To have a dock icon and menu bar icon at the same time is not really supported, but a not too complicated solution can be found here:
http://stackoverflow.com/questions/12948539/cocoa-go-to-foreground-background-programmatically/12981068#12981068
If you will find it a low priority task I could implement it for CC menu in the not far future.
Moved to: https://github.com/erikdoe/ccmenu/issues/2
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Moved to: https://github.com/erikdoe/ccmenu/issues/2