Re: [Cdk-devel] Feature request/ Problem with the isomorphism tester

[Andreas T. <atr...@gm...>]

Hi Gilleain,
> Sounds like an interesting visualisation, that could be done once we
> have support for snake-like lines a bit like in this image:
>
>   http://wwmm.ch.cam.ac.uk/inchifaq/images/suu.gif
>
> except that it would be at right angles to a bond, not along the line
> of the bond, correct?
Correct. The snake line should be right angled to the bond axis.
> As for 'rest labels' of PseudoAtoms, I am not sure what these are.
> Could you link to a revision that paints these, and say which lines
> they are. The new rendering architecture does not currently handle
> pseudo atoms very well, and it is essential that useful features are
> not lost in new versions.
In CDK version 1.0.4 the 2D renderer could draw the PseudoAtom labels. 
In the version 1.2.0 the code is commented out for drawing the labels.
The class is Java2DRenderer in the method paintAtom() on line number 202.
> Finally, with regard to git and submitting; most of us are learning
> how to use it too! There are plenty of git tutorials on the web, but
> there is also this wiki page:
>
>   http://apps.sourceforge.net/mediawiki/cdk/index.php?title=Development_with_Git
>
> which gives some pointers. Also, do try coming onto the irc channel
> #cdk, to ask people directly.
I have downloaded a branch with git. Afterwards I created a project 
within eclipse. But there are problems which I want to discuss in the 
IRC chat...

Regards,
Andreas