#1369 Null bond in the Atomcontainer

[Oleg Dolomanov]

Hi,
I am getting a null bond in the bond list when reading in the attached MOL file. I thought an easy way would be go through the list and remove the null bonds, but the AtomContainer's removeBond method has the following lines:

    IBond bond = bonds[position];
    bond.removeListener(this);

that also cause null pointer exception...

Cheers,
o.

[John May]

Notes:

• Molfile is invalid (bond lines) but should be parsable.
• There should also be a null check in the AtomContainer.

[John May]

Notes 2: very bad molfile, possible formating from HTML problem.

58 551 0 0 0

[John May]

Hmm.. solution here would be load as silent for clean up (listener would not be present). Marking for closure.

[Egon Willighagen]

Oleg, do you have a better MDL molfile, or shall we close this bug?