFile.class;
-					else if (formatString.equals("SPARQL"))
-						ksClass = SparqlKnowledgeSource.class;
-					else if (formatString.equals("NT"))
-						ksClass = OWLFile.class;
-					else {
-						throw new RuntimeException(
-								"Unsupported knowledge source format "
-										+ formatString + ". Exiting.");
-					}
-
-					importedFiles.put(url, ksClass);
-				}
-			}
-		}
-
-		return importedFiles;
-	}
-
-	private static void initComponent(ComponentManager cm, Component component)
-			throws ComponentInitException {
-		String startMessage = "initialising component \""
-				+ cm.getComponentName(component.getClass()) + "\" ... ";
-		long initStartTime = System.nanoTime();
-		component.init();
-		// standard messsage is just "OK" but can be more detailed for certain
-		// components
-		String message = "OK";
-		if (component instanceof KBFile)
-			message = ((KBFile) component).getURL().toString() + " read";
-		else if (component instanceof DIGReasoner) {
-			DIGReasoner reasoner = (DIGReasoner) component;
-			message = "using " + reasoner.getIdentifier()
-					+ " connected via DIG 1.1 at "
-					+ reasoner.getReasonerURL().toString();
-		}
-
-		long initTime = System.nanoTime() - initStartTime;
-		logger.info(startMessage + message + " ("
-				+ Helper.prettyPrintNanoSeconds(initTime, false, false) + ")");
-	}
-
-	private static void processOREMode(ReasoningService rs) {
-		System.err.println("Concepts :" + rs.getAtomicConcepts());
-
-		System.out.println("Individuals " + rs.getIndividuals());
-		System.out
-				.println("Entering ORE mode. Enter a existing concept for learning(new) or q to quit");
-
-		String conceptStr = "";
-		do {
-			//Step 1: choose existing concept which should be (new) learned
-			System.out.print("enter concept: ");
-			// read input string
-			BufferedReader input = new BufferedReader(new InputStreamReader(
-					System.in));
-
-			try {
-				conceptStr = input.readLine();
-			} catch (IOException e) {
-				e.printStackTrace();
-			}
-
-			if (!conceptStr.equals("q")) {
-
-				// parse concept
-				Description concept = null;
-				boolean parsedCorrectly = true;
-
-				try {
-					concept = KBParser.parseConcept(conceptStr);
-
-				} catch (ParseException e1) {
-					e1.printStackTrace();
-					System.err
-							.println("The concept you entered could not be parsed. Please try again.");
-					parsedCorrectly = false;
-				} catch (TokenMgrError e) {
-					e.printStackTrace();
-					System.err
-							.println("An error occured during parsing. Please enter a syntactically valid concept.");
-					parsedCorrectly = false;
-				}
-
-				if (parsedCorrectly) {
-
-					// compute atomic concepts used in concept
-					SortedSet<NamedClass> occurringConcepts = new TreeSet<NamedClass>(
-							new ConceptComparator());
-					occurringConcepts.addAll(Helper.getAtomicConcepts(concept));
-
-					// substract existing concepts from detected
-					// concepts -> the resulting set should be
-					// empty, otherwise print a warning (the DIG reasoner
-					// will just treat them as concepts about which it
-					// has no knowledge - this makes it hard to
-					// detect typos
-					// (note that removeAll currently gives a different
-					// result here, because the comparator of the argument
-					// is used)
-					for (NamedClass ac : rs.getAtomicConcepts())
-						occurringConcepts.remove(ac);
-
-					boolean nonExistingConstructs = false;
-					if (occurringConcepts.size() != 0) {
-						System.out
-								.println("You used non-existing atomic concepts or roles. Please correct your query.");
-						if (occurringConcepts.size() > 0)
-
-							System.out.println("non-existing concepts: "
-									+ occurringConcepts);
-
-						nonExistingConstructs = true;
-					}
-
-					if (!nonExistingConstructs) {
-
-						// Step 2_1: choose all individuals of the concept as positive examples
-						SortedSet<Individual> posExamples = null;
-						posExamples = rs.retrieval(concept);
-						posExamples.removeAll(posExamples);
-						posExamples.add(new Individual(
-								"http://example.com/father#stefan"));
-						posExamples.add(new Individual(
-								"http://example.com/father#markus"));
-						posExamples.add(new Individual(
