CodaChrome is a tool for visually exploring how the proteome of a bacterium of interest relates to every other finished bacterial genome in GenBank.

Features

  • Gene/Species "Select" Tool - real time substring searches
  • "Sort" rows by a single protein, segment of adjacent proteins or whole proteome
  • "Normalized Sort" allows you to sort by whole proteome identity normalized by replicon length
  • "Save View" - Saves current view to an image file
  • "Blast Online" searches blast alignments on NCBI's website
  • Zoom in/out, view selection, zoom all out
  • Ctrl/Command click on gene arrow and drag to select large segments
  • Gene and Species arrows can can be click dragged or moved with arrow keys

Project Samples

Salmonella 14028S Pathogenicity Island

Project Activity

See All Activity >

Follow CodaChrome

CodaChrome Web Site

Other Useful Business Software
Gen AI apps are built with MongoDB Atlas Icon
Gen AI apps are built with MongoDB Atlas

Build gen AI apps with an all-in-one modern database: MongoDB Atlas

MongoDB Atlas provides built-in vector search and a flexible document model so developers can build, scale, and run gen AI apps without stitching together multiple databases. From LLM integration to semantic search, Atlas simplifies your AI architecture—and it’s free to get started.
Start Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of CodaChrome!

Additional Project Details

Registered

2012-12-06
Report inappropriate content