There is a known problem in Apples JDK with parsing XML using javax, meaning for example that SDFile parsing fails on Mac OS X.
The proposed workaround is to include xercesImpl.jar in cdk/jars.
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Added Xerces 2.9.0 to CDK SVN. SD files are actually not in XML format, but the isotope list is, which is needed for reading SD files with "M ISO" fields.
IMPORTANT: Xerces is not build dependency for the CDK, and just added to make the life easier for OS/X users.
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