UpdateHistory

Version - detectMITE.20170425.tar.gz | April 25th 2017

-fixed: minor bug fixed.

Version - detectMITE.20170331.tar.gz | March 31st 2017

-fixed: fixing the bug of producing error when no candidate MITE was found.

Version - detectMITE.20160818.tar.gz | August 18th 2016

-fixed: fixing some small bugs.

Version - detectMITE.20160128.tar.gz | January 28th 2016

-Added: Using a function 'fastaread2.m', which was developed by vitorpiro@gmail.com, to replace the built-in function 'fastaread.m' and some small revision to reduce the memory consumption.

-Modified: Modifying the output format of detectMITE. Original chromosome (or sequence) number was changed into chromosome (or sequence) name, and TIR length annotation was added in the description line of the fasta format output.

For example,
New description line of each MITE sequence (e.g., >chr06|2367817|2367964|10|2) has the following explanation:
>ChromosomeName|GenomicStartPosition|GenomicStopPosition|TIR_Length|TSD_Length.
New description line of representative sequence of each MITE family (e.g., >chr06|2367817|2367964|10|2|109) has the following explanation:
>ChromosomeName|GenomicStartPosition|GenomicStopPosition|TIR_Length|TSD_Length|CopyNumber.

Version - detectMITE.20150603.7z | June 3rd 2015

First version release.