Cake Somatic

Cake Wiki Page
Welcome to Cake wiki page. Here we will try to give you a brief description of Cake, our motivation behind developing Cake, various Cake related resources and help.



Abstract
We have developed Cake, a bioinformatics software pipeline that integrates four publicly available somatic variant-calling algorithms to identify single nucleotide variants with higher sensitivity and accuracy than any one algorithm alone. Cake can be run on a high-performance computer cluster or used as a stand-alone application.



Published : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3740632/



Cake Website : http://cakesomatic.sourceforge.net/



How to obtain Cake
Download : http://sourceforge.net/projects/cakesomatic/files/Cake_1.0.tar.gz



Cake User Manual
User Manual : http://sourceforge.net/projects/cakesomatic/files/Cake_User_Manual.pdf



Known Issues
https://sourceforge.net/p/cakesomatic/wiki/Known%20Issues/