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[Cdk-commits] CVS: cdk/src jmol-applet-b6.javafiles,NONE,1.1 jmol-applet.javafiles,1.4,1.5
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From: Egon W. <eg...@us...> - 2004-02-28 15:01:49
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Update of /cvsroot/cdk/cdk/src In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv19444/src Modified Files: jmol-applet.javafiles Added Files: jmol-applet-b6.javafiles Log Message: Defined CDK classes for Jmol HEAD applet --- NEW FILE: jmol-applet-b6.javafiles --- org/openscience/cdk/Atom.java org/openscience/cdk/AtomContainer.java org/openscience/cdk/AtomType.java org/openscience/cdk/Bond.java org/openscience/cdk/ChemFile.java org/openscience/cdk/ChemObject.java org/openscience/cdk/ChemObjectListener.java org/openscience/cdk/ChemSequence.java org/openscience/cdk/ElectronContainer.java org/openscience/cdk/Element.java org/openscience/cdk/Isotope.java org/openscience/cdk/Molecule.java org/openscience/cdk/SetOfMolecules.java org/openscience/cdk/geometry/GeometryTools.java org/openscience/cdk/geometry/BondTools.java org/openscience/cdk/io/CIFReader.java org/openscience/cdk/io/CMLReader.java org/openscience/cdk/io/CMLWriter.java org/openscience/cdk/io/ChemObjectReader.java org/openscience/cdk/io/DefaultChemObjectReader.java org/openscience/cdk/io/HINReader.java org/openscience/cdk/io/ReaderFactory.java org/openscience/cdk/io/ShelXReader.java org/openscience/cdk/io/cml/CMLErrorHandler.java org/openscience/cdk/io/cml/CMLHandler.java org/openscience/cdk/io/cml/CMLResolver.java org/openscience/cdk/io/cml/Convention.java org/openscience/cdk/io/cml/ConventionInterface.java org/openscience/cdk/io/cml/JMOLANIMATIONConvention.java org/openscience/cdk/io/cml/MDLMolConvention.java org/openscience/cdk/io/cml/PDBConvention.java org/openscience/cdk/io/cml/PMPConvention.java org/openscience/cdk/io/cml/XMLHandler.java org/openscience/cdk/io/cml/cdopi/ANIMATIONCDO.java org/openscience/cdk/io/cml/cdopi/CDOAcceptedObjects.java org/openscience/cdk/io/cml/cdopi/CDOInterface.java org/openscience/cdk/io/cml/cdopi/CMLCDO.java org/openscience/cdk/io/cml/cdopi/NMRCDO.java org/openscience/cdk/math/FortranFormat.java org/openscience/cdk/renderer/color/AtomColorer.java org/openscience/cdk/renderer/color/PartialAtomicChargeColors.java org/openscience/cdk/tools/AtomTypeFactory.java org/openscience/cdk/tools/ChemModelManipulator.java org/openscience/cdk/tools/SetOfMoleculesManipulator.java org/openscience/cdk/tools/IsotopeFactory.java org/openscience/cdk/tools/LoggingTool.java org/openscience/cdk/tools/TXTBasedAtomTypeConfigurator.java org/openscience/cdk/tools/ChemFileManipulator.java org/openscience/cdk/applications/plugin/CDKEditBus.java Index: jmol-applet.javafiles =================================================================== RCS file: /cvsroot/cdk/cdk/src/jmol-applet.javafiles,v retrieving revision 1.4 retrieving revision 1.5 diff -u -r1.4 -r1.5 --- jmol-applet.javafiles 23 Feb 2004 11:20:59 -0000 1.4 +++ jmol-applet.javafiles 28 Feb 2004 14:44:27 -0000 1.5 @@ -2,32 +2,57 @@ org/openscience/cdk/AtomContainer.java org/openscience/cdk/AtomType.java org/openscience/cdk/Bond.java +org/openscience/cdk/CDKConstants.java org/openscience/cdk/ChemFile.java +org/openscience/cdk/ChemModel.java org/openscience/cdk/ChemObject.java org/openscience/cdk/ChemObjectListener.java org/openscience/cdk/ChemSequence.java +org/openscience/cdk/Crystal.java org/openscience/cdk/ElectronContainer.java