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COV2HTML provides an easy and 'in home' web interface for biologists that allows coverage visualization of the NGS alignment needed for the analysis. It combines two essential processes: (i) MAP2COV, a tool that converts the huge NGS mapping or coverage files into light specific coverage files which contains genetic elements informations. (ii) COV2HTML, a visualization interface allowing a real-time analysis of data with selected criteria. Thus this interface offers a visualization of NGS mapping coverage data (DNA-seq, RNA-seq, ChIP-seq and TSS) performed in different prokaryotic organisms (bacteria, viruses...) or different experimental conditions (mutant versus wild type strains or different growth states…) facilitating studies.
Features
- RNA-Seq strand coverage visualization : Black (strand +), Purple (strand -)
- ncRNA feature analysis
- X and Y Zooms are supported
- Security enhanced: HTTPS as default
Project Samples
![COV2HTML visualization.php web page. We divided the webpage into color boxes to separate each part. [Grey box] Analysis title and strand. [Orange box] information of Gene or IGR: gene ID or IGR ID; position; strand; type; product; coverage for each replicates; the mean value per condition; the ratio of conditions A/B. [Purple box] Navigation tools within genome. Current gene or IGR surround with link to the previous and next one. A Y-axis button to change coverage scale from 1-250 to 1-2500. [Blue box] Genetic elements in genomic view. Gene in blue, rRNA and tRNA are in red. [Yellow box] Sample’s coverage: analysis condition and replicate genomic coverage views. One graphical bar (one pixel) represents a genomic base coverage. [Green box] Gene or IGR filters to analyse coverage data. At the top others tools : search for a position or a gene ID; activate help boxes; export all or filtered results in a comma-separated value file (Excel compatible).](http://a.fsdn.com/con/app/proj/cov2html/screenshots/04bis_Visualization%20Interface%20%28visualization.png/max/max/1)
