[Cdk-commits] CVS: cdk/src/org/openscience/cdk/geometry/surface NumericalSurface.java,1.1,1.2

[Rajarshi G. <raj...@us...>]

Update of /cvsroot/cdk/cdk/src/org/openscience/cdk/geometry/surface
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv5677/src/org/openscience/cdk/geometry/surface

Modified Files:
	NumericalSurface.java 
Log Message:
Added a comment to make the code a little clearer

Index: NumericalSurface.java
===================================================================
RCS file: /cvsroot/cdk/cdk/src/org/openscience/cdk/geometry/surface/NumericalSurface.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- NumericalSurface.java	9 May 2005 23:42:35 -0000	1.1
+++ NumericalSurface.java	16 May 2005 20:16:06 -0000	1.2
@@ -222,6 +222,7 @@
 
     private void translatePoints(int atmIdx, Point3d[][] points, int point_density, Atom atom, Point3d cp) {
         double total_radius = atom.getVanderwaalsRadius() + solvent_radius;
+
         double area = 4 * Math.PI * (total_radius*total_radius) * points.length / point_density;
 
         double sumx = 0.0;
@@ -294,6 +295,10 @@
                 points.add( tmp );
             }
         }
+
+        // the first column contains the transformed points
+        // and the second column contains the points from the
+        // original unit tesselation
         Point3d[][] ret = new Point3d[ points.size() ][2];
         for (int i = 0; i < points.size(); i++) {
             Point3d[] tmp = (Point3d[])points.get(i);