From: Joerg K. W. <we...@in...> - 2004-02-25 08:48:05
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Hi, /cygdrive/d/workingAt/jmol/Jmol> java -Dcdk.debugging=true -jar jmol.jar org.openscience.cdk.tools.AtomTypeFactory INFO: Reading config file from jmol_atomtypes.txt org.openscience.cdk.tools.AtomTypeFactory DEBUG: configFile must be a stream org.openscience.cdk.tools.AtomTypeFactory ERROR: There was a problem getting a stream for jmol_atomtypes.txt org.openscience.cdk.tools.AtomTypeFactory DEBUG: Returning list of size: 224 using Simple Model Adapter Jmol Version 10pre5 Java Sun Microsystems Inc. 1.4.2_03 Windows 2000 org.openscience.cdk.applications.plugin.CDKPluginManager INFO: User dict dir: .jmol\plugins org.openscience.cdk.applications.plugin.CDKPluginManager DEBUG: exists: false org.openscience.cdk.applications.plugin.CDKPluginManager DEBUG: isDirectory: false org.openscience.cdk.applications.plugin.CDKPluginManager DEBUG: Setting prop dir in plugin... org.openscience.cdkplugin.dirbrowser.DirBrowserPlugin DEBUG: User plugin dir: .\jmol\dirbrowser.props org.openscience.cdkplugin.dirbrowser.DirBrowserPlugin DEBUG: exists: false Regards, Joerg > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > On Wednesday 25 February 2004 08:07, Joerg K. Wegner wrote: > >>Hi Egon, >> >> >>>No, that is not necessary if one puts the jar in $HOME/.jmol/plugins >> >>I've copied: >>cdk-apps.jar >>cdk-core.jar >>cdk-extra.jar >>cdk-io.jar >>cdk-libio.jar >>cdk-render.jar >>cdk-standard.jar >>joelib.jar >>joelib4cdk.jar >>log4j.jar >>to >>C:\Dokumente und Einstellungen\wegnerj\.jmol\plugins >> >>and renamed the class to: >>GetNativeDescriptorPlugin > > > Can you run it like: > > java -Dcdk.debugging=true -jar jmol.jar > > And send me the cdk.log that is then created? > > >>then i start: >>sh jmol.sh >> >>Nothing happened: Please send me your successfull tested parts and >>describe your settings ! > > > I renamed the plugin class, and then the plugin was loaded... it did not show > much in the panel, and not sure what it should show, but that's all... > > Does it read a config file? > > My experience with additional libraries is not that big, but have a look at > the WWMM plugin in CDK cvs too... that one uses other libs too, and check how > they do it... > > >>Question: I assume JChemPaint works with this mechanism also ! Correct ? > > > Yes, but the plugin dir is then $HOME/.jchempaint/plugins > > Egon > > - -- > eg...@sc... > PhD on Molecular Representation in Chemometrics > Nijmegen University > http://www.cac.sci.kun.nl/people/egonw/ > GPG: 1024D/D6336BA6 > > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v1.0.7 (SunOS) > > iD8DBQFAPFtqd9R8I9Yza6YRAqgKAJ9y9BdrkR2jIGejQSTpxtP1rVmOOgCgtxou > 7ovlhlNLvuwP3x9+4CldHM0= > =wXSd > -----END PGP SIGNATURE----- > > > > ------------------------------------------------------- > SF.Net is sponsored by: Speed Start Your Linux Apps Now. > Build and deploy apps & Web services for Linux with > a free DVD software kit from IBM. Click Now! > http://ads.osdn.com/?ad_id56&alloc_id438&op=click > _______________________________________________ > Cdk-devel mailing list > Cdk...@li... > https://lists.sourceforge.net/lists/listinfo/cdk-devel > -- Dipl. Chem. Joerg K. Wegner Center of Bioinformatics Tuebingen (ZBIT) Department of Computer Architecture Univ. Tuebingen, Sand 1, D-72076 Tuebingen, Germany Phone: (+49/0) 7071 29 78970 Fax: (+49/0) 7071 29 5091 E-Mail: mailto:we...@in... WWW: http://www-ra.informatik.uni-tuebingen.de -- Never mistake motion for action. (E. Hemingway) Never mistake action for meaningful action. (Hugo Kubinyi,2004) |