[Cdk-devel] [ cdk-Bugs-644160 ] NPE in SSSRFinder.checkEdges()

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Bugs item #644160, was opened at 2002-11-26 16:42
Message generated for change (Comment added) made by steinbeck
You can respond by visiting: 
https://sourceforge.net/tracker/?func=detail&atid=120024&aid=644160&group_id=20024

Category: org.openscience.cdk.renderer
Group: None
>Status: Closed
>Resolution: Invalid
Priority: 5
Submitted By: Nobody/Anonymous (nobody)
Assigned to: Nobody/Anonymous (nobody)
Summary: NPE in SSSRFinder.checkEdges()

Initial Comment:
The file data/bug642426.mol fails to be rendered with

cdk-view --no3d with this exception:



java.lang.NullPointerException

        at

org.openscience.cdk.ringsearch.SSSRFinder.checkEdges(SSSRFinder.java:424)

        at

org.openscience.cdk.ringsearch.SSSRFinder.findSSSR(SSSRFinder.java:172)

        at

org.openscience.cdk.renderer.Renderer2D.paintMolecule(Renderer2D.java:101)

        at

org.openscience.cdk.renderer.MoleculeViewer2D.paint(MoleculeViewer2D.java:213)

        at

javax.swing.JComponent.paintWithOffscreenBuffer(JComponent.java:4735)

        at

javax.swing.JComponent.paintDoubleBuffered(JComponent.java:4688)

        at

javax.swing.JComponent._paintImmediately(JComponent.java:4632)

        at

javax.swing.JComponent.paintImmediately(JComponent.java:4464)

        at

javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:404)

        at

javax.swing.SystemEventQueueUtilities$ComponentWorkRequest.run(SystemEventQueueUtilities.java:117)

        at

java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:178)

        at

java.awt.EventQueue.dispatchEvent(EventQueue.java:443)

        at

java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:190)

        at

java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:144)

        at

java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)

        at

java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:130)

        at

java.awt.EventDispatchThread.run(EventDispatchThread.java:98)



----------------------------------------------------------------------

>Comment By: Christoph Steinbeck (steinbeck)
Date: 2003-09-03 16:42

Message:
Logged In: YES 
user_id=54358

None of the 2D Structure Editors (ChemOffice, JCP, Marvin

applets) that I used were able to read this file, so I take

it as corrupt which may have caused this bug.

----------------------------------------------------------------------

You can respond by visiting: 
https://sourceforge.net/tracker/?func=detail&atid=120024&aid=644160&group_id=20024