DeNovoGear is a program to detect denovo mutations using sequencing data.
The methods behind DeNovoGear are described in this publication,
http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html

The production version of the code(updated more frequently) can be found here,
https://github.com/denovogear/denovogear

The releases of major and minor versions of the code are this Sourceforge page.

Features

  • Detect denovo point mutations amongst trios.
  • Detect denovo indels amongst trios.
  • Detect variation amongst paired samples.
  • Parental phasing of mutations.

Project Samples

Denovo insertion in a trio called with DeNovoGear. Denovo deletion in a trio called with DeNovoGear. Paired sample denovo call made with DeNovoGear. Denovo SNP in a trio called with DeNovoGear.

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  • ashleydean Posted 2013-06-08
    Thanks for Denovogear, it's wonderful!
    1 user found this review helpful.
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Registered

2011-07-11
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