Working LocalSLURM Sheperd
Vagrant - use 2.2.0 db create script
Fix RemoteSGE log message typo
Patch Tandem2XML to pull scan nums from name.start.end.charge format descr
Tidy Makefile.PL
LocalSLURM sheperd
Strip RTINSECONDS=99.99 from Tandem output
Add Local/RemoteSLURM notes to INSTALL(.pod)
Vagrant - set 'sql-mode=' in my.cnf
Vagrant - install NCBI Blast+
Make TTP-5.1.0 patches apply on generic system
Missing : on FindBin::lib
Missing : on FindBin::lib
Merge branch 'utsw-biohpc' of https://github.com/dctrud/cpfp into utsw-biohpc
Merge remote-tracking branch 'dct/utsw-biohpc' into utsw-biohpc
Vagrant - drop hyper-v config, too many issues
Merge branch 'utsw-biohpc' of ssh://git.code.sf.net/p/cpfp/code into utsw-biohpc
Bump version to 2.2.0 as we have changed much
Bump version to 2.2.0 as we have changed much
MSGFPlus -m for HCD<->ETD has swapped 2<->3
Install FindBin::lib from cpan for TPP 5.1.0
Changes to TPP calls for TPP 5.1.0
Missing sdb_is_active in create_2.1.2.sql
Vagrant - need libpng12-devel
Patch TPP 5.1.0 CProteinAmbiguityGroup.cpp to compile on EL 7
More logging in Makefile.PL
Vagrant - enable hyperv provider
Vagrant - config file and default password file
Vagrant provision DB and conf file
Vagrant - smb file share for hyperv
Net::LDAP is a dependency
Vagrant use centos/7 official with 2GB RAM
Vagrant dev server port is 3000 not 8000
Vagrant dev server port is 3000 not 8000
Vagrant - smb file share for hyperv
Vagrant - config file and default password file
Net::LDAP is a dependency
Vagrant - enable hyperv provider
Vagrant provision DB and conf file
Vagrant use centos/7 official with 2GB RAM
Ensure vagrant provision succeeds on non-biohpc machines
Ignore .vagrant directory
More vagrant OS deps, and mysql password that fits requirements
Separate old 4.6.3 and new 5.1.0 tpp patches
Makefile.PL - update extern downloads. Fixes.
Add basic vagrant setup
.gitignore for Jetbrains .idea dir
Output errors from install steps properly
Disable Myrimatch for now... old URI is bad
Whoops - fix command exit code check
Modify POSTing of data by Mascot plugin to the ...
Allow administrator users to grant submission a...
Fix ModLS bug when including terminal modificat...
Refactor javascript file uploader to clean up c...
Fixes to LDAP username lookup to handle large n...
Merge branch 'oxford'
Fix running SINQ Task via CLI if {CPFP_THREADS}...
Schema update to v2.1.2; Add support for flaggi...
Remove unused variable and fix comments printi...
Add some handling for edge-case scenarios where...
Merge branch 'oxford'
Bugfix add_public_database script to correctly ...
Disordered list in db search submission
Immediate issue has not cropped up again, but a TITLE uniqueness validator remains...
Discrepancy in search results if line endings are different
Mascot Instrument Config
Concur. Issue not reported for a few months now.
SINQ Export to Excel Issues
Export mzIdentML
Some issues remain for generating strictly valid markup (a problem for PRIDE submissions...
Bugfixes for mzIdentML generator. Markup produ...
Add .snapshot backup dirs to gitignore
Tweak the submission search box to enable searc...
Fix for timeout in very large Excel files (::Di...
Bugfix for blank ProteinCenter protein results ...
Merge branch 'utsw' into oxford
Added extension filter to upload.tt2 as FireFox...
Merge branch 'utsw'
Remove completed work package directories to li...
RemoteSLURM scheduler - now working with TACC S...
Updating README
Merge branch 'utsw'
WIP: RemoteSLURM Shepherd to use TACC Stampede ...
Fix INSTALL text about creating main cpfp.conf ...
Ugly fix for Carp::Heavy site/local version mis...
Merge branch 'utsw' of proteomics-srv-01.swmed....
