| 431 |
Cascade search file column bug |
post v2.0 |
open |
|
2016-09-14
|
2016-09-14
|
|
|
| 429 |
Percolator does not report all of the PSMs |
Crux v2.0 |
open |
Kaipo
|
2016-09-03
|
2016-09-07
|
High priority |
|
| 428 |
list-of-files does not work for assign-confidence |
Crux v2.0 |
open |
Kaipo
|
2016-09-02
|
2016-09-02
|
|
|
| 426 |
Create smoke tests for cascade-search |
Crux v2.0 |
open |
Alice Cheng
|
2016-08-10
|
2016-08-10
|
High priority |
|
| 425 |
Update txt-format table |
Crux v2.0 |
open |
William S Noble
|
2016-08-09
|
2016-08-09
|
|
|
| 424 |
Fix handling of mods in tide-index |
Crux v2.0 |
open |
Kaipo
|
2016-08-09
|
2016-08-09
|
|
|
| 419 |
Add to developers doc a page describing how to track Crux usage |
Crux v2.0 |
open |
Kaipo
|
2016-08-03
|
2016-08-03
|
High priority |
|
| 418 |
search-for-xlinks allows multiple variable mods on a single amino acid |
Crux v2.0 |
open |
sjoemac
|
2016-08-03
|
2016-08-03
|
|
|
| 417 |
search-for-xlinks does not handle ties properly in computing delta_cn |
Crux v2.0 |
open |
sjoemac
|
2016-08-02
|
2016-08-02
|
|
|
| 413 |
Percolator seg fault during final conversion |
Crux v2.0 |
open |
Kaipo
|
2016-07-18
|
2016-07-18
|
Percolator, High priority |
|
| 412 |
Enable pepXML output from search-for-xlinks |
post v2.0 |
open |
Kaipo
|
2016-07-12
|
2016-07-12
|
|
|
| 409 |
Automatically track mapping of parameters to commands |
post v2.0 |
open |
Kaipo
|
2016-07-02
|
2016-07-02
|
|
|
| 408 |
Handle missing input columns in assign-confidence |
post v2.0 |
open |
Kaipo
|
2016-07-02
|
2016-07-02
|
|
|
| 407 |
Implement e-mix-max in assign-confidence |
post v2.0 |
open |
Kaipo
|
2016-07-02
|
2016-07-02
|
|
|
| 406 |
Allow tide-index to handle selenocysteine |
post v2.0 |
open |
Kaipo
|
2016-07-02
|
2016-07-02
|
|
|
| 405 |
Add PEFF support to tide-index |
post v2.0 |
open |
Kaipo
|
2016-06-29
|
2016-06-29
|
|
|
| 404 |
Create memory and speed tests for Barista |
post v2.0 |
open |
Kaipo
|
2016-06-29
|
2016-06-29
|
|
|
| 403 |
Add --require-xlink-candidate flag to search-for-xlinks |
post v2.0 |
pending |
sjoemac
|
2016-06-24
|
2016-07-24
|
|
|
| 400 |
tide-search fails to parse MGF file (in search-for-xlinks branch) |
post v2.0 |
open |
Kaipo
|
2016-06-22
|
2016-09-07
|
|
|
| 399 |
Seg fault from make-pin |
Crux v2.0 |
open |
Kaipo
|
2016-06-21
|
2016-06-22
|
High priority |
|
| 398 |
Add documentation for allow-duplicates flag to tide-index |
post v2.0 |
open |
Zijin Zhang
|
2016-06-17
|
2016-07-17
|
|
|
| 397 |
Once lint errors are removed, add readability/casting test back in and fix errors |
post v2.0 |
open |
Kaipo
|
2016-06-03
|
2016-06-03
|
|
|
| 395 |
Fix lint test errors in app and util directories |
post v2.0 |
open |
Kaipo
|
2016-06-03
|
2016-06-03
|
|
|
| 394 |
Fix lint test errors in model directory |
post v2.0 |
open |
Charles E. Grant
|
2016-06-03
|
2016-06-03
|
|
|
| 393 |
Fix lint test errors in io directory |
post v2.0 |
open |
Alice Cheng
|
2016-06-03
|
2016-08-11
|
|
|
