Manuel Rodríguez-Pascual - 2014-03-08

Hi all,

I am getting a strange error when executing Science Gateway. From a couple of days ago, it has "borken" and does not allow me to sumbit anything. I don't think I have changed anything, so it's difficult to trace the error.

[#|2014-03-08T21:14:40.743+0000|INFO|glassfish3.1.2|javax.enterprise.system.std.com.sun.enterprise.server.logging|_ThreadID=204;_ThreadName=Thread-2;|2014-03-08 21:14:40 [pool-15-thread-18] INFO RobotProxy - get proxy: http://etokenserver.ct.infn.it:8082/eTokenServer/eToken/332576f78a4fe70a52048043e90cd11f?voms=gridit:gridit&proxy-renewal=true
|#]
[#|2014-03-08T21:14:44.460+0000|INFO|glassfish3.1.2|javax.enterprise.system.std.com.sun.enterprise.server.logging|_ThreadID=204;_ThreadName=Thread-2;|2014-03-08 21:14:44 [pool-15-thread-18] INFO JobServicesDispatcher - Creating a new Session...
|#]
[#|2014-03-08T21:14:44.461+0000|INFO|glassfish3.1.2|javax.enterprise.system.std.com.sun.enterprise.server.logging|_ThreadID=204;_ThreadName=Thread-2;|2014-03-08 21:14:44 [pool-15-thread-18] INFO JobServicesDispatcher - UrlPrefix
|#]
[#|2014-03-08T21:14:44.462+0000|INFO|glassfish3.1.2|javax.enterprise.system.std.com.sun.enterprise.server.logging|_ThreadID=204;_ThreadName=Thread-2;|2014-03-08 21:14:44 [pool-15-thread-18] INFO JobServicesDispatcher - getMyproxyServerForVO=gridit
|#]
[#|2014-03-08T21:14:44.464+0000|INFO|glassfish3.1.2|javax.enterprise.system.std.com.sun.enterprise.server.logging|_ThreadID=204;_ThreadName=Thread-2;|2014-03-08 21:14:44 [pool-15-thread-18] INFO JobServicesDispatcher - myproxyserver=myproxy.ct.infn.it
|#]
[#|2014-03-08T21:14:44.467+0000|INFO|glassfish3.1.2|javax.enterprise.system.std.com.sun.enterprise.server.logging|_ThreadID=204;_ThreadName=Thread-2;|2014-03-08 21:14:44 [pool-15-thread-18] ERROR JobServicesDispatcher - Error in reading user proxy...
|#]
[#|2014-03-08T21:14:44.467+0000|INFO|glassfish3.1.2|javax.enterprise.system.std.com.sun.enterprise.server.logging|_ThreadID=204;_ThreadName=Thread-2;|2014-03-08 21:14:44 [pool-15-thread-18] ERROR JobServicesDispatcher - NoSuccess: IncorrectState: Security context is not of type: VOMS
|#]
[#|2014-03-08T21:14:44.468+0000|INFO|glassfish3.1.2|javax.enterprise.system.std.com.sun.enterprise.server.logging|_ThreadID=204;_ThreadName=Thread-2;|2014-03-08 21:14:44 [pool-15-thread-18] ERROR JobServicesDispatcher - Cause :IncorrectState: Security context is not of type: VOMS
|#]
[#|2014-03-08T21:14:44.468+0000|INFO|glassfish3.1.2|javax.enterprise.system.std.com.sun.enterprise.server.logging|_ThreadID=204;_ThreadName=Thread-2;|2014-03-08 21:14:44 [pool-15-thread-18] ERROR JobServicesDispatcher - Error in reading user proxy...
|#]
[#|2014-03-08T21:14:44.468+0000|INFO|glassfish3.1.2|javax.enterprise.system.std.com.sun.enterprise.server.logging|_ThreadID=204;_ThreadName=Thread-2;|2014-03-08 21:14:44 [pool-15-thread-18] ERROR JobServicesDispatcher - java.lang.NullPointerException
|#]
[#|2014-03-08T21:14:44.468+0000|INFO|glassfish3.1.2|javax.enterprise.system.std.com.sun.enterprise.server.logging|_ThreadID=204;_ThreadName=Thread-2;|2014-03-08 21:14:44 [pool-15-thread-18] ERROR JobServicesDispatcher - Cause :null
|#]

[#|2014-03-08T21:14:44.468+0000|INFO|glassfish3.1.2|javax.enterprise.system.std.com.sun.enterprise.server.logging|_ThreadID=204;_ThreadName=Thread-2;|2014-03-08 21:14:44 [pool-15-thread-18] DEBUG JSagaJobSubmission - Cannot submit job: GEJobDescription [id=7, executable=/usr/bin/env, arguments=sh Molon.sh PID SO3, output=molon-Output.txt, error=molon-Error.txt], deleteting descrisption if exits.

