--reorder does not actually appear to enforce the original order as seen in the fastq file as it is supposed to.
I can't recreate this issue. Could you (a) report the Bowtie 2 version used, and (b) show an example where Bowtie 2 is producing incorrect output?
Best, Ben
Log in to post a comment.
I can't recreate this issue. Could you (a) report the Bowtie 2 version used, and (b) show an example where Bowtie 2 is producing incorrect output?
Best,
Ben