[Breakdancer-help] perl version BreakDancer error

[Ma, J. <Jing.Ma@STJUDE.ORG>]

Hi Ken,

I'm running perl version of BreakDancer: release-0.0.1r81.  I got the following error message when trying to run BDmax transchromosomal rearrangement analysis:

lseek: Illegal seek
[bam_header_read] read from pipe; skip EOF checking."

The run generated results though and the result of interchrom events seems to be fine.  I didn't get this error when using the default parameters but got it in the current run when setting "-q 10" (the only change made).

Could you please check this out?

Thanks,
Jing
SJCRH



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