org/openscience/cdk/Element.java org/openscience/cdk/Isotope.java +org/openscience/cdk/LonePair.java org/openscience/cdk/Molecule.java +org/openscience/cdk/Monomer.java +org/openscience/cdk/BioPolymer.java +org/openscience/cdk/Polymer.java +org/openscience/cdk/PseudoAtom.java +org/openscience/cdk/Ring.java +org/openscience/cdk/RingSet.java +org/openscience/cdk/SetOfAtomContainers.java org/openscience/cdk/SetOfMolecules.java -org/openscience/cdk/geometry/GeometryTools.java +org/openscience/cdk/Vibration.java +org/openscience/cdk/applications/plugin/CDKEditBus.java +org/openscience/cdk/exception/CDKException.java +org/openscience/cdk/exception/NoSuchAtomTypeException.java org/openscience/cdk/geometry/BondTools.java +org/openscience/cdk/geometry/CrystalGeometryTools.java +org/openscience/cdk/geometry/GeometryTools.java org/openscience/cdk/io/CIFReader.java org/openscience/cdk/io/CMLReader.java -org/openscience/cdk/io/CMLWriter.java +org/openscience/cdk/io/DummyReader.java +org/openscience/cdk/io/PDBReader.java +org/openscience/cdk/io/Mol2Reader.java +org/openscience/cdk/io/MDLReader.java +org/openscience/cdk/io/XYZReader.java +org/openscience/cdk/io/ShelXReader.java +org/openscience/cdk/io/ChemObjectIO.java org/openscience/cdk/io/ChemObjectReader.java org/openscience/cdk/io/DefaultChemObjectReader.java org/openscience/cdk/io/HINReader.java org/openscience/cdk/io/ReaderFactory.java -org/openscience/cdk/io/ShelXReader.java +org/openscience/cdk/io/cml/CMLCoreModule.java org/openscience/cdk/io/cml/CMLErrorHandler.java org/openscience/cdk/io/cml/CMLHandler.java org/openscience/cdk/io/cml/CMLResolver.java +org/openscience/cdk/io/cml/CMLReactionModule.java +org/openscience/cdk/io/cml/ChemFileCDO.java org/openscience/cdk/io/cml/Convention.java org/openscience/cdk/io/cml/ConventionInterface.java org/openscience/cdk/io/cml/JMOLANIMATIONConvention.java org/openscience/cdk/io/cml/MDLMolConvention.java +org/openscience/cdk/io/cml/ModuleInterface.java org/openscience/cdk/io/cml/PDBConvention.java org/openscience/cdk/io/cml/PMPConvention.java org/openscience/cdk/io/cml/XMLHandler.java @@ -36,14 +61,26 @@ org/openscience/cdk/io/cml/cdopi/CDOInterface.java org/openscience/cdk/io/cml/cdopi/CMLCDO.java org/openscience/cdk/io/cml/cdopi/NMRCDO.java +org/openscience/cdk/io/setting/BooleanIOSetting.java +org/openscience/cdk/io/setting/IOSetting.java +org/openscience/cdk/io/setting/IntegerIOSetting.java +org/openscience/cdk/io/setting/OptionIOSetting.java +org/openscience/cdk/io/setting/StringIOSetting.java org/openscience/cdk/math/FortranFormat.java org/openscience/cdk/renderer/color/AtomColorer.java org/openscience/cdk/renderer/color/PartialAtomicChargeColors.java +org/openscience/cdk/tools/AtomContainerManipulator.java +org/openscience/cdk/tools/AtomTypeConfigurator.java org/openscience/cdk/tools/AtomTypeFactory.java +org/openscience/cdk/tools/ChemFileManipulator.java org/openscience/cdk/tools/ChemModelManipulator.java +org/openscience/cdk/tools/ChemSequenceManipulator.java +org/openscience/cdk/tools/SetOfAtomContainersManipulator.java org/openscience/cdk/tools/SetOfMoleculesManipulator.java org/openscience/cdk/tools/IsotopeFactory.java org/openscience/cdk/tools/LoggingTool.java org/openscience/cdk/tools/TXTBasedAtomTypeConfigurator.java org/openscience/cdk/tools/ChemFileManipulator.java -org/openscience/cdk/applications/plugin/CDKEditBus.java +org/openscience/cdk/tools/isotopes/IsotopeHandler.java +org/openscience/cdk/tools/isotopes/IsotopeReader.java + |