Activity for Crux-Toolkit
-
Charles E. Grant committed [r17190]
Changed home page to redirect to new site
-
Andy Lin committed [r17189]
Last commit before transfer from svn to git. Fi...
-
Prelim commit after merging from trunk. Incopor...
-
Kaipo committed [r17187]
remove lexical cast dependency from stringutils
-
update percolator test for new columns
-
Matthew The committed [r17185]
Added simple percolator smoke test. Code review...
-
update smoke tests for removing original-output...
-
William S Noble committed [r17183]
Summary: Some minor edits to txt-format.html.
-
Patch percolator to use its native output
-
Alice Cheng committed [r17181]
Added cucumber tests for cascade search
-
Cascade search file column bug
-
fix typo
-
When constructing the stand-alone percolator co...
-
Added note that current build of Crux for OS X ...
-
Thanks Bill, it is committed (r17177)
-
Fix Percolator output columns
-
Add percolator pep column and fix name of match...
-
This looks good. All tests pass, and it seems to work well. Please check it in. On...
-
Here is a patch to fix these two issues.
-
Added missing good results file for isotope error
-
I have also verified that Percolator yields about 5-fold more PSMs using the latest...
-
Just to confirm what we discussed in person, yes, you should use two different feature...
-
Added Isotope Error
-
tide-search fails to parse MGF file (in search-for-xlinks branch)
-
Remove some unused tide code
-
For (1), what happens is that when we convert to pin, both distinct matches/spectrum...
-
I think the version is different for the binary - I get the same results (26,342...
-
Fix Percolator output columns
-
Percolator does not report all of the PSMs
-
Update test results for percolator 3.00
-
fix build for updated protocol buffers on windows
-
Merge from trunk to res-ev
-
list-of-files does not work for assign-confidence
-
Summary: Fix minor mistake in parameter descrip...
-
Fixed some bugs in performance-tests. All plots...
-
committed in r17168
-
Upgrade to Percolator 3.0
-
Update percolator to 3.00
-
Yuval Boss committed [r17167]
Fixed global fonts
-
Add nobullet class to li elements in CreateDocs
-
Rename required argument for Percolator from 'p...
-
Fixed parsing of version numbers for downloadin...
-
Updated links to static Pwiz tarball and Google...
-
Several small fixes, including adding a new std...
-
Did a merge with crux trunk
-
Started prepping code for score-function=BOTH. ...
-
Updated build to use Google gflags 2.1.2 downlo...
-
Added gnutar requirement for OS X source build
-
Finished coding up adding amino acid frequencie...
-
started writing code for creating the residue e...
-
Redid how Crux reads in the 'score-function' pa...
-
Edited objects.h to add a scorer type for resid...
-
Update to performance test on res-ev branch. No...
-
Finished coding residue evidence when exact-p-v...
-
Updated performance tests to include residue-ev...
-
sjoemac committed [r17150]
Some optimizations in the xcorr correlation fxn
-
Half-fix to make mods only occur once on a sing...
-
Did a merge with crux trunk. No merge conflicts.
-
Deleting some items not under version control t...
-
Minor spacing edits
-
Just fixed and put into the trunk all the lint errors except 1: ../../src/io/SQTWriter.cpp:61:...
-
Updated io files to adhere to lint tests. Code ...
-
Threading bug in cascade-search?
-
Fixed cascade-search lock bug. See issue #427.
-
Yes, I have verified that (1) my test now runs to completion, (2) it get the same...
-
Added Python script to summarize data in downlo...
-
IT WORKS. Found a difference in TideSearchAppli...
-
IT WORKS. I think my merge with TideSearchAppli...
-
Just figured out what was going on. It was a lock problem. There's a if () { continue;...
-
One of the cmd options you specified is --num-threads 1, so there shouldn't be any...
-
Threading bug in cascade-search?
-
Still getting back to normal after things went ...
-
Things went weird again....lost some code. So r...
-
Proteowizard seems to have removed Clearcore2.P...
-
Did a merge with crux trunk and everything went...
-
Create smoke tests for cascade-search
-
Minor updates to cascade-search documentation.
-
Added instructions for backing up Crux SVN repo...
-
Continued pulling out duplicate code in case=RE...
-
Added README describing download logging process.
-
Added log file of distribution downloads
-
Fixed path to demo data
-
Summary: Fix the descriptions of delta_cn and d...
-
Fix typo in modifications column header. Update...
-
Update txt-format table
-
Summary: Update release notes re: cpos change.
-
Fix c-neg documentation
-
Fix handling of mods in tide-index
-
I will try doing this now.
-
Upgrade to Percolator 3.0
-
Started writing code for score-function=residue...
-
By default do not set cneg or cpos for Percolator
-
Fix for c-pos and c-neg params
-
By default do not set cneg or cpos for Percolator
-
This is a slightly edited version of the patch that Kaipo sent me. Kaipo, if this...
-
Upgrade to Percolator 2.10
-
seg fault from tide-index in performance test
-
Never mind this. I couldn't reproduce it. It seems to have been a product of an incomplete...
-
Just ran performance tests on my mac and linux. Logs are attached below. Linux does...
-
seg fault from tide-index in performance test
1 >