| 40 |
various format support issues |
None |
open |
|
2008-05-28
|
2008-05-28
|
5 |
|
| 39 |
UnalignedBlock does not create a taxa block properly |
None |
open |
|
2008-05-14
|
2008-05-14
|
5 |
|
| 37 |
Many methods return references to original objects |
None |
open |
|
2007-04-19
|
2008-04-21
|
7 |
|
| 36 |
Error when using nextool.pl to exclude a subtree |
None |
open |
|
2007-04-19
|
2007-04-19
|
5 |
|
| 35 |
Node::parse() parses taxa in trees differently than other bl |
None |
open |
|
2007-04-19
|
2008-04-21
|
7 |
|
| 30 |
"interleave" token in CharactersBlock->{Format} not removed |
None |
open |
|
2007-04-19
|
2007-04-19
|
5 |
|
| 29 |
Select and Exclude column functions may corrupt assumptions |
None |
open |
|
2007-04-19
|
2008-04-21
|
7 |
|
| 27 |
Select and Exclude OTU functions do not change all blocks |
None |
open |
|
2007-04-19
|
2008-04-21
|
7 |
|
| 26 |
branch lengths incorrect when otus are removed |
None |
open |
|
2007-04-19
|
2007-04-19
|
5 |
|
| 24 |
rename command in nextool does not affect all blocks |
None |
open |
|
2007-04-19
|
2007-04-19
|
5 |
|
| 23 |
Undocumented rewrite and addtree commands in nextool |
None |
open |
|
2007-04-19
|
2008-04-21
|
3 |
|
| 21 |
nexplot creates bogus trees when two nodes have the same nam |
None |
open |
|
2007-04-19
|
2008-04-21
|
3 |
|
| 17 |
Nexplot plots rootnodes for unrooted trees |
None |
open |
|
2007-04-19
|
2008-04-21
|
3 |
|
| 14 |
loss of first line of alignment in pipeline NEXUS output |
None |
open |
|
2007-04-19
|
2008-04-21
|
1 |
|
| 12 |
trees not rooted in pipeline NEXUS output |
None |
open |
|
2007-04-19
|
2008-04-21
|
1 |
|
| 9 |
pipeline NEXUS output with non-numerics in wtset vector |
None |
open |
|
2007-04-19
|
2008-04-21
|
1 |
|
| 7 |
Bio::NEXUS::CharactersBlock comparison method fails to see c |
None |
open |
|
2007-04-19
|
2007-04-19
|
5 |
|
| 6 |
inconsistent numbering of inodes in SPAN vs. nexplot |
None |
open |
|
2007-04-19
|
2008-04-21
|
3 |
|
| 5 |
psresize fails with nexplot-generated PostScript |
None |
open |
|
2007-04-19
|
2008-04-21
|
1 |
|
| 4 |
Margin loss in PDF conversion of multi-page nexplot-generate |
None |
open |
|
2007-04-19
|
2008-04-21
|
1 |
|
| 3 |
gv doesn't see multi-page format of nexplot-generated PostSc |
None |
open |
|
2007-04-19
|
2008-04-21
|
1 |
|
| 2 |
SPAN DBI connect failure |
None |
open |
|
2007-04-19
|
2008-04-21
|
1 |
|
| 1 |
Node.pm method fails to read distance in scientific notation |
None |
open |
|
2007-04-19
|
2007-04-19
|
5 |
|