Just in case, these are the libraries I am employing. I think they are the newest ones

activation-1.1.jar jsaga-adaptor-srm-0.9.16-SNAPSHOT.jar
addressing-1.0-1.0.jar jsaga-adaptor-ssh-0.9.16-SNAPSHOT.jar
ant-1.5.jar jsaga-adaptor-ssh2-0.9.16-SNAPSHOT.jar
antlr-2.7.6.jar jsaga-adaptor-unicore-0.9.16-SNAPSHOT.jar
apache-commons-net.jar jsaga-adaptor-voms-0.9.16-SNAPSHOT.jar
applibs jsaga-adaptor-wms-0.9.16-SNAPSHOT.jar
avalon-framework-4.1.3.jar jsaga-adaptor-wsgram-0.9.16-SNAPSHOT.jar
axis-1.4-patched.jar jsaga-engine-0.9.16-SNAPSHOT.jar
axis-jaxrpc-1.4.jar jsaga-installer-0.9.16-SNAPSHOT.jar
axis-saaj-1.4.jar jsaga-job-management-1.5.8.jar
axis-wsdl4j-1.5.1.jar jsaga-job-management.jar
bcpg-1.37.0.jar jsch-0.1.45.jar
bcpg-jdk14-1.46.jar jsdl-xmlbeans-2.0.2.jar
bcprov-jdk14-140.jar jta-1.1.jar
castor-1.0-xml.jar jtds.jar
classad-2.4.jar junit-3.8.2.jar
classes jzlib-1.0.7.jar
cog-axis-gt4.jar libdbus-java-2.7.jar
cog-jglobus-1.8.jar libfile-system-linux-1.0.so
cog-url-1.4.jar log4j-1.2.16.jar
commonj-4.0.0.jar logkit-1.0.1.jar
commons-attributes-api-2.1.jar mail-1.4.jar
commons-beanutils-1.6.jar metrix-0.5.jar
commons-cli-1.1.jar mysql-connector-java-5.1.13.jar
commons-codec-1.6.jar mysql-connector-java-5.1.22-bin.jar
commons-collections-3.0.jar mysql.jar
commons-collections-3.1.jar naming-core-0.8.jar
commons-digester-1.5.jar naming-factory-0.8.jar
commons-discovery-0.2.jar naming-java-0.8.jar
commons-fileupload-1.2.2.jar naregi-ss-api-beta-2.jar
commons-httpclient-3.1.jar opensaml-4.0.0.jar
commons-io-2.0.1.jar org.apache.commons.codec-1.6.jar
commons-lang-2.3.jar persistence-0.18.jar
commons-logging-1.1.jar picocontainer-2.8.jar
concurrent-4.0.0.jar portal-service.jar
crl-checking-1.4.jar portlet.jar
cryptix32-3.2.0.jar postgresql.jar
cryptix-asn1-3.2.0.jar puretls-0.9-beta-4.jar
databases qdox-1.5.jar
dom4j-1.6.1.jar saga-api-1.1.1.jar
ext saga-api-test-0.9.16-SNAPSHOT.jar
file-system-all-1.0.pom SAMLtypes-1.2.jar
file-system-java-1.0.jar samly2-1.3.5.jar
ganymed-ssh-2-260.jar saxon-9.1.0.8.jar
glite-ce-cream-api-java-1.11.0.jar saxon-dom-9.1.0.8.jar
glite-ce-delegation-unknown.jar saxon-xpath-9.1.0.8.jar
glite.dm-0.5.3.jar scala-library-2.9.2.jar
glite-jdl-api-java-3.1.6.jar secret-service-api-java-0.2.jar
glite-lb-api-java-3.2-p1.jar securityLibrary-2.0.5.jar
glite-security-authz-framework-java-1.3.11.jar secutils-xfire-1.0.6.jar
glite-security-delegation-java-1.4.4.jar serializer-2.7.1.jar
glite-security-delegation-service-java-1.2.1.jar servlet-api-2.5-20081211.jar
glite-security-trustmanager-1.8.16.jar servlet-api-2.5.jar
