[Cdk-commits] SF.net SVN: cdk: [8746] branches/cdk-1.0.x/src/org/openscience/cdk/test/io/ Mol2ReaderTest.java

[<eg...@us...>]

Revision: 8746
          http://cdk.svn.sourceforge.net/cdk/?rev=8746&view=rev
Author:   egonw
Date:     2007-08-28 07:05:48 -0700 (Tue, 28 Aug 2007)

Log Message:
-----------
Removed a test which requires J5

Modified Paths:
--------------
    branches/cdk-1.0.x/src/org/openscience/cdk/test/io/Mol2ReaderTest.java

Modified: branches/cdk-1.0.x/src/org/openscience/cdk/test/io/Mol2ReaderTest.java
===================================================================
--- branches/cdk-1.0.x/src/org/openscience/cdk/test/io/Mol2ReaderTest.java	2007-08-28 14:05:30 UTC (rev 8745)
+++ branches/cdk-1.0.x/src/org/openscience/cdk/test/io/Mol2ReaderTest.java	2007-08-28 14:05:48 UTC (rev 8746)
@@ -112,33 +112,7 @@
         assertEquals("H", m.getAtom(6).getSymbol());
     }
 
-    
-    /**
-     * Tests the Mol2Reader with about 30% of the NCI molecules.
-     * 
-     * @throws IOException if an I/O error occurs
-     * @throws CDKException if an CDK error occurs
-     */
-    public void testNCIfeb03_2D() throws Exception {
-    	if (!runSlowTests()) fail("Not running time consuming test");
-    	
-        String filename = "data/mol2/NCI_feb03_2D.mol2.gz";
-        InputStream in = new GZIPInputStream(Mol2ReaderTest.class.getClassLoader().getResourceAsStream(filename));
-        BufferedReader br = new BufferedReader(new InputStreamReader(in));
-        StringBuilder buf = new StringBuilder();
-        String line;
-        while ((line = br.readLine()) != null) {
-            if (line.startsWith("@<TRIPOS>MOLECULE") && (buf.length() > 0)) {
-                checkMol(buf);
-                buf.delete(0, buf.length() - 1);
-            }
-            buf.append(line).append('\n');
-        }
-        if (buf.length() > 0) {
-            checkMol(buf);
-        }
-    }
-    
+
     public void testBug1714794() throws Exception {
         String problematicMol2 = "@<TRIPOS>MOLECULE\n"
             + "mol_197219.smi\n"
@@ -430,15 +404,4 @@
         	assertNotNull(atom.getAtomTypeName());
         }
     }
-    
-    
-    private void checkMol(StringBuilder buf) throws CDKException {
-        StringReader sr = new StringReader(buf.toString());
-        Mol2Reader reader = new Mol2Reader(sr);
-        IChemFile mol = (IChemFile)reader.read(NoNotificationChemObjectBuilder.getInstance().newChemFile());
-        assertTrue(mol.getChemSequenceCount() > 0);
-        assertTrue(mol.getChemSequence(0).getChemModelCount() > 0);
-        assertTrue(mol.getChemSequence(0).getChemModel(0).getMoleculeSet().getAtomContainerCount() > 0);
-        assertTrue(mol.getChemSequence(0).getChemModel(0).getMoleculeSet().getAtomContainer(0).getAtomCount() > 0);        
-    }
 }


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.