-								"http://example.com/father#martin"));
-
-						//Step 2_2: subtract positive examples from all individuals of the ontology
-						//->negative examples of the concepts
-						SortedSet<Individual> negExamples = null;
-						negExamples = rs.getIndividuals();
-						for (Individual rem_pos : posExamples)
-							negExamples.remove(rem_pos);
-						System.out.println("+" + posExamples);
-						System.out.println("-" + negExamples);
-
-						//Step 3: Start learning-algorithm
-
-						// step 3_1: set learning problem
-						ComponentManager cm = ComponentManager.getInstance();
-
-						PosNegDefinitionLP lp = new PosNegDefinitionLP(rs,
-								posExamples, negExamples);
-
-						try {
-							initComponent(cm, lp);
-						} catch (ComponentInitException e1) {
-							// TODO Auto-generated catch block
-							e1.printStackTrace();
-						}
-
-						// step 3_2: set learning algorithm
-
-						la = new ROLearner(lp, rs);
-
-						try {
-							initComponent(cm, la);
-						} catch (ComponentInitException e) {
-							// TODO Auto-generated catch block
-							e.printStackTrace();
-						}
-
-						Thread laThread = new Thread()
-						{
-							@Override
-							public void run(){
-								la.start();
-							}
-						};
-						laThread.start();
-						
-						
-						System.out.println(la.getBestSolutions(5));
-
-						//Step 4: Knowledge Engineer chooses one of the suggestions
-
-						//Step 5: Enrichment
-
-						//Step 6: Repair:-check which individuals cause inconsistency
-						//               -problem solving
-
-					}
-				}
-			}
-
-		} while (!conceptStr.equals("q"));
-
-	}
-
-	/**
-	 * error handling over the logger
-	 * 
-	 * @param message
-	 *            is a string and you message for problem
-	 */
-	public static void handleError(String message) {
-		logger.error(message);
-		System.exit(0);
-	}
-
-	public ReasoningService getReasoningService() {
-		return rs;
-	}
-
-	// edit by Tilo Hielscher
-
-	/**
-	 * Set Reasoner class. Define here all possible reasoners.
-	 * 
-	 * @param reasonerOption
-	 *            from config file
-	 * @return reasonerClass reasoner class
-	 */
-	public static Class<? extends ReasonerComponent> getReasonerClass(
-			ConfFileOption reasonerOption) {
-		Class<? extends ReasonerComponent> reasonerClass = null;
-		if (reasonerOption == null
-				|| reasonerOption.getStringValue().equals("dig"))
-			reasonerClass = DIGReasoner.class;
-		else if (reasonerOption.getStringValue().equals("owlAPI"))
-			reasonerClass = OWLAPIReasoner.class;
-		else if (reasonerOption.getStringValue().equals("fastRetrieval"))
-			reasonerClass = FastRetrievalReasoner.class;
-		else if (reasonerOption.getStringValue().equals("fastInstanceChecker"))
-			reasonerClass = FastInstanceChecker.class;
-		else {
-			handleError("Unknown value " + reasonerOption.getStringValue()
-					+ " for option \"reasoner\".");
-		}
-		return reasonerClass;
-	}
-
-	public static Class<? extends LearningAlgorithm> getLearningAlgorithm(
-			ConfFileOption algorithmOption) {
-		Class<? extends LearningAlgorithm> laClass = null;
-		if (algorithmOption == null
-				|| algorithmOption.getStringValue().equals("refinement"))
-			laClass = ROLearner.class;
-		else if (algorithmOption.getStringValue().equals("refexamples"))
-			laClass = ExampleBasedROLComponent.class;
-		else if (algorithmOption.getStringValue().equals("gp"))
-			laClass = GP.class;
-		else if (algorithmOption.getStringValue().equals("bruteForce"))
-			laClass = BruteForceLearner.class;
-		else if (algorithmOption.getStringValue().equals("randomGuesser"))
-			laClass = RandomGuesser.class;
-		else
-			handleError("Unknown value in " + algorithmOption);
-
-		return laClass;
-	}
-
-}

Copied: trunk/src/dl-learner/org/dllearner/tools/ore/ORE_alt.java (from rev 721, trunk/src/dl-learner/org/dllearner/tools/ore/ORE.java)
===================================================================
--- trunk/src/dl-learner/org/dllearner/tools/ore/ORE_alt.java	                        (rev 0)
+++ trunk/src/dl-learner/org/dllearner/tools/ore/ORE_alt.java	2008-03-26 20:11:12 UTC (rev 728)
@@ -0,0 +1,619 @@
+/**
+ * Copyright (C) 2007-2008, Jens Lehmann
+ *
+ * This file is part of DL-Learner.
