[Cdk-devel] [ cdk-Feature Requests-3530542 ] collapsing of groups

[SourceForge.net <no...@so...>]

Feature Requests item #3530542, was opened at 2012-05-29 07:38
Message generated for change (Comment added) made by egonw
You can respond by visiting: 
https://sourceforge.net/tracker/?func=detail&atid=370024&aid=3530542&group_id=20024

Please note that this message will contain a full copy of the comment thread,
including the initial issue submission, for this request,
not just the latest update.
Category: cdk.render
Group: None
Status: Open
Priority: 5
Private: No
Submitted By: Ralf Stephan (rwst)
Assigned to: Nobody/Anonymous (nobody)
Summary: collapsing of groups

Initial Comment:
This can include:
1. similar to the end-methyl mode, collapsing of alkyl-, phenyl-, and more well known groups to e.g. C2H5-, C6H5- or other well known sum formulae
2. replacement with well-known textual abbreviations like Boc (all protective groups for example)
3. of course, a mode for abbrev. amino acids


----------------------------------------------------------------------

>Comment By: Egon Willighagen (egonw)
Date: 2012-06-02 01:09

Message:
Relevant code in the CDK is the FragmentAtom.java.

----------------------------------------------------------------------

Comment By: Ralf Stephan (rwst)
Date: 2012-06-02 00:37

Message:
add to point 1: -NO2, -CO-, -COH, -COOH

----------------------------------------------------------------------

You can respond by visiting: 
https://sourceforge.net/tracker/?func=detail&atid=370024&aid=3530542&group_id=20024