cnvkit.sh

cnvkit.sh is a shell script to run CNVkit for exome-seq. The shell uses the files produced by exome_test.sh. It allows for recentering the baseline by the average log2ratio of a certain chromosome.
***Update***
The seg can be annotated by cytoband with multithreading.
Individual chromosomal scattergrams are plotted.

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2018-07-24

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