+ * 
+ * DL-Learner is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * DL-Learner is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ *
+ */
+package org.dllearner.tools.ore;
+
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.IOException;
+import java.io.InputStreamReader;
+import java.net.MalformedURLException;
+import java.net.URL;
+import java.util.HashMap;
+import java.util.HashSet;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+import java.util.SortedSet;
+import java.util.TreeSet;
+
+import org.apache.log4j.ConsoleAppender;
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
+import org.apache.log4j.SimpleLayout;
+import org.dllearner.algorithms.BruteForceLearner;
+import org.dllearner.algorithms.RandomGuesser;
+import org.dllearner.algorithms.gp.GP;
+import org.dllearner.algorithms.refexamples.ExampleBasedROLComponent;
+import org.dllearner.algorithms.refinement.ROLearner;
+import org.dllearner.cli.ConfFileOption;
+import org.dllearner.core.Component;
+import org.dllearner.core.ComponentInitException;
+import org.dllearner.core.ComponentManager;
+import org.dllearner.core.KnowledgeSource;
+import org.dllearner.core.LearningAlgorithm;
+import org.dllearner.core.ReasonerComponent;
+import org.dllearner.core.ReasoningService;
+import org.dllearner.core.config.BooleanConfigOption;
+import org.dllearner.core.config.ConfigEntry;
+import org.dllearner.core.config.ConfigOption;
+import org.dllearner.core.config.DoubleConfigOption;
+import org.dllearner.core.config.IntegerConfigOption;
+import org.dllearner.core.config.InvalidConfigOptionValueException;
+import org.dllearner.core.config.StringConfigOption;
+import org.dllearner.core.config.StringSetConfigOption;
+import org.dllearner.core.config.StringTupleListConfigOption;
+import org.dllearner.core.owl.Description;
+import org.dllearner.core.owl.Individual;
+import org.dllearner.core.owl.NamedClass;
+import org.dllearner.kb.KBFile;
+import org.dllearner.kb.OWLFile;
+import org.dllearner.kb.sparql.SparqlKnowledgeSource;
+import org.dllearner.learningproblems.PosNegDefinitionLP;
+import org.dllearner.parser.ConfParser;
+import org.dllearner.parser.KBParser;
+import org.dllearner.parser.ParseException;
+import org.dllearner.parser.TokenMgrError;
+import org.dllearner.reasoning.DIGReasoner;
+import org.dllearner.reasoning.FastInstanceChecker;
+import org.dllearner.reasoning.FastRetrievalReasoner;
+import org.dllearner.reasoning.OWLAPIReasoner;
+import org.dllearner.utilities.ConceptComparator;
+import org.dllearner.utilities.Datastructures;
+import org.dllearner.utilities.Helper;
+import org.dllearner.utilities.StringTuple;
+
+/**
+ * Start class for the ontology repair and enrichment tool.
+ * 
+ * @author Lorenz Buehmann.
+ *
+ */
+public class ORE_alt {
+
+	private static Logger logger = Logger.getRootLogger();
+
+	private static LearningAlgorithm la;
+	private ReasoningService rs;
+	private KnowledgeSource ks; 
+	
+	/**
+	 * Entry point for CLI interface.
+	 * 
+	 * @param args
+	 */
+	public static void main(String[] args) throws ComponentInitException {
+
+		File file = new File(args[args.length - 1]);
+
+		// create logger (a simple logger which outputs
+		// its messages to the console)
+		SimpleLayout layout = new SimpleLayout();
+		ConsoleAppender consoleAppender = new ConsoleAppender(layout);
+		logger.removeAllAppenders();
+		logger.addAppender(consoleAppender);
+		logger.setLevel(Level.DEBUG);
+
+		ORE_alt ore = null;
+		ore = new ORE_alt(file);
+		ore.start();
+	}
+
+	public ORE_alt(){
+		
+	}
+	
+	public void setKnowledgeSource(File file){
+		
+	}
+	
+	/**
+	 * Initialise all components based on conf file.
+	 * 
+	 * @param file
+	 *            Conf file to read.
