From: <eg...@us...> - 2010-03-10 19:53:15
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Revision: 15469 http://cdk.svn.sourceforge.net/cdk/?rev=15469&view=rev Author: egonw Date: 2010-03-10 19:53:01 +0000 (Wed, 10 Mar 2010) Log Message: ----------- Three more typo's fixed Modified Paths: -------------- cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex Modified: cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex =================================================================== --- cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex 2010-03-10 19:45:16 UTC (rev 15468) +++ cdk-taverna-paper/trunk/cdk-taverna/bmc_article.tex 2010-03-10 19:53:01 UTC (rev 15469) @@ -283,7 +283,7 @@ the first completely free~\cite{free-software-foundation} workflow solution for cheminformatics, which we present here. It makes additional use of other open source components such as Bioclipse~\cite{Spjuth2007} for visualization of -workflow results, and Pgchem::tigress~\cite{PGChemWeb} as interface to the +workflow results, and Pgchem::tigress~\cite{PGChemWeb} as an interface to the database back-end for storage of large data sets. %%%%%%%%%%%%%%%%%%%%%%%%%%%% @@ -292,15 +292,15 @@ \section*{Results} The CDK-Taverna plug-in currently provides 164 different cheminformatics -workers. The fields of application of these workers are described in the -Table~\ref{tab:cheminfoWorkers}. This includes workers for input and output +workers. The fields of application of these workers are described in +Table~\ref{tab:cheminfoWorkers}. These include workers for input and output (I/O) of various chemical files and line notations formats, databases, and descriptors for atoms, bonds and molecules. The miscellaneous workers are e.g. a substructure filter, an aromaticity detector, an atom typer or a reaction enumerator. Some of the workers are outlined as part of example workflows described below (for a complete list see~\cite{KuhnDissertation} or \url{http://cdk.sourceforge.net/cdk-taverna/workers.html}). In the -following, we outline the application of CDK-Taverna in a six selected workflow +following, we outline the application of CDK-Taverna in with selected workflow scenarios. A larger list of workflows is available from MyExperiment.org~\cite{MyExperimentOrg}. This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |