Alexander Pertovich Rezvykh - 2018-09-21

Hello! I've tried CASH for detecting and categorizing alternative splicing events in mice. But, output table contains gene names (such as Ndrg3, Nrcam and others), but there are no names of spliced transcripts.
Is there a way to count splice events not for genes, but for each transcript (in Ensembl annotation GTF they are named as ENSMUST00000161639, ENSMUST00000074846)?
Thanks !