+	 * @throws ComponentInitException
+	 */
+	public ORE_alt(File file) throws ComponentInitException {
+		String baseDir = file.getParentFile().getPath();
+
+		// create component manager instance
+		String message = "starting component manager ... ";
+		long cmStartTime = System.nanoTime();
+		ComponentManager cm = ComponentManager.getInstance();
+		long cmTime = System.nanoTime() - cmStartTime;
+		message += "OK (" + Helper.prettyPrintNanoSeconds(cmTime) + ")";
+		logger.info(message);
+
+		// create a mapping between components and prefixes in the conf file
+		Map<Class<? extends Component>, String> componentPrefixMapping = createComponentPrefixMapping();
+
+		// parse conf file
+		ConfParser parser = ConfParser.parseFile(file);
+
+		// step 1: detect knowledge sources
+		Set<KnowledgeSource> sources = new HashSet<KnowledgeSource>();
+		Map<URL, Class<? extends KnowledgeSource>> importedFiles = getImportedFiles(
+				parser, baseDir);
+		for (Map.Entry<URL, Class<? extends KnowledgeSource>> entry : importedFiles
+				.entrySet()) {
+			KnowledgeSource ks = cm.knowledgeSource(entry.getValue());
+			// apply URL entry (this assumes that every knowledge source has a
+			// configuration option "url"), so this may need to be changed in
+			// the
+			// future
+			cm.applyConfigEntry(ks, "url", entry.getKey().toString());
+
+			sources.add(ks);
+			configureComponent(cm, ks, componentPrefixMapping, parser);
+			initComponent(cm, ks);
+		}
+
+		// step 2: detect used reasoner
+		ConfFileOption reasonerOption = parser.getConfOptionsByName("reasoner");
+		ReasonerComponent reasoner = cm.reasoner(
+				getReasonerClass(reasonerOption), sources);
+		configureComponent(cm, reasoner, componentPrefixMapping, parser);
+		initComponent(cm, reasoner);
+		rs = cm.reasoningService(reasoner);
+
+	}
+
+	public void start() {
+		processOREMode(rs);
+
+	}
+
+	/**
+	 * creates a mapping from components to option prefix strings
+	 */
+	public static Map<Class<? extends Component>, String> createComponentPrefixMapping() {
+		Map<Class<? extends Component>, String> componentPrefixMapping = new HashMap<Class<? extends Component>, String>();
+		// knowledge sources
+		componentPrefixMapping.put(SparqlKnowledgeSource.class, "sparql");
+		// reasoners
+		componentPrefixMapping.put(DIGReasoner.class, "digReasoner");
+		componentPrefixMapping.put(OWLAPIReasoner.class, "owlAPIReasoner");
+		// learning problems - configured via + and - flags for examples
+		componentPrefixMapping.put(PosNegDefinitionLP.class,
+				"posNegDefinitionLP");
+		// learning algorithms
+		componentPrefixMapping.put(ROLearner.class, "refinement");
+		componentPrefixMapping.put(ExampleBasedROLComponent.class,
+				"refexamples");
+		componentPrefixMapping.put(GP.class, "gp");
+		return componentPrefixMapping;
+	}
+
+	/**
+	 * convenience method basically every prefix (e.g. "refinement" in
+	 * "refinement.horizontalExpFactor) corresponds to a specific component -
+	 * this way the CLI will automatically support any configuration options
+	 * supported by the component
+	 */
+	public static void configureComponent(ComponentManager cm,
+			Component component,
+			Map<Class<? extends Component>, String> componentPrefixMapping,
+			ConfParser parser) {
+		String prefix = componentPrefixMapping.get(component.getClass());
+		if (prefix != null)
+			configureComponent(cm, component, parser
+					.getConfOptionsByPrefix(prefix));
+	}
+
+	// convenience method - see above method
+	private static void configureComponent(ComponentManager cm,
+			Component component, List<ConfFileOption> options) {
+		if (options != null)
+			for (ConfFileOption option : options)
+				applyConfFileOption(cm, component, option);
+	}
+
+	// applies an option to a component - checks whether the option and its
+	// value is valid
+	private static void applyConfFileOption(ComponentManager cm,
+			Component component, ConfFileOption option) {
+		// the name of the option is suboption-part (the first part refers
+		// to its component)
+		String optionName = option.getSubOption();
+
+		ConfigOption<?> configOption = cm.getConfigOption(component.getClass(),
+				optionName);
+		// check whether such an option exists
+		if (configOption != null) {
+
+			// catch all invalid config options
+			try {
+
+				// perform compatibility checks
+				if (configOption instanceof StringConfigOption
+						&& option.isStringOption()) {
+
+					ConfigEntry<String> entry = new ConfigEntry<String>(
+							(StringConfigOption) configOption, option
+									.getStringValue());
+					cm.applyConfigEntry(component, entry);
