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#4 error when running

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nobody
None
2022-04-22
2022-04-22
Auriel Xue
No

Hi, I'm getting some confused errors when running
I used the command $nohup matlab < Test_Demo.m > output.txt &
and the following details show the contents of the output

>> >> >> >> >> >> >> Starting parallel pool (parpool) using the 'local' profile ... connected to 30 workers.
================================================================
Program: CD-HIT, V4.8.1 (+OpenMP), Mar 22 2022, 20:03:24
Command: ./cd-hit/cd-hit-est -i
         ./result/prunus.candidateTE1.fasta -o
         ./result/prunus.clusteredCandidateTE1.fasta -c 0.80 -n
         5 -d 0 -T 0 -aL 0.99 -s 0.8 -M 0

Started: Thu Apr 14 21:54:31 2022
================================================================
                            Output                              
----------------------------------------------------------------
total number of CPUs in the system is 144
Actual number of CPUs to be used: 144

total seq: 72724
longest and shortest : 149 and 50
Total letters: 6985729
Sequences have been sorted

Approximated minimal memory consumption:
Sequence        : 16M
Buffer          : 144 X 12M = 1864M
Table           : 2 X 1M = 2M
Miscellaneous   : 0M
Total           : 1884M

Table limit with the given memory limit:
Max number of representatives: 180555
Max number of word counting entries: 4675237

# comparing sequences from          0  to       3995
...---------- new table with     2706 representatives

# comparing sequences from       3995  to       4465
....................
----------    332 remaining sequences to the next cycle
---------- new table with      100 representatives

(……)

# comparing sequences from      46583  to      46589
.....---------- new table with        5 representatives

# comparing sequences from      46589  to      46595
....
98.1%
98.2%
98.5%
98.7%
99.0%
99.1%
99.3%
99.5%
99.8%
99.9%---------- new table with        4 representatives

# comparing sequences from      46595  to      47593
..................---------- new table with      797 representatives

    47593  finished      32366  clusters
Approximated maximum memory consumption: 1854M
writing new database
writing clustering information
program completed !

Total CPU time 3772.57

This similar process was performed 16 times

Finally, I got this below

Starting parallel pool (parpool) using the 'local' profile ... connected to 12 workers.
IdleTimeout has been reached.
Parallel pool using the 'local' profile is shutting down.
Parallel pool using the 'local' profile is shutting down.
>> >> >> >> >> >> >> 

In the working path where I ran detectmite, the file prunus.mite.fasta and prunus.miteSet.fasta appeared ( since I set genome to prunus )
What confused me was that I didn't know if the program ended smoothly or aborted with an error

To prevent me from having unclear expressions, I uploaded my output.txt

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