glite-security-util-java-1.4.0.jar slf4j-api-1.6.1.jar
glite-wms-wmproxy-api-java-3.3.2.jar slf4j-log4j12-1.6.1.jar
gridengine-threadpools-1.0.0.jar spring-asm-3.0.5.RELEASE.jar
gridengine-threadpools.jar spring-core-3.0.5.RELEASE.jar
groovy-all-1.7.6.jar spring-expression-3.0.5.RELEASE.jar
guava-13.0.1.jar stax-api-1.0.jar
h2-1.2.147.jar stax-utils-20040917.jar
hazelcast-1.9.1.jar sunxacml-1.2.jar
herasaf-xacml-core-1.0.0-M2.jar uas-client-1.4.2.jar
hibernate3.jar uas-core-1.4.2-p2.jar
hibernate-jpa-2.0-api-1.0.1.Final.jar uas-types-1.4.2.jar
hsql.jar use-aip-2.0.2.jar
httpclient-4.2.1.jar use-core-2.0.2.jar
httpcore-4.2.1.jar use-pdp-2.0.2.jar
httpmime-4.2.1.jar use-wsrfclient-2.0.2.jar
jargon-2.5.jar use-wsrflite-2.0.2.jar
javassist-3.12.0.GA.jar use-wsrftypes-2.0.2.jar
jaxen-1.1-beta-9.jar uvos-client-1.4.1.jar
jdom-1.0.jar uvos-common-1.4.1.jar
jersey-client-1.8.jar vomsjapi-1.7.22.jar
jersey-core-1.8.jar wsdl4j-1.6.1.jar
jetty-6.1.26.jar wsgram-api-4.0.0.jar
jetty-sslengine-6.1.26.jar wss4j-1.5.12.jar
jetty-util-6.1.26.jar wstx-asl-3.2.4.jar
jline-0.9.94.jar xalan-2.7.1.jar
jsaga-adaptor-arc-0.9.16-SNAPSHOT.jar xercesImpl-2.6.2.jar
jsaga-adaptor-batchssh-0.9.16-SNAPSHOT.jar xfire-aegis-1.2.6.jar
jsaga-adaptor-bes-0.9.16-SNAPSHOT.jar xfire-annotations-1.2.6.jar
jsaga-adaptor-bes-genesis2-0.9.16-SNAPSHOT.jar xfire-core-1.2.6.jar
jsaga-adaptor-bes-unicore6-0.9.16-SNAPSHOT.jar xfire-java5-1.2.6.jar
jsaga-adaptor-classic-0.9.16-SNAPSHOT.jar xfire-jsr181-api-1.0-M1.jar
jsaga-adaptor-cream-0.9.16-SNAPSHOT.jar xfire-voutils-1.4.0.jar
jsaga-adaptor-globus-0.9.16-SNAPSHOT.jar xfire-xmlbeans-1.2.6.jar
jsaga-adaptor-irods-0.9.16-SNAPSHOT.jar xml-apis-1.3.04.jar
jsaga-adaptoritf-0.9.16-SNAPSHOT.jar xmlbeans-2.4.0.jar
jsaga-adaptor-lfc-0.9.16-SNAPSHOT.jar xmlbeans-xpath-2.4.0.jar
jsaga-adaptor-linux-0.9.16-SNAPSHOT.jar xmlParserAPIs-2.6.2.jar
jsaga-adaptor-mail-0.9.16-SNAPSHOT.jar XmlSchema-1.1.jar
jsaga-adaptor-naregi-0.9.16-SNAPSHOT.jar xmlsec-1.4.5.jar
jsaga-adaptor-ourgrid-0.9.16-SNAPSHOT.jar xnjs-module-core-1.5.1.jar
jsaga-adaptor-rocci.jar xuudb-common-1.3.2-rc1.jar
jsaga-adaptor-secretservice-0.9.16-SNAPSHOT.jar

My certificates in /etc/grid-security have been updated just now following the instructions in http://gilda.ct.infn.it/wikimain?p_p_id=54_INSTANCE_t9W0&p_p_lifecycle=0&p_p_state=normal&p_p_mode=view&p_p_col_id=column-2&p_p_col_count=1&_54_INSTANCE_t9W0_struts_action=%2Fwiki_display%2Fview&_54_INSTANCE_t9W0_nodeName=Main&_54_INSTANCE_t9W0_title=DevelopmentEnvironment .

Any idea on this? What is the security context? should I configure it anywhere?