I am wondering with I could use your deFuse software with RNAseq data coming from mm9 genome experiment. I downloaded the program, the external programs, config all and when I use the the create_reference_dataset script, I found that only use hg19 or hg18 genome. Could I modify the code to download the mm9 data? Even if it works, could deFuse works with this genome or it is only designed to work wiht Human?
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Yes, this is possible, I have successfully analyzed a few mouse libraries with defuse.
Unfortunately create_reference_dataset.pl doenst work for mm9 out of the box. Attached is a modified version that worked for me, and an attached config.txt.
I am wondering with I could use your deFuse software with RNAseq data coming from mm9 genome experiment. I downloaded the program, the external programs, config all and when I use the the create_reference_dataset script, I found that only use hg19 or hg18 genome. Could I modify the code to download the mm9 data? Even if it works, could deFuse works with this genome or it is only designed to work wiht Human?
Yes, this is possible, I have successfully analyzed a few mouse libraries with defuse.
Unfortunately create_reference_dataset.pl doenst work for mm9 out of the box. Attached is a modified version that worked for me, and an attached config.txt.