[Cdk-commits] CVS: cdk/src/org/openscience/cdk/io Gaussian98Reader.java,1.18,1.19 MACiEReader.java,1.31,1.32 MDLReader.java,1.61,1.62 PDBWriter.java,1.9,1.10 PMPReader.java,1.18,1.19

[Egon W. <eg...@us...>]

Update of /cvsroot/cdk/cdk/src/org/openscience/cdk/io
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv4547/src/org/openscience/cdk/io

Modified Files:
	Gaussian98Reader.java MACiEReader.java MDLReader.java 
	PDBWriter.java PMPReader.java 
Log Message:
Moved *Manipulator from cdk.tools into cdk.tools.manipulator

Index: Gaussian98Reader.java
===================================================================
RCS file: /cvsroot/cdk/cdk/src/org/openscience/cdk/io/Gaussian98Reader.java,v
retrieving revision 1.18
retrieving revision 1.19
diff -u -r1.18 -r1.19
--- Gaussian98Reader.java	12 Mar 2004 14:59:04 -0000	1.18
+++ Gaussian98Reader.java	28 Mar 2004 10:04:48 -0000	1.19
@@ -45,7 +45,7 @@
 import org.openscience.cdk.io.setting.IOSetting;
 import org.openscience.cdk.tools.IsotopeFactory;
 import org.openscience.cdk.tools.LoggingTool;
-import org.openscience.cdk.tools.ChemModelManipulator;
+import org.openscience.cdk.tools.manipulator.ChemModelManipulator;
 import org.openscience.cdk.AtomContainer;
 import org.openscience.cdk.CDKConstants;
 

Index: MACiEReader.java
===================================================================
RCS file: /cvsroot/cdk/cdk/src/org/openscience/cdk/io/MACiEReader.java,v
retrieving revision 1.31
retrieving revision 1.32
diff -u -r1.31 -r1.32
--- MACiEReader.java	28 Mar 2004 09:17:01 -0000	1.31
+++ MACiEReader.java	28 Mar 2004 10:04:49 -0000	1.32
@@ -54,8 +54,8 @@
 import org.openscience.cdk.io.setting.IOSetting;
 import org.openscience.cdk.io.setting.IntegerIOSetting;
 import org.openscience.cdk.io.setting.StringIOSetting;
-import org.openscience.cdk.tools.AtomContainerManipulator;
-import org.openscience.cdk.tools.ReactionManipulator;
+import org.openscience.cdk.tools.manipulator.AtomContainerManipulator;
+import org.openscience.cdk.tools.manipulator.ReactionManipulator;
 
 /**
  * Reads an export from the MACiE enzyme reaction database.

Index: MDLReader.java
===================================================================
RCS file: /cvsroot/cdk/cdk/src/org/openscience/cdk/io/MDLReader.java,v
retrieving revision 1.61
retrieving revision 1.62
diff -u -r1.61 -r1.62
--- MDLReader.java	29 Feb 2004 14:11:09 -0000	1.61
+++ MDLReader.java	28 Mar 2004 10:04:49 -0000	1.62
@@ -53,7 +53,7 @@
 import org.openscience.cdk.exception.CDKException;
 import org.openscience.cdk.io.setting.BooleanIOSetting;
 import org.openscience.cdk.io.setting.IOSetting;
-import org.openscience.cdk.tools.AtomContainerManipulator;
+import org.openscience.cdk.tools.manipulator.AtomContainerManipulator;
 import org.openscience.cdk.tools.IsotopeFactory;
 
 /**

Index: PDBWriter.java
===================================================================
RCS file: /cvsroot/cdk/cdk/src/org/openscience/cdk/io/PDBWriter.java,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- PDBWriter.java	12 Feb 2004 10:11:14 -0000	1.9
+++ PDBWriter.java	28 Mar 2004 10:04:49 -0000	1.10
@@ -28,7 +28,7 @@
 import org.openscience.cdk.*;
 import org.openscience.cdk.exception.CDKException;
 import org.openscience.cdk.geometry.CrystalGeometryTools;
-import org.openscience.cdk.tools.ChemModelManipulator;
+import org.openscience.cdk.tools.manipulator.ChemModelManipulator;
 import freeware.PrintfFormat;
 import javax.vecmath.Point3d;
 import java.io.BufferedWriter;

Index: PMPReader.java
===================================================================
RCS file: /cvsroot/cdk/cdk/src/org/openscience/cdk/io/PMPReader.java,v
retrieving revision 1.18
retrieving revision 1.19
diff -u -r1.18 -r1.19
--- PMPReader.java	16 Feb 2004 13:39:03 -0000	1.18
+++ PMPReader.java	28 Mar 2004 10:04:49 -0000	1.19
@@ -48,7 +48,7 @@
 import org.openscience.cdk.Molecule;
 import org.openscience.cdk.SetOfMolecules;
 import org.openscience.cdk.exception.CDKException;
-import org.openscience.cdk.tools.ChemModelManipulator;
+import org.openscience.cdk.tools.manipulator.ChemModelManipulator;
 
 /**
  * Reads an frames from a PMP formated input.