Dear developers,
Thank you for a nice tool to work specifically with codons. Although we have used satisfactorilly your program, we have around 1000 cases where the program fails at the end of execution with this message:
. Checking for NNIs, optimizing five branches...
. [ 66] v1=77 v2=75 v3=68 v4=19 . tree->c_lnL = -8915.701222 lk_init = -8915.696691
. Err in file alrt.c at line 895
. Type enter to exit.
Our command line is this one: codonphyml -i Phy0051DDI_PHALP.alg.clean.cds -d codon -b -2 -m GY -fmodel F3X4 -t e -f e -w DGAMMA -wclasses 3 -o tlr --run_id codon
And I'd like to send you an alignment to allow you to reproduce the error but I don't know how to do it.
You can contact with me for further details at scapella _at _crg_dot_es
All the best,
S
Anonymous
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Hi Salvador, I think we addressed this issue already. Let me know if there are any other issues. Best Marcelo
Dear developers,
Thank you for a nice tool to work specifically with codons.
Although we have used satisfactorilly your program, we have around 1000 cases where the program fails at the end of execution with this message:
. Checking for NNIs, optimizing five branches...
. [ 66] v1=77 v2=75 v3=68 v4=19
. tree->c_lnL = -8915.701222 lk_init = -8915.696691
. Err in file alrt.c at line 895
. Type enter to exit.
Our command line is this one:
codonphyml -i Phy0051DDI_PHALP.alg.clean.cds -d codon -b -2 -m GY -fmodel F3X4 -t e -f e -w DGAMMA -wclasses 3 -o tlr --run_id codon
And I'd like to send you an alignment to allow you to reproduce the error but I don't know how to do it.
You can contact with me for further details at scapella _at _crg_dot_es
All the best,
S
Hi Salvador,
I think we addressed this issue already. Let me know if there are any other issues.
Best
Marcelo