I am using bowtie-2 to align super contigs (~1Mb to a reference). I have used versions 2.1.0, 2.2.3, 2.2.4 and am persistently getting the error above. Is there a solution to this problem or would I have to switch to another aligner?
Hi,
I confirm that for such long reads seems like a good idea to use another aligner.
Val
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Hi,
I confirm that for such long reads seems like a good idea to use another aligner.
Val