CWC Simulator

This is an implementation of CWC (Calculus of Wrapped Compartments), a rewriting-based calculus for the representation and simulation of biological systems.

Features

Gillespie-like simulations over CWC models
Hybrid stochastic/deterministic semantics
Dynamic cutoff-based semantical reconfiguration
Multiple rating functions (mass action, Michaelis-Menten, Hill)
Multiple instances of simulation
Online statistics (mean and variance under Grubb's test, quantiles, clustering)
Optimization for multi-core based on FastFlow framework
Both shared-memory and distributed versions

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