Hi, I'm getting some confused errors when running
I used the command $nohup matlab < Test_Demo.m > output.txt &
and the following details show the contents of the output
>> >> >> >> >> >> >> Starting parallel pool (parpool) using the 'local' profile ... connected to 30 workers.
================================================================
Program: CD-HIT, V4.8.1 (+OpenMP), Mar 22 2022, 20:03:24
Command: ./cd-hit/cd-hit-est -i
./result/prunus.candidateTE1.fasta -o
./result/prunus.clusteredCandidateTE1.fasta -c 0.80 -n
5 -d 0 -T 0 -aL 0.99 -s 0.8 -M 0
Started: Thu Apr 14 21:54:31 2022
================================================================
Output
----------------------------------------------------------------
total number of CPUs in the system is 144
Actual number of CPUs to be used: 144
total seq: 72724
longest and shortest : 149 and 50
Total letters: 6985729
Sequences have been sorted
Approximated minimal memory consumption:
Sequence : 16M
Buffer : 144 X 12M = 1864M
Table : 2 X 1M = 2M
Miscellaneous : 0M
Total : 1884M
Table limit with the given memory limit:
Max number of representatives: 180555
Max number of word counting entries: 4675237
# comparing sequences from 0 to 3995
...---------- new table with 2706 representatives
# comparing sequences from 3995 to 4465
....................
---------- 332 remaining sequences to the next cycle
---------- new table with 100 representatives
(……)
# comparing sequences from 46583 to 46589
.....---------- new table with 5 representatives
# comparing sequences from 46589 to 46595
....
98.1%
98.2%
98.5%
98.7%
99.0%
99.1%
99.3%
99.5%
99.8%
99.9%---------- new table with 4 representatives
# comparing sequences from 46595 to 47593
..................---------- new table with 797 representatives
47593 finished 32366 clusters
Approximated maximum memory consumption: 1854M
writing new database
writing clustering information
program completed !
Total CPU time 3772.57
This similar process was performed 16 times
Finally, I got this below
Starting parallel pool (parpool) using the 'local' profile ... connected to 12 workers.
IdleTimeout has been reached.
Parallel pool using the 'local' profile is shutting down.
Parallel pool using the 'local' profile is shutting down.
>> >> >> >> >> >> >>
In the working path where I ran detectmite, the file prunus.mite.fasta and prunus.miteSet.fasta appeared ( since I set genome to prunus )
What confused me was that I didn't know if the program ended smoothly or aborted with an error
To prevent me from having unclear expressions, I uploaded my output.txt