cash-program

Comprehensive alternative splicing hunting

Brought to you by: zong0jie

Downloads: 0 This Week

Last Update: 2018-04-03

Get an email when there's a new version of cash-program

CASH (Comprehensive alternative splicing hunting) is visualized and user-friendly software that aims to self-construct AS (alternative splicing) sites and detect differential AS events between samples of RNA-Seq data. CASH consists of two major stages: SpliceCons (Splice site Construction) and SpliceDiff (differential AS detection). By comprehensively reconstructing AS sites from RNA-seq data, SpliceCons increases the recognition of AS events considerably and subsequently, SpliceDiff uses two combined statistical methods to improve the detection of differential AS events.
Different from our previous ASD program, we developed a new module named SpliceCons implemented into CASH and also refined the scripts to detect differential AS events. We recommend using CASH, which now replaces the original ASD version.
You can download CASH from sourceforge or from the website below. Manual is also on the website below.

Project Activity

See All Activity >

Follow cash-program

cash-program Web Site

Other Useful Business Software

Go From AI Idea to AI App Fast Icon

Go From AI Idea to AI App Fast

One platform to build, fine-tune, and deploy ML models. No MLOps team required.

Access Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.

Try Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of cash-program!

Additional Project Details

Registered

2017-01-31

Report inappropriate content

Go From AI Idea to AI App Fast

One platform to build, fine-tune, and deploy ML models. No MLOps team required.

Access Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.

Try Free

Recommended Projects

RNASeq-MATS
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. MATS handles replicate RNA-Seq data from both paired and unpaired study design. More information can be found at http://rnaseq-mats.sourceforge.net.
Cash voucher
A small application for printing the receipts and expenditure cash documents.
GENE-counter
GENE-counter is a computational pipeline for analyzing RNA-Sequencing (RNA-Seq) data for differential gene expression of eukaryotes, prokaryotes, as well as organisms with no available genome reference sequence.
Cash Flow
Personal finance app to keep track of cash, income, expense and budget
EDDA
Experiment Design for Differential Abundance Analysis