+
+				} else if (configOption instanceof IntegerConfigOption
+						&& option.isIntegerOption()) {
+
+					ConfigEntry<Integer> entry = new ConfigEntry<Integer>(
+							(IntegerConfigOption) configOption, option
+									.getIntValue());
+					cm.applyConfigEntry(component, entry);
+
+				} else if (configOption instanceof DoubleConfigOption
+						&& (option.isIntegerOption() || option.isDoubleOption())) {
+
+					double value;
+					if (option.isIntegerOption())
+						value = option.getIntValue();
+					else
+						value = option.getDoubleValue();
+
+					ConfigEntry<Double> entry = new ConfigEntry<Double>(
+							(DoubleConfigOption) configOption, value);
+					cm.applyConfigEntry(component, entry);
+
+				} else if (configOption instanceof BooleanConfigOption
+						&& option.isStringOption()) {
+
+					ConfigEntry<Boolean> entry = new ConfigEntry<Boolean>(
+							(BooleanConfigOption) configOption, Datastructures
+									.strToBool(option.getStringValue()));
+					cm.applyConfigEntry(component, entry);
+
+				} else if (configOption instanceof StringSetConfigOption
+						&& option.isSetOption()) {
+
+					ConfigEntry<Set<String>> entry = new ConfigEntry<Set<String>>(
+							(StringSetConfigOption) configOption, option
+									.getSetValues());
+					cm.applyConfigEntry(component, entry);
+
+				} else if (configOption instanceof StringTupleListConfigOption
+						&& option.isListOption()) {
+
+					ConfigEntry<List<StringTuple>> entry = new ConfigEntry<List<StringTuple>>(
+							(StringTupleListConfigOption) configOption, option
+									.getListTuples());
+					cm.applyConfigEntry(component, entry);
+
+				} else {
+					handleError("The type of conf file entry \""
+							+ option.getFullName()
+							+ "\" is not correct: value \"" + option.getValue()
+							+ "\" not valid for option type \""
+							+ configOption.getClass().getName() + "\".");
+				}
+
+			} catch (InvalidConfigOptionValueException e) {
+				e.printStackTrace();
+				System.exit(0);
+			}
+
+		} else
+			handleError("Unknow option " + option + ".");
+	}
+
+	/**
+	 * detects all imported files and their format
+	 */
+	public static Map<URL, Class<? extends KnowledgeSource>> getImportedFiles(
+			ConfParser parser, String baseDir) {
+		List<List<String>> imports = parser.getFunctionCalls().get("import");
+		Map<URL, Class<? extends KnowledgeSource>> importedFiles = new HashMap<URL, Class<? extends KnowledgeSource>>();
+
+		if (imports != null) {
+			for (List<String> arguments : imports) {
+				// step 1: detect URL
+				URL url = null;
+				try {
+					String fileString = arguments.get(0);
+					if (fileString.startsWith("http:")) {
+						url = new URL(fileString);
+					} else {
+						File f = new File(baseDir, arguments.get(0));
+						url = f.toURI().toURL();
+					}
+				} catch (MalformedURLException e) {
+					e.printStackTrace();
+				}
+
+				// step 2: detect format
+				Class<? extends KnowledgeSource> ksClass;
+				if (arguments.size() == 1) {
+					String filename = url.getPath();
+					String ending = filename.substring(filename
+							.lastIndexOf(".") + 1);
+
+					if (ending.equals("rdf") || ending.equals("owl"))
+						ksClass = OWLFile.class;
+					else if (ending.equals("nt"))
+						ksClass = OWLFile.class;
+					else if (ending.equals("kb"))
+						ksClass = KBFile.class;
+					else {
+						System.err.println("Warning: no format given for "
+								+ arguments.get(0)
+								+ " and could not detect it. Chosing RDF/XML.");
+						ksClass = OWLFile.class;
+					}
+
+					importedFiles.put(url, ksClass);
+				} else {
+					String formatString = arguments.get(1);
+
+					if (formatString.equals("RDF/XML"))
+						ksClass = OWLFile.class;
+					else if (formatString.equals("KB"))
+						ksClass = KBFile.class;
+					else if (formatString.equals("SPARQL"))
+						ksClass = SparqlKnowledgeSource.class;
+					else if (formatString.equals("NT"))
+						ksClass = OWLFile.class;
+					else {
+						throw new RuntimeException(
+								"Unsupported knowledge source format "
+										+ formatString + ". Exiting.");
+					}
+
+					importedFiles.put(url, ksClass);
+				}
+			}
+		}
+
+		return importedFiles;
+	}
+
+	private static void initComponent(ComponentManager cm, Component component)
+			throws ComponentInitException {
+		String startMessage = "initialising component \""
+				+ cm.getComponentName(component.getClass()) + "\" ... ";
+		long initStartTime = System.nanoTime();
+		component.init();
+		// standard messsage is just "OK" but ca...
 
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